BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27510.1
Length=2330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492043 jgi|Araly1|492043|fgenesh2_kg.7__1476__AT4G27510.1 3426 0.0
> Ahg492043 jgi|Araly1|492043|fgenesh2_kg.7__1476__AT4G27510.1
Length=2319
Score = 3426 bits (1855), Expect = 0.0
Identities = 2175/2327 (93%), Gaps = 31/2327 (1%)
Strand=Plus/Plus
Query 8 AAGCATTTTCTCCTCTTTCCTTACGGCGATGACGGCCAAGCGGAAGAGTAAGAAACGCCC 67
||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 AAGCAGTTTCTCCTCTTTCCTTACGGCGATGACGGCCAAGCGAAACAGTAAGAAACGCCC 60
Query 68 AGCTTCGAAGGTCTCAGATCCCGTCAACTTATTCCGATCCCTTGCTTCAGCAATTACGTC 127
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCTTCGAAGGTCTCAGATTCCGTCAACTTATTCCGATCCCTTGCTTCAGCAATTACGTC 120
Query 128 CTCTCAGGTTTCTCAGAAGCCAATTTTGAAACGTTTATTGTGCCTTCTGGGTCCTTTATC 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCAGGTTTCTCAGAAGCCAATTTTGAAACGTTTATTGTGCCTTCTGGGTCCTTTATC 180
Query 188 ATTAACCCAACCAACAAATTGGGAGAATTGTGACATTGCTTCACATCATTGGAATATCAA 247
|||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 181 ATTAACCCAACCAATAAATTGGGAGAATTGTGACGTCGCTTCACATTATTGGAATATCAA 240
Query 248 GTTCCGTGGAGAGAAAGTGGACTTGATCAATTTCGATGATGTCTGTTTCCTCTCTGATGT 307
|||| |||||||| ||||||| ||||||| |||||| |||||||||| ||||||||||||
Sbjct 241 GTTCAGTGGAGAGCAAGTGGAATTGATCAGTTTCGAGGATGTCTGTTACCTCTCTGATGT 300
Query 308 GTTGTTCACAGAGCTTGATAGGAGTCTCGAAAGCCTGTTCGCTACTTTATTCAAACAAAA 367
||||||||||||||||||| |||| || ||| ||| ||||||||||| |||||||||||
Sbjct 301 TTTGTTCACAGAGCTTGATACGAGTTTCAAAAACCTATTCGCTACTTTGTTCAAACAAAA 360
Query 368 GGCTGAAACTTGTCCTACATTTGAAAGTACAGAAGATAGTATTGAATTAGCTTCGCTGTT 427
||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 361 GGCTGAAGCTTGTCCCACATTTGAAAGCACAGAAGATAGTATTGAATTAGCCACTCTGTT 420
Query 428 CTTAAAATGTTGTATGAAGATCATGTCTTTACTTGTGGCCAAACAAGAGCTTGTTCTGGA 487
|||||| | |||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 421 CTTAAAGTCTTGTATGAAGATCATGAGTTTACTTGTGCCCAAACAAGAGCTGGTTCTGGA 480
Query 488 GAAGGCCAAAACTCTTCTCTCGATCCTCGGTAGATTGATTCGTGCAAGAAATGGAGATTG 547
|||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 481 GAAGGCCAAAACTCTTCTCTCGATCCTCACTAGATTGGTTTGTGCAAGAAATGGAGATTG 540
Query 548 TTCTTTTGTATTCACGCATGACGGTTCTTTAGATCCCCGTCATACGTTTCTTTGTACAGG 607
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 541 TTCTTTTGTATTCACGCATGACGGTTCTTTTGATCCCCGCCATATGTTTCTTTGTACAGG 600
Query 608 GATTGAGGTTTTTATGGATGAGATTTTGGTGAATAAGTCAATCAGCGACCTTCTTTTCGT 667
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 601 GATTGAGGTTTTCATGGATGAGATTTTGGTGAATAAGTCAATCAGGGATCTTCTTTTCGT 660
Query 668 AGTTGATTCTGCATTCTCCTCATGTAGACTGTTTAGTAAGCATGATAGGGCCGGTGTGGT 727
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 AGTTGATTCTGCATTCTCCTCATGTAGACTGTTCAGTAAGCATGATAGGGCCGGTGTGGT 720
Query 728 GCAAATCGTTTCTGCTCATTTTATTATCGCAACTTCTGATGAGAAAACGAATCAAATGTG 787
| |||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 721 GGAAATGGTTTCTGCTCATTTTATCATCTCAACTTCTGATGAGAAAATGAATCAAATGTG 780
Query 788 TGTTGAGAGATTATATTGGAAGAAAGGTAATGCATTTAGAACTCCCCAGATAAGCTTGAG 847
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 781 TGTTGAGAGATTATATTGGAAGCAAGGTAATGCATTTAGAACTCCCCAGATAAGCATGAG 840
Query 848 TGCTGCTGTGTCCTTGCTGCTAAACCCGGTTATGTTCTCTGCACCAAAAATGATCCATGC 907
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TGCTGCTGTGTCCTTGCTGCTAAACCCGGTTATGTTCTCTGCACCAAGAATGATCCATGC 900
Query 908 CTATGTGGTTTTATTGGTGTCTGACGCCATTGGTATTTGTTCACATCCATGTTTTAAGGG 967
||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct 901 CTATGTGGTTTTATTGGTGTCTGACGCCATTGGCATTTTTTCACATCCATGCATTAAGGG 960
Query 968 ATTAGACCTTCAGCTTATTGATCACTATATTGATGCATTTGAAAAGTCTGTTGTTTTGTA 1027
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 ATTAGACCTTCAACTTATTGATCACTATATTGATGCATTTGAAAAGTCTGTTGTGTTGTA 1020
Query 1028 TAAGAGACACATGTCTAAGAGTGAGAATGGC-CTGTCTGGGAAGTTTGGCTTTTTGACGA 1086
||||| ||||||||||||||||| ||| ||| | |||||||||||||| ||||||||||
Sbjct 1021 TAAGATACACATGTCTAAGAGTGCGAAAGGCTCA-TCTGGGAAGTTTGGTTTTTTGACGA 1079
Query 1087 GTAAGTCTCGGGTGGCTTTTGAACATCGTCTTTTGCCCTCAACACTGGCGAAAGTTAATG 1146
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1080 GTAAGTCTCGGGTGGCTTTTGAACATCGTGTTTTGCCCTCAACACTGACGAAAGTTAATG 1139
Query 1147 ATGTTACACAGCAGCTAAAGGATTCATGGGATTCATATCAAAGTGATAATGCGAAGAGAG 1206
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATGTTACACTGAAGCTAAAGGATTCATGGGATTCATATCAAAGTGATAATGCGAAGAGAA 1199
Query 1207 AAAACAATGAGCTGGTAGCGTATTCTGTTGCATACGCAAAGGAAAGCTTATGTGTATTTG 1266
||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1200 AAAACAATGAGCTGGTAGCGTATTCTGTTGCATACGCTAAGGAAAGCTTGTGTATATTTG 1259
Query 1267 ATAGCTCCTGCTCTGAAAGTATGTTGTCTCAGACCTTATCAATTCTTGGTTGCGTGATAC 1326
||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1260 ATAGCTCCTGCTCGGAAAATATGTTGTCTCAGACCTTAACAATTCTTGGTTGCGTGATAC 1319
Query 1327 TTAGAGCTAGTTCTGATGATGTTATGGACTCTGTGTTGGAAAAATACAACACATCTAGTA 1386
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTAGAGCTAGTTCTGATGATGTTGTGGACTCTGTGTTGGAAAAATACAACACATCTAGTA 1379
Query 1387 TGGAAGATCTATATCTGCTTGCATCCACACTTAAGTTCATGACTTGTTCGATGTTGCAAG 1446
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGAAGATCTATATCTACTTGCATCCACACTTAAGTTCATGACTTGTTCGATGTTGCAAG 1439
Query 1447 CCATCCGGGTTCTCAGGAATTGGAACTGGC----AT--GAAGCTGGAGGTGATGTTCGAG 1500
|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1440 CCATCCGGGTTCTCAGGAATTGGAACTGGCTTCGATCTGAAGCTGTAGGTGATGTTCGAG 1499
Query 1501 CTTGCAAGGAATACAAAGCCATGATGGATGTTGTTCAACGTTTTGAACAGTTCAATATTC 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1500 CTTGCAAGGAATACAAAGCCATGATGGATGTTGTTCAACGTTTTGAACAGTTCAGTGTTC 1559
Query 1561 ATATGCCCTGTCAAAGTTTCCTGCGCGATAGAATGGAATCTTACCCTCACAGA--T---- 1614
|| ||||||||||||||||||||||||| ||| |||||||| | ||||||||| |
Sbjct 1560 ATTTGCCCTGTCAAAGTTTCCTGCGCGAGAGACTGGAATCTCATCCTCACAGAAATGTGA 1619
Query 1615 ---CTAAGTGGATGCTTATGCATTTTTCAGGCTTACTGTCTGTAAGCTTTGCACTCAAGC 1671
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1620 AATCTAAGTGGATGCTTATGCACTTTGCAGGCTTACTGTCTGTAAGCTTTGCACTCAAGC 1679
Query 1672 TTGACTTTCTAGTGAAGGACTCCATTTTTGGAATGGTGATATCTATGTATTTATTCATCC 1731
|||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 1680 TTGACTTTCTAGTGAAGGACTCTATTTTTGGAATTGTGATATCTCTGTATTTATTCATCC 1739
Query 1732 TAGAAGGGGGTGACTTGGAAGCACTTGGGGATTCAGTTGGTCACTCAGAAAACACGT-CA 1790
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||
Sbjct 1740 TAGAAGGGGGTGACTTGGAAGCACTTGGGGATTCAGTTGGACACTCAGAAAAT-CTTTCA 1798
Query 1791 TCGTCTATA-CTATCCAGTGGTTCCAAAAACTTGGCTGCTTCTGGTAAAGCTGACAAGAC 1849
||||| ||| | ||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1799 TCGTCCATATC-ATCAAGTGGTTCCAAAAACTTGGCAGCTTCTGGTAAAGCTGACGAGAC 1857
Query 1850 AGCAGTAGATAGGAAACAGAGCGGGGCAGTTGCTTTGAAGTTTCACAAAAACCGAACTTT 1909
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1858 CGCAGTAGATAGGAAACAGAGCGGGGCGGTTGCTTTGAAGTTTCACAAAATCCGAACTTT 1917
Query 1910 GTACT-TGGGGAAGGTGTCTGAAGCTAAAGGTCCAGAGAATGGTTCAGATTCAGGAGTTG 1968
||| | |||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 1918 GTA-TATGGGGAAGGTGTCTGAAGCTAAAGATCCAGAGAATGATCCAGATTCAGGAGTTG 1976
Query 1969 GTGTTGAAGAGGAAACCTGCAATGGGGAGAGATTTCTGTGGTGTATGGCAGGAAAAGGTA 2028
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1977 GTGTTGAAGAGGAAAGCTGCAATGGGGAGAAATTTCTGTGGTGTATGGCTGGAAAAGGTA 2036
Query 2029 ACGTGACAAAAACCGATGTGGACGAGTTGGCAGATTTCATAGCGTGTGATCCCGGTAAGG 2088
|| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2037 ACCTGAGACAAACCGATGTGGACGAGTTGGCAGATTTCATAGCGTGTGAGCCCGGTAAGG 2096
Query 2089 ACTACTCCGACTGGCTAAAAGGGAGAGAACGATTTCGGAACCAACGGTGGAAGTCAGACA 2148
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 2097 ACTACTCCGACTGGCTAAAAGGGAGAGAACGATTTCGGAAGCAGCGGTGGAAGTCGGACA 2156
Query 2149 AGATTGCTAAAGAAAGGTGGAATAAGAAGCAAAAA-GCTTGGAGAGAGAACAGAGGAAGA 2207
|||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 2157 AGATTGCTAACCAAAGGTGGAATAAGAAG-AAAAATGCTTGGAGAGAGAGCAGAGGAAGA 2215
Query 2208 GGGTCTAAAAGCTGAATGTTAATCTTCTGTTGTAAAAGAGTTCATCATGTAGAAATGTCA 2267
| ||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 2216 GTGTCTAAAAGCTGAGTGT-A-TCTTCTGTTGTAAAAGAGTTAATCATGTAGAAATGTCA 2273
Query 2268 CTACTTTAGT--C-TCTGATAATTATGTATAAAATGGTTTCTATTAT 2311
||||||| | | ||||||||||||||| |||||||||||||||||
Sbjct 2274 TTACTTTATTAGCCTCTGATAATTATGTA-AAAATGGTTTCTATTAT 2319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87759924480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5