BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27520.1 Length=1364 Score E Sequences producing significant alignments: (Bits) Value Ahg945300 jgi|Araly1|945300|scaffold_701529.1 1430 0.0 > Ahg945300 jgi|Araly1|945300|scaffold_701529.1 Length=1051 Score = 1430 bits (774), Expect = 0.0 Identities = 995/1094 (91%), Gaps = 46/1094 (4%) Strand=Plus/Plus Query 67 TCTCGCAGCTTTTGAAAAACATGACCTTTCTAAAAATGAAAAGCCTTTCTTTCTTCTTCA 126 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCACAGCTTTTGAAAACCATGACCTTTCTAAAAATGAAAAGCCTTTCTTTCTTCTTCA 60 Query 127 CCATCCTCCTCTCTCTCTCGACCCTCTTCACCATCTCCAACGCACGGAAGTTTAATGTCG 186 |||||||||||||||| || || |||||||||||||| ||||||||||||||||||||| Sbjct 61 CCATCCTCCTCTCTCTTTCTACGTTCTTCACCATCTCCGACGCACGGAAGTTTAATGTCG 120 Query 187 GAGGCAGTGGCGCGTGGGTTACAAACCCACCTGAAAACTACGAATCTTGGTCTGGCAA-A 245 ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| || | Sbjct 121 GAGGCAGCGGCGCGTGGGTTCCAAACCCACCTGAAAATTACGAATCTTGGTCTGG-AAGA 179 Query 246 AACCGTTTCCTTGTTCACGACACTCTCTATTTTAGCTACGCTAAGGGAGCTGACTCGGTG 305 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 180 AACCGTTTCCTTGTTCACGACACACTCTATTTTAGCTACGCTAAGGGAGCTGACTCGGTG 239 Query 306 CTAGAGGTGAACAAGGCTGATTACGACGCTTGTAATACAAAGAATCCGATCAAAAGAGTG 365 ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 240 GTAGAGGTAAACAAGGCTGATTACGACGCTTGTAATTCAAAGAATCCGATCAAAAGAGTG 299 Query 366 GACGATGGAGATTCTGAGATCTCTCTTGATCGTTATGGTCCGTTTTACTTCATCAGTGGC 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GACGATGGAGATTCTGAGATCTCTCTTGATCGTTATGGTCCGTTTTACTTCATCAGTGGC 359 Query 426 AATGAAGATAACTGTAAGAAGGGTCAAAAGCTTAATGTCGTTGTCATATCTGCTAGGATT 485 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| || Sbjct 360 AATGAAGATAACTGTAAGAAGGGTCAAAAGCTTGCTGTTGTTGTCATATCTGCTAGGGTT 419 Query 486 CCATCAACGGCTCAGTCTCCTCACGCCGCTGCACCGGGAAGCTCTACGCCGGGATCAATG 545 ||||||||||||||| |||||||||| |||||||||||||| | | | | | Sbjct 420 CCATCAACGGCTCAGCCTCCTCACGCTGCTGCACCGGGAAG-T-T-C-------T-A--- 465 Query 546 ACTCCGCCGGGAGGAGCCCACTCGCCTAAATCTTCCTCCCCTGTTTCTCCGACGACTTCT 605 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 -C---GCCGGGAGGAGCCCACTCGCCTAAATCTTCCTCCCCTGTTTCTCCGACGACTTCT 521 Query 606 CCTCCGGGATCGACTACTCCGCCTGGAGGAGCTCACTCGCCTAAATCTTCATCAGCTGTC 665 || |||||||| | | || ||| | | || | | | || ||| | || Sbjct 522 CCACCGGGATCAA-TGG-CC-CCTA-A--A--TC-CG-G--T---TCC-CAT--G--GT- 560 Query 666 TCTCCGGCGACTTCTCCTCCAGGATCAATGGCGCCTAAATCCGGCTCC-CCTGTTTCTCC 724 |||||| |||||| || || ||||||||||| |||||||||| | | ||||||||||| Sbjct 561 TCTCCGATGACTTCACCGCCGGGATCAATGGCTCCTAAATCCGA-TACTCCTGTTTCTCC 619 Query 725 GACGACTTCACCACCGGCACCACCTAAATCCACGTCCCCTGTTTCCCCATCCTCTGCTCC 784 | ||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 620 GGCGACTTCTCCCCCGGCTCCACCTAAATCCACTTCCCCTGTTTCCCCATCCTCTGCTCC 679 Query 785 GATGACTTCACCGCCGGCACCAATGGCACCTAAATCATCTTCAACTATTCCTCCGTCTTC 844 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 680 GATGACTTCACCGCCGGCACCAATGGCACCTAAATCATCTTCCACTGTTCCTCCGTCTTC 739 Query 845 TGCTCCGATGACTTCACCACCTGGATCAATGGCACCTAAATCTTCATCCCCTGTTTCAAA 904 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 740 TGCTCCGATGACTTCACCACCTGGACCAATGGCACCTAAATCTTCATCCCCTGTTTCAAA 799 Query 905 CTCACCCACCGTTTCTCCATCGTT-GGCTCCGGGAGGCTCTACTTCTTCTTCACCGTCAG 963 ||||||| ||||||||||||| || |||||||||||||||| |||||||||||||||||| Sbjct 800 CTCACCCGCCGTTTCTCCATC-TTCGGCTCCGGGAGGCTCTGCTTCTTCTTCACCGTCAG 858 Query 964 ATTCTCCGTCAGGCTCGGCGATGGGTCCTTCAGGAGATGGTCCATCAGCCGCTGGTGATA 1023 ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| Sbjct 859 ATTCTCCGTCAGGCTCGGCGATGGGTCCTTCGGGAGATGGTCCATCAGCCTCCGGTGATA 918 Query 1024 TCTCTACGCCGGCTGGAGCTCCAGGGCAGAAAAAATCGTCGGCGAATGGTATGACCGTTA 1083 || |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 919 TCACTACGCCGGCGGGAGCTCCAGGGCAGAAAAAATCGTCGGCGAATGGTATGGCCGTTA 978 Query 1084 TGTCGATTACTACGGTTTTAAGTTTGGTTTTGACCATCTTTCTGTCAGCTTAAGAACACT 1143 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 979 TGTCTATTACTACGGTTTTAAGTTTGGTTTTGACCATCTTTATGTCAGCTTAAGAACACT 1038 Query 1144 TGTGAGACTTGTTT 1157 || ||||||||||| Sbjct 1039 TG-GAGACTTGTTT 1051 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51046585863 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5