BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27560.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492036 jgi|Araly1|492036|fgenesh2_kg.7__1469__AT4G27560.1 2233 0.0
Ahg950022 jgi|Araly1|950022|scaffold_801909.1 540 1e-152
> Ahg492036 jgi|Araly1|492036|fgenesh2_kg.7__1469__AT4G27560.1
Length=1540
Score = 2233 bits (1209), Expect = 0.0
Identities = 1340/1403 (96%), Gaps = 9/1403 (1%)
Strand=Plus/Plus
Query 16 TTTAGTCTCCAAAGCATAATAGAGATACAAAGAAACAAGAAAACGAA-AGGAAAAAATAC 74
|||||| ||||||||| |||||||||||||| ||||||||||| ||| | ||||||||||
Sbjct 1 TTTAGTATCCAAAGCAGAATAGAGATACAAATAAACAAGAAAAAGAAGAAGAAAAAATAC 60
Query 75 AGAAATGGGTGGTTTGAAGTTTCATGTACTTATGTATCCATGGTTCGCAACAGGCCATAT 134
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAATGGGTGGTTTGAGGTTTCATGTACTTATGTATCCATGGTTCGCAACAGGCCATAT 120
Query 135 GACCCCGTTCCTTTTTCTTGCCAACAAATTGGCTGAGAAAGGTCATACGGTCACTTTTTT 194
||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 121 GACTCCGTTCCTTTATCTTGCCAACAAATTGGCTGAGAAAGGTCATATGGTTACTTTCTT 180
Query 195 GATTCCCAAGAAAGCTCTGAAACAGTTGGAAAATCTCAATCTGTTTCCACACAACATTGT 254
| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GCTTCCTAAGAAAGCTCTGAAACAGTTGGAACATCTCAATCTGTTTCCACACAACATTGT 240
Query 255 CTTTCGCTCTGTCACCGTCCCTCATGTGGATGGTCTCCCCGTTGGCACAGAGACAGTCTC 314
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTCGCTCTGTCACCATCCCTCATGTGGATGGTCTCCCCGTTGGCACAGAGACAGTCTC 300
Query 315 TGAGATCCCCGTGACATCAGCTGATCTCTTGATGTCTGCTATGGATCTCACACGTGATCA 374
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TGAGATCCCGGTAACATCAGCTGATCTCTTGATGTCCGCTATGGATCTCACACGTGATCA 360
Query 375 AGTTGAAGGTGTGGTCCGAGCCGTGGAACCGGACCTGATCTTCTTTGACTTCGCTCATTG 434
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 AATTGAAGTTGTGGTCCGAGCCGTGGAACCGGACCTGATCTTCTTTGACTTTGCTCATTG 420
Query 435 GATTCCAGAGGTAGCTAGAGACTTTGGCCTTAAGACTGTAAAGTACGTCGTGGTATCTGC 494
||||||| | |||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 421 GATTCCACAAGTAGCTAGAGACTTGGGCATTAAGACTGTAAAGTACGTCGTGGTGTCTGC 480
Query 495 ATCGACTATAGCTAGTATGCTTGTTCCAGGTGGTGAGTTAGGTGTTCCTCCGCCGGGATA 554
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 ATCGACCATAGCTAGTATGCTTGTCCCAGGTGGTGAGTTAGGTGTTCCTCCGCCGGGATA 540
Query 555 TCCTTCATCGAAGGTGCTGCTTCGTAAACAAGATGCTTACACCATGAAGAATCTGGAGTC 614
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 541 TCCTTCATCGAAGGTGCTGCTTCGTAAACAAGATGCTTACACCATGAAGAACCTGGAG-C 599
Query 615 TACAAATACAATCAATGTCGGACCAAACTTATTGGAAAGAGTCACTACAAGTCTTATGAA 674
| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 600 --C---TACAATCGATGTCGGACCAAACTTGTTGGAACGAGTCACTACAAGTCTTATGAA 654
Query 675 CTCTGATGTCATTGCGATAAGGACAGCCAGAGAAATCGAAGGAAACTTTTGCGACTATAT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTCTGATGTCATTGCGATAAGGACAGCCAGAGAAATCGAAGGAAACTTTTGCGACTATAT 714
Query 735 CGAAAAACATTGCAGGAAAAAGGTTCTCTTGACAGGTCCGGTGTTCCCTGAGCCAGACAA 794
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 715 CGAAAAGCATTGCAGGAAAAAGGTTCTCTTGACAGGTCCGATGTTCCCTGAGCCAGACAA 774
Query 795 GACTAGAGAGCTAGAGGAACGATGGGTTAAGTGGCTAAGTGGGTATGAACCAGACTCAGT 854
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 775 GACTAGAGAGCTAGAGGAACGATGGATTAAGTGGCTAAGTGGGTATGAACCAGACTCAGT 834
Query 855 GGTGTTTTGTGCGTTGGGCTCACAAGTCATTTTAGAGAAAGATCAATTCCAAGAACTCTG 914
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 835 GGTGTTTTGTGCATTGGGCACACAAGTCATTTTAGAGAAAGATCAGTTCCAAGAACTCTG 894
Query 915 CTTAGGAATGGAGCTAACAGGTTCACCGTTTCTTGTAGCGGTTAAGCCACCTAGAGGCTC 974
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CTTAGGGATGTAGCTAACAGGTTCACCGTTTCTTGTAGCGGTTAAGCCACCTAGAGGCTC 954
Query 975 ATCAACGATTCAAGAAGCACTTCCTGAAGGATTCGAGGAGAGGGTTAAAGGAAGAGGAGT 1034
|||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 955 ATCAACGATTGAAGAAGCACTTCCAGAAGGATTCGAGGAGCGGGTTAAAGGAAGAGGAGT 1014
Query 1035 TGTTTGGGGAGAATGGGTTCAACAACCATTGCTATTGTCTCATCCATCAGTCGGGTGCTT 1094
||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1015 TGTTTGGGGAGGATGGGTTCAACAACCATTGATATTGTCTCATCCATCCGTCGGGTGCTT 1074
Query 1095 TGTGAGCCATTGTGGGTTTGGATCAATGTGGGAGTCTTTGCTGAGTGATTGTCAGATAGT 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGTGAGCCATTGTGGGTTTGGATCAATGTGGGAGTCTTTGCTGAGTGATTGTCAGATAGT 1134
Query 1155 CTTGGTACCACAGTTGGGTGATCAGGTCCTCAACACAAGATTGCTGAGTGACGAACTCAA 1214
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1135 CTTGGTGCCACAGTTGGGTGATCAGGTTCTCAACACAAGATTGATGAGTGACGAACTCAA 1194
Query 1215 GGTTTCGGTTGAAGTGGCAAGAGAGGAAACAGGATGGTTCTCGAAAGAGAGCTTGT-TCG 1273
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1195 GGTTTCGGTCGAAGTGGTAAGAGAGGAAACAGGATGGTTCTCGAAAGAGAGCTTGCGT-G 1253
Query 1274 ATGCTATCAATAGTGTGATGAAAAGGGACAGTGAGATCGGGAATCTGGTGAAGAAGAATC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATGCTATCAATAGTGTGATGAAAAGGGACAGTGAGATCGGGAATCTGGTGAAGAAGAATC 1313
Query 1334 ACACCAAGTGGAGGGAGACACTAACTAGTCCTGGACTTGTGACCGGTTATGTCGATAATT 1393
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1314 ACACCAAGTGGAGGGAGACACTAGCTAGTCCTGGACTTTTGACCGGTTATGTCGATAATT 1373
Query 1394 TCATAGAGTCATTGCAGGATCTT 1416
|||||||||||||||||||||||
Sbjct 1374 TCATAGAGTCATTGCAGGATCTT 1396
> Ahg950022 jgi|Araly1|950022|scaffold_801909.1
Length=1384
Score = 540 bits (292), Expect = 1e-152
Identities = 965/1280 (75%), Gaps = 85/1280 (7%)
Strand=Plus/Plus
Query 91 AAGTTTCATG-TACTTATGTAT-CCATGGTTCGCAACA-GGCCATATGACCCCGTTCCTT 147
|||||||| | | |||||| | ||||||||||| | || |||||||| ||| | |||
Sbjct 30 AAGTTTCACGCT-TTTATGT-TCCCATGGTTCGC-TTATGGTCATATGACTCCG-TACTT 85
Query 148 -TTTCTTGCCAACAAATTGGCTGAGAAAGGTCATACGGTCACTTTTTTGATTCCCAAGAA 206
||| |||||||| | |||||||||||||||| ||| ||||| ||| | || |||||
Sbjct 86 GCATCTAGCCAACAAGCTAGCTGAGAAAGGTCATAGGGTTACTTTCTTGCTGCCTAAGAA 145
Query 207 AGCTCTGAAACAGTTGGAAAATCTCAATCTGTTTCCACACAACATTGTC--TT-TCGCTC 263
||||| |||||||||||| ||| ||||||||||||| ||| ||| ||| || || |||
Sbjct 146 AGCTCAAAAACAGTTGGAACATCACAATCTGTTTCCAGACAGCATCGTCTTTTATC-CTC 204
Query 264 TGTCACCGTCCCTCATGTGGATGGTCTCCCCGTTGGCACAGAGACAGTCTCTGAGATCCC 323
| | || | |||||||| ||||||||||| | |||| | ||||| | ||| || |||||
Sbjct 205 T-T-ACTATTCCTCATGTTGATGGTCTCCCTGATGGCGCCGAGACCGCCTCGGATATCCC 262
Query 324 CGTGACATCAGCTG-A-TCTCTTGA-TGTCTGCTATGGATCTCACACGTGATCAAGTTGA 380
| | | | | | | | || ||| | | || |||||||||||||| ||||| || ||
Sbjct 263 CATCTCGT-TGGGGAAGTTTC-TGACCG-CAGCCATGGATCTCACACGCGATCAGGTCGA 319
Query 381 AGGTGTGGTCCGAGCCGTGGAACCGGACCTGATCTTCTTTGACTTCGCTCATTGGATTCC 440
|| | ||| || || | |||| |||||||| || ||||| || ||| ||||| ||||
Sbjct 320 AGCCGCGGTTCGTGCTTTAAAACCAGACCTGATATTTTTTGATTTTGCTTATTGGGTTCC 379
Query 441 AGAGGTAGCTAGAG-ACTTTGGCCTTAAGACTGTAAAGTACGTCGTGGTATCTGCATCGA 499
|| | || |||| || | | | |||| ||| ||| | |||||||| || | |
Sbjct 380 GGAAATGGCGAGAGAAC-ATAACGTCAAGAGTGTGCTCTACTTTGTGGTATCGGC-T-AA 436
Query 500 CT--ATAGCTAGTATG--CTTGTTCCAGGTGGTGAGTTAGGTGTTCCTCCGCCGGGATAT 555
|| |||||| ||| ||||| ||||||||||| ||||| |||||||| || || |||
Sbjct 437 CTCCATAGCT--CATGAACTTGTCCCAGGTGGTGAATTAGGAGTTCCTCCACCTGGTTAT 494
Query 556 CCTTC-ATCGAAGGTGCTGCT-TCGTAAACAAGATGCTTACACCATGAAGAATCTGGAGT 613
||||| | | || ||| || | ||| ||| |||||| || | || | | || |
Sbjct 495 CCTTCGA-CAAAAGTGTTG-TACCGTGGACACGATGCTCACGCTTTGTTG-A-CTTTTG- 549
Query 614 CTACAAATACAATCAATGTCGGACCAAACTTATTGGAAAGAGTCACTACAAGTCTTATGA 673
| || | | | | | | || | | ||| ||| | | || ||| |||| | ||
Sbjct 550 C--CATCTTCTA-CGA-G-AGG-CTTCA-TTACCGGATA-A--CA--ACAGGTCTAAAGA 597
Query 674 ACTCTGATGTCAT-TGCGATAAGGAC-AGCCAGAGAAATCGAAGG-AAACTTTTGCGACT 730
| | |||| | || | | || ||||| | | |||| | ||||| ||| || |||||||
Sbjct 598 ATTGTGATTTTATCT-CAATTAGGACTTG-TAAAGAAGTTGAAGGTAAA-TTCTGCGACT 654
Query 731 ATATCGAAAAAC-ATTGCAGGAAAAAGGTTCTCTTGACAGGTCCGGTG-TTCCCTGAGCC 788
||||||| || | || || || |||||||| ||||||||||| || || || |||||
Sbjct 655 ATATCGAGAAGCAATACCA-GAGGAAGGTTCTTTTGACAGGTCCAATGCTT-CCAGAGCC 712
Query 789 AGACAAGACTAGA-GAGCTAGAGGAACGATGGGTTAAGTGGCTAAGTGGGTAT-GAACCA 846
|||||| | |||| | || || || ||||||| | | ||||||| | | | |||||
Sbjct 713 AGACAACAGTAGACCA-CTTGAAGATCGATGGGATCATTGGCTAAAT-CATTTCGAACCC 770
Query 847 GACTCAGTGGTGTTTTGTGCGTTGGG--CTCACAAGTCATTTTAGAGAAAGATCAATTCC 904
| || || | | |||||| ||||| ||| || ||| ||||||||| ||||||||||
Sbjct 771 GGTTCGGTAATATATTGTGCATTGGGAAGTCA-AA-TCACTTTAGAGAAGGATCAATTCC 828
Query 905 AAGAACTCTGCTTAGGAATGGAGCTAACAGGTTCACCGTTTCTTGTAGCGGTTAAGCCAC 964
|||||||||| |||||||||||||| || |||| |||||||||||||||||| |||||||
Sbjct 829 AAGAACTCTGTTTAGGAATGGAGCTCACTGGTTTACCGTTTCTTGTAGCGGTAAAGCCAC 888
Query 965 CTAGAGGCTCATCA-ACGATTCAAGAAGCACTT-CCTGAAGGATTCGAGGAGAGGGTTAA 1022
| | |||| || | ||||| |||||||| || || ||||| || | |||||||| | |
Sbjct 889 CAAAAGGCGCA-AAGACGATCCAAGAAGC-GTTGCCAGAAGGGTTTGCGGAGAGGG-TGA 945
Query 1023 AGGAA-GA-GGAGTTGTTTGGGGAGAATGGGTTCAACAACCATTGCTATTGTCTCATCCA 1080
| ||| | ||||| ||||||||||||||||| || ||||||||| ||||| ||||||||
Sbjct 946 A-GAATCATGGAGTGGTTTGGGGAGAATGGGTGCAGCAACCATTGATATTGGCTCATCCA 1004
Query 1081 TCAGTCGGGTGCTTTGTGAGCCATTGTGGGTTTGGATCAATGTGGGAGTCTTT-GCTGAG 1139
||||| || |||||||||| |||||||||||||||||||||||||||||| | | ||||
Sbjct 1005 TCAGTAGGATGCTTTGTGAATCATTGTGGGTTTGGATCAATGTGGGAGTCTCTAG-TGAG 1063
Query 1140 TGATTGTCAGATAGTCTTGGTACCACAGTTGGGTGATCAGGTCCTCAACACAAGATTGCT 1199
|||||| || ||||| ||| | ||| | ||| ||||||| || |||||||| |||||| |
Sbjct 1064 TGATTGCCAAATAGTATTGCTTCCATATTTGTGTGATCAAGTTCTCAACACTAGATTGAT 1123
Query 1200 GAGTGACGAACTCAAGGTTTCGGTTGAAGTGGCAAGAGAGGAAACAGGATGGTTCTCGAA 1259
|||||| ||||| ||||||| || ||||||| |||||| ||||||||||||||||||||
Sbjct 1124 GAGTGAGGAACTTGAGGTTTCTGTGGAAGTGGAAAGAGAAGAAACAGGATGGTTCTCGAA 1183
Query 1260 AGAGAGCTTGT-TCGATGCTATCAA-TAGTGTGATG-A-AAAGGGACAGTGAGATCGGGA 1315
||||||||| | | | ||| |||| | | || ||| | |||| | |||||| | ||||
Sbjct 1184 AGAGAGCTTATGT-GTTGCGATCACCTTG-GTAATGGACAAAG--ATAGTGAGTTAGGGA 1239
Query 1316 ATCTGGTGAAGAAGAATCAC 1335
||||||||| || ||| |||
Sbjct 1240 ATCTGGTGAGGACGAACCAC 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5