BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27650.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492022 jgi|Araly1|492022|fgenesh2_kg.7__1455__AT4G27650.1 2082 0.0
> Ahg492022 jgi|Araly1|492022|fgenesh2_kg.7__1455__AT4G27650.1
Length=1313
Score = 2082 bits (1127), Expect = 0.0
Identities = 1238/1290 (96%), Gaps = 14/1290 (1%)
Strand=Plus/Plus
Query 61 CTCTGCAGCAGCTTACGACCACTGACCCTTTTGCTTTTGATTCAATCGATAGACGACGGA 120
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 37 CTCTGCAGCAGCTTACGACCACTGACCCTTTTGATTCCGATTCAATCGAAAGACGACGGA 96
Query 121 TACAAGTTCTCGCTATCGCCGAGCCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTA 180
||||||||||||| |||||||||| |||||||||| | ||| || ||| | |||
Sbjct 97 TACAAGTTCTCGCCATCGCCGAGCTGGAGCCGGAG--T---CTG-AG--CTG-A---GTA 144
Query 181 ACTCTTCCAACAGTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGT 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 ACTCTTCCAATAGTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGT 204
Query 241 AATGGACCCGGAAGCGTTAAGATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTAT 300
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 205 AATGGACCCGGAAGCGTTAAGATGGTGGCAGAGGACTCTGATGATTTGTGGTATGCTTAT 264
Query 301 AACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAGAAAAGTTCAGAGAGAG 360
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 AACTTGATTGCGGTGGGAGATAGTGTAATGGCTGTCACTTTCAGAAAAGTTCAGAGAGAG 324
Query 361 ATACCTGGTGGGGGAAGAGACTCTGAACGTGTTAAACTGAAGCTGGAAGTACAAGTTGAG 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 325 ATACCTGGTGGGGGAAGAGACTCTGAACGTGTTAAACTGAAGTTGGAAGTACAAGTTGAG 384
Query 421 GAGGTGGACTATGACAAAGACGGATCTGTTTTGCGCATACGTGGCAAAAATATCCTGGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GAGGTGGACTATGACAAAGACGGATCTGTTTTGCGCATACGTGGCAAAAATATCCTGGAG 444
Query 481 AATGAGCACGTAAAGATTGGTGCATTCCATACTTTGGAACTTGAGCTGAAACGACCTTTT 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 445 AATGAGCACGTAAAGATTGGTGCATTCCATACTTTGGAGCTTGAGCTGAAACGACCTTTT 504
Query 541 GTGTTGAGAAAGGAAATGTGGGACTCAATGGCTCTTGATACACTCAAACAGGCCTCAGAT 600
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 505 GTATTGAGAAAGGAAATTTGGGACTCAATGGCTCTTGATACACTCAAGCAGGCCTCAGAT 564
Query 601 CCCGCTGCTAGTGCTGATCTAGCTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTC 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CCCGCTGCTAGTGCCGATCTAGCTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTC 624
Query 661 CTTGTGGGCAGAAGTGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAG 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CTTGTCGGCAGAAGTGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAG 684
Query 721 CATGGACCTGCAATTGCTGGTTACGAGTCTGCTTTGAAGAAATTTTTTGAGAATGTTCTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 CATGGACCTGCAATTGCTGGTTACGAGTCTGCTTTGAAGAAATTTTTTGAGAATGTTCTG 744
Query 781 CAGGCCTTTGTGAAACATGTTGACTTCAGTGTCGTTCGCTGTGCAGT-AGTTGCAAGTCC 839
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 745 CAGGCCTTTGTGAAACATGTTGACTTCAGTGTCGTTCGCTGTGCAGTGA-TTGCAAGTCC 803
Query 840 CGGCTTCACAAAGGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 804 CGGCTTCACAAAGGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAATT 863
Query 900 GAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTGGATATAG 959
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GAGACCTATCATTGAGAACAAATCACGTATAATATTGGTGCACACAAACTCTGGATATAG 923
Query 960 ACATAGCCTGGGTGAGGTTCTCCATGCCCCCAACGTGATGAATATGATAAAAGATACAAA 1019
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 924 ACATAGCCTGGGCGAGGTTCTCCATGCTCCCAACGTGATGAATATGATCAAAGATACTAA 983
Query 1020 AGCAGCAAAAGAGGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACTGAACCAGA 1079
||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| |||||
Sbjct 984 AGCAGCAAAAGAGGTTAAAGCTCTCAACGATTTTCACACCATGCTTTCAAATGATCCAGA 1043
Query 1080 TCGGGCATGCTATGGACCAAAACACGTGGAAGTTGCAAATGAACGAATGGCAATTCAAAC 1139
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1044 TCGGGCATGCTATGGACCAAAACACGTGGAAGTTGCTAATGAACGAATGGCAATCCAAAC 1103
Query 1140 GCTTCTCATAACGGACGAGCTTTTCAGGAATTCTGACGTGAAAACAAGGAAGAAGTATGT 1199
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1104 GCTTCTCATTACGGACGAGCTTTTCAGGAATTCTGACGTAAAAACAAGGAAGAAGTATGT 1163
Query 1200 GAATTTGGTGGAGTCGGTAAAAGATTCGGGAGGAGATGCTTTTATATTTTCGGCGATGCA 1259
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1164 GAATTTGGTGGAGTCGGTGAAAGATTCGGGAGGAGAGGCTTTTATATTTTCGGCGATGCA 1223
Query 1260 TGTGTCAGGAGAACAATTGGCACAGCTGACTGGAATAGCAGCTCTTCTCAGGTTCCCTTT 1319
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1224 TGTGTCAGGGGAACAATTGGCACAGCTGACTGGAATTGCAGCTCTTCTCAGGTTCCCTTT 1283
Query 1320 ACCAGAACTCGAAGACATTGAGATGTaaaa 1349
||||||||||||||||||||||||||||||
Sbjct 1284 ACCAGAACTCGAAGACATTGAGATGTAAAA 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5