BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27670.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945273 jgi|Araly1|945273|scaffold_701502.1 1114 0.0
> Ahg945273 jgi|Araly1|945273|scaffold_701502.1
Length=722
Score = 1114 bits (603), Expect = 0.0
Identities = 686/726 (94%), Gaps = 5/726 (1%)
Strand=Plus/Plus
Query 56 TTTGGCTCATACTCGAAACAAATGGCTTCTACACTCTCATTTGCTGCATCGGCTCTATGT 115
|||||||||||||| ||||| |||||||||||||||||| || ||||||||||||| ||
Sbjct 1 TTTGGCTCATACTCTAAACATATGGCTTCTACACTCTCA-TT--TGCATCGGCTCTACGT 57
Query 116 TCACCTCTTGCTCCATCTCCTTCTGTCTCATCGAAGTCCGCTACACCGTTCTCGGTTTCG 175
|||||||||||||||||||| ||| ||||||| || ||| |||| |||||||| || ||
Sbjct 58 TCACCTCTTGCTCCATCTCCCTCTATCTCATCCAAATCCACTACTCCGTTCTCCGTCGCG 117
Query 176 -TTCCCACGGAAGATCCCTAGCCGGATCAGGGCTCAAGACCAGAGAGAAAACTCCATTGA 234
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTT-CCACGGAAGATCCCTAGCCGGATCAGGGCTCAAGACCAGAGAGAAAACTCCATTGA 176
Query 235 TGTTGTTCAGCAAGGACAACAAAAAGGGAACCAAGGATCAAGTGTCGAAAAAAGACCTCA 294
||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 177 TGTTGTTCACCAAGGACAACAAAAAGGAAATCAAGGATCTAGTGTCGAAAAAAGACCTCA 236
Query 295 ACAACGCTTAACCATGGACGTCTCTCCTTTCGGATTGTTGGATCCTTTGTCACCAATGAG 354
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACAACGCTTAGCCATGGACGTTTCTCCTTTCGGATTGTTGGATCCTTTGTCACCAATGAG 296
Query 355 GACGATGCGACAAATGTTAGATACTATGGACAGGATGTTCGAGGACACTATGCCTGTCTC 414
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 GACAATGAGACAAATGTTAGATACTATGGACCGGATGTTCGAGGACACTATGCCTGTCTC 356
Query 415 AGGAAGAAACAGAGGAGGAAGTGGAGTGTCAGAGATTCGTGCACCGTGGGACATCAAAGA 474
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 357 AGGAAGAAACAGAGGAGGAAGTGGAGTTTCAGAGATTCGTGCGCCGTGGGACATTAAAGA 416
Query 475 GGAAGAACACGAGATCAAGATGCGTTTCGACATGCCTGGTCTCTCTAAAGAAGACGTCAA 534
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 417 GGAAGAACACGAGATCAAGATGCGTTTCGACATGCCTGGTCTCTCGAAAGAGGATGTCAA 476
Query 535 AATCTCTGTAGAAGATAACGTACTTGTGATCAAAGGAGAGCAGAAGAAGGAAGACAGTGA 594
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 AATCTCTGTAGAAGATAACGTCCTTGTGATCAAAGGAGAGCAGAAGAAGGAAGACAGTGA 536
Query 595 TGATTCTTGGTCTGGAAGAAGCGTTAGCTCATATGGAACACGACTTCAGCTCCCAGACAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGATTCTTGGTCTGGAAGAAGCGTTAGCTCATATGGAACACGACTTCAGCTCCCAGACAA 596
Query 655 CTGTGAGAAAGACAAGATCAAAGCTGAGCTCAAGAACGGAGTCCTCTTTATCACTATCCC 714
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 CTGCGAGAAAGACAAGATCAAAGCTGAGCTCAAGAACGGAGTCCTGTTTATCACTATCCC 656
Query 715 TAAGACCAAAGTCGAACGCAAAGTCATCGATGTCCAGATTCAGTAGGACTCGATCAACAT 774
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 657 TAAAACCAAAGTCGAACGCAAAGTCATCGATGTCCAGATTCAGTAGGACTCCTTTAACGT 716
Query 775 TATCCT 780
||||||
Sbjct 717 TATCCT 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5