BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27700.1 Length=992 Score E Sequences producing significant alignments: (Bits) Value Ahg492014 jgi|Araly1|492014|fgenesh2_kg.7__1447__AT4G27700.1 1548 0.0 > Ahg492014 jgi|Araly1|492014|fgenesh2_kg.7__1447__AT4G27700.1 Length=990 Score = 1548 bits (838), Expect = 0.0 Identities = 948/999 (95%), Gaps = 16/999 (2%) Strand=Plus/Plus Query 1 AAGCACCACATGTTCAGA-TTTTTTCCTAACAAGAAGAAAAGAAGTCGCAGTTTCATCGT 59 |||||||||||||||||| |||||||||||||||||| ||||||||| ||| | || | Sbjct 1 AAGCACCACATGTTCAGATTTTTTTCCTAACAAGAAG-AAAGAAGTCTCAG-TGCA--G- 55 Query 60 CTTTCTTCCAT-TATCGTGCAATTAAATTCTCTCATTTTCAAGAAAATATCT-GAA-AAA 116 |||| | ||| | || | | ||| |||||||||||||||||| |||||||| || ||| Sbjct 56 -TTTCAT-CATCTCTC-TTCCATT-AATTCTCTCATTTTCAAGGAAATATCTAAAAGAAA 111 Query 117 ACAGAAACTTAACAGAAGCAGC-T-TCGATCAAGAGATGGCTTCACTTACTTCAATAGCC 174 |||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||| ||| Sbjct 112 ACAGAAACATAACAGAAGAAGCTTCTCGATCAAGAGATGGCTTCACTTACTTCAATCGCC 171 Query 175 ACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTC 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 ACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTC 231 Query 235 TCTGCCGGAGTTCGATCGGCAGCAATGGTTTCCGGTCACAAAACGCTTAAGATTCAATGC 294 |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| Sbjct 232 TCTGCCGGAGTTCGATCGGCAGCAATGGGTTCCGGTCAAAAAACGCTCAAGATTCAATGC 291 Query 295 ACTTCAACCAAACCTGCCAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTT 354 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 292 ACTTCAACGAAACCTGCGAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTT 351 Query 355 CTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAA 414 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 CTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAG 411 Query 415 AACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCG 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCG 471 Query 475 GGAGCTATCAATGTGGAGATGTACAGACTCATAAGGGAATGGACGGCATGGGACATAGCT 534 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 472 GGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGAATGGACGGCATGGGACATAGCT 531 Query 535 CGCCGTCTTGGCTTTGCTTTCTTTGGTATCTTCTCTGGCACAGAAGAGAACCCTGAGTTT 594 || |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 532 CGTCGTCTTGGATTTGCGTTCTTCGGTATCTTCTCTGGCACAGAAGAGAATCCTGAGTTT 591 Query 595 ATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTAGCTTGTTCATCC 654 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 592 ATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTTGCTTGTTCATCC 651 Query 655 GCGGGTACAATGAAGCCGACACAAAATCTTCCCGAAGGCCAACAATCGAGGTCTCTCATA 714 ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 652 GCGGGGACAATGAAGCCAACACAGAATCTTCCTGAAGGACAACAATCGAGGTCTCTCATA 711 Query 715 GCTGCTTATCTTCTGGTCCTTAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATC 774 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 712 GCTGCTTATCTTCTGGTCCTCAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATC 771 Query 775 TACACATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAACCAACTTCT 834 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 TACGCATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAACCAACTTCT 831 Query 835 TTACTCT-AGAGTTGTCCAGTTTTGTATATCTGTCCATTTCAGTTAGTTGCATTTAGAGA 893 | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 TCACTCTAAGAGTTATCCAGTTTTGTATATCTGTCCATTTCAGTTAGTTGCATTTAGAGA 891 Query 894 TTTGGCTTTTCAGAGAGTGTTTTGAGGTTTGTAAAACTTCAGACTTTACCATGAAATCCA 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 TTTGGCTTTTCAGAGAGTGTTTTGAGGTTTGTAAAACTTCAGACTTTACCATGAAATCCA 951 Query 954 GCAAACTCGACCGGAATCCAGAGAAAAGGAACTTGATTG 992 |||||||||||||||||| |||||||| ||||||||||| Sbjct 952 GCAAACTCGACCGGAATCTAGAGAAAAAGAACTTGATTG 990 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36864860739 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5