BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27720.1 Length=1841 Score E Sequences producing significant alignments: (Bits) Value Ahg945268 jgi|Araly1|945268|scaffold_701497.1 2420 0.0 > Ahg945268 jgi|Araly1|945268|scaffold_701497.1 Length=1424 Score = 2420 bits (1310), Expect = 0.0 Identities = 1376/1409 (98%), Gaps = 0/1409 (0%) Strand=Plus/Plus Query 152 TGGATCGAACGACAATGGAGATTTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCG 211 |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 7 TGGATCGAACAACAATGGAGGTGTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCG 66 Query 212 TCGCGGCGTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCA 271 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TCGCGGCTTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCA 126 Query 272 ATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGC 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 ATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGC 186 Query 332 AGGGTCCATATGTGTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGAC 391 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 AGGGTCCATATGTTTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGAC 246 Query 392 AGCTTTTCATTGCTGGTTTTGGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAG 451 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 247 AGCTTTTCATTGCTGGTTTTGGCTCCTCTATGTTGTTTGGTACAATCGTTGGATCTCTAG 306 Query 452 CCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCT 511 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 307 CCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTACATATTGAGCT 366 Query 512 GCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCA 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 GCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCA 426 Query 572 TTGCTACTTCCCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGA 631 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 TTGCTACTTCTCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGA 486 Query 632 GGGGCTTTGAGCAGCAATGGCTGTCTGTGACATTTTCAAAGGCAGTGTTTTTTGGCAACG 691 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 487 GGGGCTTTGAGCAGCAATGGCTGTCTGTAACATTTTCAAAGGCGGTGTTTTTTGGCAATG 546 Query 692 GTCTCGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTTGATACCTTCTCTCTTG 751 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 547 GTCTTGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTGGATACCTTCTCTCTTG 606 Query 752 GGCCTGTTGCGCCATTTGACGCTGCTGCATGCTTTCTTACTATTGGAATGGCTGTCATTC 811 ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| Sbjct 607 GGCCTGTTGCGCCATTTGATGCTGCTGCGTGCTTTCTTGCTATTGGAATGGCTGTCATTC 666 Query 812 TATCATCATGGACAGAAAACTATGGAGATCCATCAGAAAACAAGGACTTGCTTACCCAGT 871 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 667 TATCATCATGGACAGAAAACTATGGAGATCCTTCAGAAAACAAGGACTTGCTTACCCAGT 726 Query 872 TCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTATTGGGTGCTATCC 931 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 727 TCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTGTTGGGTGCCATCC 786 Query 932 AGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGTC 991 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 787 AGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGCC 846 Query 992 CGAACGATGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTAGCTTCGATGC 1051 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 847 CGAACGAGGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTGGCTTCGATGC 906 Query 1052 TAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGTTCAACTCCCAAAGTAGAGAGCTACA 1111 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 907 TAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGCTCAACTCCCAAAGTAGAGAGCTACA 966 Query 1112 TGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGT 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 TGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGT 1026 Query 1172 TCATAGCACCTTCCAAGGTGAAAGGTGGAGGAATCTCTTTCTCGGGTTGCTTTCAGCTCC 1231 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1027 TCATAGCACCTTCCAAGGTGAAAGGTGGGGGAATCTCTTTCTCGGGTTGCTTTCAGCTCC 1086 Query 1232 TTGGGTTCTGTATATTCGAGGCGTGTGTAGGACTGTTTTGGCCATCCATAATGAAGATGA 1291 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1087 TTGGGTTCTGTATATTCGAGGCGTGTGTAGGATTGTTTTGGCCATCCATTATGAAGATGA 1146 Query 1292 GATCCCAATACATCCCAGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTC 1351 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 GATCCCAATACATCCCTGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTC 1206 Query 1352 TGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGT 1411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 TGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGT 1266 Query 1412 TTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGA 1471 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1267 TTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTGCAAAGGCGGCTCATGATGA 1326 Query 1472 TTGTTGACAAACCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAG 1531 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1327 TTGTTGACAAGCCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAG 1386 Query 1532 ATCCCCTCAACATATGATGAATTAACTAT 1560 ||||||| |||||||||||||| |||||| Sbjct 1387 ATCCCCTTAACATATGATGAATAAACTAT 1415 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69133794675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5