BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27730.1 Length=2538 Score E Sequences producing significant alignments: (Bits) Value Ahg492011 jgi|Araly1|492011|fgenesh2_kg.7__1444__AT4G27730.1 3862 0.0 Ahg331706 jgi|Araly1|331706|fgenesh1_pm.C_scaffold_8001049 1552 0.0 Ahg916994 jgi|Araly1|916994|Al_scaffold_0008_1745 780 0.0 > Ahg492011 jgi|Araly1|492011|fgenesh2_kg.7__1444__AT4G27730.1 Length=2466 Score = 3862 bits (2091), Expect = 0.0 Identities = 2315/2425 (95%), Gaps = 7/2425 (0%) Strand=Plus/Plus Query 96 CACTCTTCTAAAACGATGGGAGAGATAGCAACAGAGTTCACGCCGGTTATGGATGATGAT 155 |||| ||| ||||||||||||||||||||||||||||||||| ||||||| | |||||| Sbjct 48 CACTTTTCAAAAACGATGGGAGAGATAGCAACAGAGTTCACGGCGGTTAT-G--GATGAT 104 Query 156 GATGACCGGTGCGTTGTACCGGAGGTAGAGCTCACTGTACCCAAGACCGACGATTCAACT 215 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 105 GATGACCGGTGCGTTGTACCGGAGGTAGAGCTCACTGTACCCAAAACCGACGATTCATCT 164 Query 216 TTACCGGTTTTAACATTTCGGATGTGGGTTCTTGGTATAGGCGCGTGCATTGTACTCTCC 275 ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 165 TTACCGGTTCTCACATTCCGGATGTGGGTTCTTGGTATAGGCGCGTGCATTGTACTCT-C 223 Query 276 TTT-ATCAACCAGTTTTTCTGGTACAGAACGATGCCGTTGAGTATCACCGGAATCTCCGC 334 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 224 TTTCATCAACCAGTTTTTCTGGTACAGAACGATGCCGTTGAGTGTCACCGGAATCTGCGC 283 Query 335 TCAGATCGCCGTCGTGCCGCTTGGTCATCTCATGGCGAGAGTGCTTCCGACAAAAAGATT 394 ||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||| Sbjct 284 TCAGATCGCCGTCGTGCCGATTGGACATCTCATGGCGAGGGTGCTTCCGACAAGGAGATT 343 Query 395 CTTGGAAGGTACGAGGTTTCAGTTTACCTTAAACCCGGGTGCCTTCAACGTCAAGGAACA 454 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 344 CTTGGAAGGTACGAGGTTTCAGTTCACCTTAAACCCAGGTGCCTTCAACGTCAAGGAACA 403 Query 455 TGTTCTGATAACTATCTTTGCAAATTCCGGCGCCGGCTCTGTTTACGCTACTCACATACT 514 |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 404 TGTTCTGATAACCATCTTTGCAAATTCCGGCGCCGGCTCCGTTTACGCTACTCATATACT 463 Query 515 TAGTGCTATTAAGCTTTACTACAAACGTTCTCTTCCTTTCCTCCCTGCATTTCTCGTCAT 574 ||||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||| Sbjct 464 TAGTGCTATTAAGCTTTACTATAAACGTCCTCTTCCTTTCCTCCCAGCGTTTCTCGTCAT 523 Query 575 GATCACCACTCAGATTCTTGGATTTGGTTGGGCTGGTCTCTTCAGGAAACACCTTGTTGA 634 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 524 GATCACCACTCAGATTCTTGGATTTGGTTGGGCTGGTCTCTTTAGGAAACACCTTGTTGA 583 Query 635 GCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTCTCTCTCTTTGGTGCGTTACA 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 584 GCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTCTCTCTCTTTGGTGCCTTGCA 643 Query 695 CGAGAAAGAAAAGAAATCAAGAGGAGGCATGAGTAGAACTCAATTCTTCTTAATCGTCCT 754 |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 644 CGAGAAAGAAAAGAAATCTAGAGGAGGCATGAGTCGAACACAATTCTTCTTAATCGTCCT 703 Query 755 CGTAGCTAGCTTTGCTTACTACATCTTTCCTGGTTATCTTTTCACCATGTTAACATCAAT 814 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 704 CGTAGCTAGCTTTGCTTACTACATCTTTCCTGGTTATCTATTCACCATGTTAACATCAAT 763 Query 815 CTCATGGGTCTGTTGGCTCAATCCCAAATCAATTCTGGTAAACCAACTCGGTTCAGGTGA 874 ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 764 CTCATGGGTTTGCTGGCTTAATCCCAAATCAATTCTGGTAAACCAACTCGGTTCAGGTGA 823 Query 875 ACATGGTCTTGGCATTGGTTCCATTGGTTTTGATTGGGTCACTATTAGTGCTTATCTTGG 934 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 824 ACATGGTCTTGGTATTGGTTCCATTGGTTTTGATTGGGTCACCATTAGTGCTTATCTTGG 883 Query 935 AAGCCCTTTAGCTAGTCCTTTGTTCGCTTCCGTCAATGTAGCCATTGGTTTCGTGCTGGT 994 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 884 AAGCCCTTTAGCTAGTCCATTGTTCGCTTCCGTCAATGTAGCCATCGGTTTCGTGCTGGT 943 Query 995 TATGTATATCGTCACGCCTGTTTGTTACTGGCTTAACATTTATGATGCCAAGACCTTCCC 1054 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 944 TATGTATATTGTCACGCCTGTTTGTTACTGGCTTAACATTTATGACGCCAAGACCTTCCC 1003 Query 1055 TATCTTCTCTAGTCAGCTCTTCATGGGGAATGGCTCACGTTATGATGTTTTGAGCATTAT 1114 |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1004 TATCTTCTCTAGCCAGCTCTTCATGGGTAATGGCTCACGTTATGATGTGTTGAGCATTAT 1063 Query 1115 TGATAGCAAATTCCATCTTGACCGTGTGGTTTACTCTAGGACCGGGTCCATCAATATGAG 1174 ||||||||| |||||||||||||| | |||||||||||||||||| ||||| || ||||| Sbjct 1064 TGATAGCAAGTTCCATCTTGACCGGGCGGTTTACTCTAGGACCGGCTCCATTAACATGAG 1123 Query 1175 CACCTTCTTTGCTGTTACTTATGGTCTCGGGTTTGCTACATTGTCTGCCACCATTGTCCA 1234 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1124 CACCTTCTTTGCTGTTACTTATGGTCTCGGGTTTGCTACGTTGTCTGCCACCATTGTCCA 1183 Query 1235 TGTTTTAGTCTTCAACGGAAGTGACTTGTGGAAGCAGACAAGAGGGGCGTTTCAGAAGAA 1294 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| | Sbjct 1184 TGTCTTAGTCTTCAACGGAAGTGACTTGTGGAAACAGACAAGAGGGGCCTTTAAAAAGGA 1243 Query 1295 TAAGAAAATGGATATACACACGAGAATCATGAAGAAAAACTACAGGGAAGTTCCATTGTG 1354 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1244 TAAGAAAATGGATATACACACAAGAATCATGAAGAAAAACTACAGGGAAGTTCCATTGTG 1303 Query 1355 GTGGTTTTTGGTAATCCTTTTACTGAATATCGCGCTTATCATGTTCATCTCCGTGCACTA 1414 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1304 GTGGTTTTTGGTCATCCTTTTACTGAATATCGCGCTCATCATGTTCATCTCCGTGCACTA 1363 Query 1415 CAACGCTACTGTGCAGCTTCCTTGGTGGGGAGTGTTACTTGCTTGTGCCATTGCCATCAG 1474 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1364 CAACGCGACCGTGCAGCTTCCTTGGTGGGGAGTGTTACTTGCTTGTGCCATTGCCATCTC 1423 Query 1475 TTTCACTCCTTTGATCGGTGTCATAGCTGCCACCACTAATCAGGCACCGGGATTGAATAT 1534 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || Sbjct 1424 TTTCACTCCTTTGATCGGTGTCATAGCTGCTACCACTAATCAGGCACCGGGTTTGAACAT 1483 Query 1535 CATAACAGAGTATGTTATCGGGTATATCTACCCGGAACGTCCTGTTGCAAACATGTGTTT 1594 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1484 CATAACCGAGTATGTTATCGGGTATATATACCCGGAACGTCCTGTTGCCAACATGTGTTT 1543 Query 1595 CAAGGTCTATGGATACATTAGTATGACTCAAGCGCTAACTTTCATTTCCGACTTCAAGCT 1654 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1544 CAAGGTCTATGGATACATTAGTATGACTCAAGCGCTAACTTTCATTTCCGATTTCAAGCT 1603 Query 1655 TGGTCATTACATGAAGATCCCGCCTAGATCCATGTTCATGGCTCAGGTGGCTGGGACACT 1714 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1604 TGGTCATTACATGAAGATCCCGCCTAGATCCATGTTCATGGCTCAGGTGTTTGGGACTCT 1663 Query 1715 TGTGGCGGTGGTTGTGTACACAGGAACAGCCTGGTGGTTAATGGAAGAGATTCCTCATCT 1774 ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1664 TGTGGCGGTTGTTGTTTACACAGGAACAGCTTGGTGGTTAATGGAAGAGATTCCTCATCT 1723 Query 1775 TTGTGATACATCCTTGCTTCCTTCAGACAGCCAATGGACTTGTCCCATGGACCGCGTTTT 1834 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1724 CTGTGACACGGCCTTGCTTCCTTCAGACAGCCAATGGACTTGTCCCATGGACCGCGTTTT 1783 Query 1835 CTTTGACGCCTCTGTGATTTGGGGACTAGTGGGACCACGCAGGGTGTTTGGAGACCTTGG 1894 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1784 CTTTGACGCCTCTGTGATTTGGGGACTAGTGGGACCACGTAGGGTGTTTGGAGACCTTGG 1843 Query 1895 AGAATACTCAAATGTCAACTGGTTCTTCCTCGTTGGAGCCATAGCTCCACTCTTAGTTTG 1954 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1844 AGAATACTCAAATGTCAACTGGTTCTTCCTCGTCGGAGCCATAGCTCCACTCTTAGTTTG 1903 Query 1955 GCTAGCCACAAAGATGTTTCCGGCTCAGACATGGATCGCCAAGATTCATATCCCTGTCCT 2014 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 1904 GCTAGCCACAAAGATGTTCCCGGCTCAGACATGGATCTCCAAGATTCATATCCCTGTTCT 1963 Query 2015 TGTGGGAGCCACCGCAATGATGCCACCAGCAACAGCAGTTAACTTCACTAGTTGGCTCAT 2074 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1964 TGTGGGAGCCACCGCAATGATGCCACCAGCAACAGCAGTTAACTTCACCAGCTGGCTCAT 2023 Query 2075 CGTCGCATTCATCTTTGGCCACTTCATCTTCAAGTACAGAAGAGTGTGGTGGACCAAGTA 2134 ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||| Sbjct 2024 CGTCGCATTCATCTTTGGCCACTTCATTTTCAAGTACAGGAGAGAGTGGTGGACGAAGTA 2083 Query 2135 TAACTATGTGTTGTCTGGTGGTTTAGATGCTGGCTCTGCTTTTATGACCATACTTCTGTT 2194 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 2084 TAACTATGTGTTGTCTGGTGGTTTAGACGCTGGCTCAGCTTTTATGACCATACTTCTGTT 2143 Query 2195 TCTAGCACTCGGACGAAAAGGAATTGAAGTGCAGTGGTGGGGAAATTCCGGCGACCGAGA 2254 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2144 TCTGGCACTCGGACGAAAAGGAATTGAAGTGCAGTGGTGGGGAAATTCCGGCGACCGAGA 2203 Query 2255 TACATGTCCCTTAGCTTCTTGTCCAACTGCTAAAGGTGTTGTCGTCAAAGGCTGTCCCGT 2314 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2204 TACATGTCCATTAGCTTCTTGTCCAACTGCTAAAGGTGTTGTCGTCAAAGGCTGTCCCGT 2263 Query 2315 CTTCTAGCTCATGAGTCATGAGACAAAAGCATATACCAAGTGCTTTGTACAGAACACACA 2374 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2264 CTTCTAGCTAATGAGTCATGAGACAAAAGCATATACCAAGTGCTTTGTACAGAACACACA 2323 Query 2375 GCAAACTGATAATTGTAATTCTCGGAAATGTCTTTACTCTCCAAGAACTATATCTTTTGT 2434 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2324 GCAAAATGATAATTGTAATTCTCGGAAATGTCTTTACTCTCCAAGAACTATATCTTT-GT 2382 Query 2435 GATAGCTTTAAAACTAGGTACTATCCTGTTCTTTGACTGAACACAAATGCTAGTGATTCT 2494 ||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 2383 GATAGCTTTTAA-CTAGGTACTATCCTGTTCTATGACAGAACACAAATGCTAGTGATTCT 2441 Query 2495 ATATGTGGTTCCTTAAAATGATTTT 2519 || |||| ||||||| ||||||||| Sbjct 2442 ATTTGTGTTTCCTTATAATGATTTT 2466 > Ahg331706 jgi|Araly1|331706|fgenesh1_pm.C_scaffold_8001049 Length=2226 Score = 1552 bits (840), Expect = 0.0 Identities = 1712/2129 (80%), Gaps = 76/2129 (4%) Strand=Plus/Plus Query 149 TGATGATGAT-GACCGGTGCGTTGTACCGGAGGTAGAGCTCACTGTACCCAAGACCGACG 207 ||||||| | ||||||||||| || |||||| ||||| || || || || ||||| | Sbjct 54 TGATGAT-CTAGACCGGTGCGTGGTGGAGGAGGTTGAGCTAACCGTTCCAAAAACCGATG 112 Query 208 ATTCAACTTTACCGGTTTTAACATTTCGGATGTGG-GTTCTTGGTATAGGCGCGTGCATT 266 || |||| ||||||||| | || ||| | |||||| || | ||| | || ||||| || Sbjct 113 ATCCAACGTTACCGGTTCTCACTTTTAGAATGTGGACTT-TAGGTCTTGGTGCGTGTATC 171 Query 267 GTACTCTCCTTTATCAACCAGTTTTTCTGGTACAGAAC-GATGCCGTTGAGTATCACCGG 325 ||||||| || || |||||||||||||||||||| || ||||||||| | || | ||| Sbjct 172 ATACTCTCGTTCATAAACCAGTTTTTCTGGTACAG-ACAGATGCCGTTAACCATTAGCGG 230 Query 326 AATCTCCGCTCAGATCGCCGTCGTGCCGCTTGGTCATCTCATGGCGAGAGTGCTTCCGAC 385 |||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| Sbjct 231 AATCTCGGCTCAGATCGCGGTCGTGCCGCTTGGTCACCTGATGGCTAGAGTGCTTCCGAC 290 Query 386 AA-AAAGATTCTTGGAAGGTA-CGAGGTTTCAGTTTACCTTAAACCCGGGTGCC-TTCAA 442 || | | ||||||||||| | | | || ||||| | | || || ||| || || || Sbjct 291 AAGGATG-TTCTTGGAAGG-ATCAAAGTGGGAGTTTTGCATGAATCCAGGT-CCTTTTAA 347 Query 443 CGTCAAGGAACATGTTCTGATAACTATCTTT-GCAAATTCCGGCGCCGGCTCTGTTTACG 501 ||||||||||||||| |||| || || ||| || ||||| || || || | ||||| | Sbjct 348 TGTCAAGGAACATGTTTTGATCACGAT-TTTCGCTAATTCGGGAGCTGGAACGGTTTATG 406 Query 502 CTACTCACATACTTAGTGCTATTAAGCTTTACTACAA-ACGTTCTCTTCC-TTTCCTCCC 559 | ||||| ||||||||||| |||||||| || || || | | |||||||| ||| || || Sbjct 407 CGACTCATATACTTAGTGCAATTAAGCTCTATTATAAGA-GATCTCTTCCGTTT-CTACC 464 Query 560 TGCATTTCTCG-TCATGATCACCACTCAGATTCTTGGATTTGGTTGGGCTGGTCTCTTCA 618 || ||||| | | |||||||| |||||| |||| |||||||| ||||||||||| ||| Sbjct 465 GGCTTTTCT-GCTTATGATCACTACTCAGTTTCTCGGATTTGGGTGGGCTGGTCTATTCC 523 Query 619 GGAAACACCTTGTTGAGCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTCTCTC 678 | || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 524 GTAAGCACCTTGTTGAGCCTGGTGAAATGTGGTGGCCAAGCAATCTAGTTCAAGTGTCTC 583 Query 679 TCTTTGGTGCGTTACACGAGAAAGAAAAGAA-ATCAAGAGGAGGCATGAGTAGAACTC-A 736 |||| |||| || |||||||| |||||||| | ||| |||||||||| ||| || | Sbjct 584 TCTTCAGTGCCTTGCACGAGAAGGAAAAGAAGAAAAAG-GGAGGCATGACCCGAA-TCCA 641 Query 737 ATTCTTCTTAATCGTCCTCGT-AGCTAGCTTT-GCTTACTACAT-CTTTCCTGGTTATCT 793 ||||||| | || ||||| || | | || ||| || ||||| || || || |||||||| Sbjct 642 ATTCTTCCTCATTGTCCTTGTGACC-AG-TTTCGCATACTATATTCTCCCC-GGTTATCT 698 Query 794 TTTCACCATGTTAACATCAATCTCATGGGTCTGTTGGCTCAATCCCAAATCAATTCTGG- 852 ||||| ||| |||| || |||||||||||||||||||| | ||||||||| || ||| Sbjct 699 ATTCACAATGATAACTTCCATCTCATGGGTCTGTTGGCTTAGTCCCAAATCGGTTTTGGC 758 Query 853 TAAACCAACTCGGTTCAGGTGAACATGGTCTTGGCATTGGTTCCATTGGTTTTGATTGGG 912 | | ||||||||||||||||||||| |||||||| ||||| | |||||| |||| |||| Sbjct 759 TCA-CCAACTCGGTTCAGGTGAACAAGGTCTTGGTATTGGCGCAATTGGTATTGACTGGG 817 Query 913 -TCACTATTAG-TGCTTATCTTGGAAGCCCTTTAGCTAGTCCTTTGTTCGCTTCCGTCAA 970 | || ||||| | |||| ||||| ||||| | || ||||| || |||||| || |||| Sbjct 818 CT-ACAATTAGCT-CTTACCTTGGTAGCCCACTCGCGAGTCCCTTATTCGCTACCATCAA 875 Query 971 TGTAGCCATTGGTTTCGTGCTGGTTATGTATATCGTCACGCCTG-TTTGTTACTGGCTTA 1029 |||| |||||||||| ||| || | |||||| ||| ||| || | |||| || ||||| | Sbjct 876 TGTAACCATTGGTTTTGTGGTGATCATGTATGTCGCCACTCC-GATTTGCTATTGGCTAA 934 Query 1030 ACATTTATGATGCCAAGACCT-TCCCTATCTTCTCTAGTCAGCTCTTCATGGGGAATGGC 1088 | ||||| | ||||| || | |||| |||||||||||| ||| |||||||| |||||| Sbjct 935 ATATTTACAAAGCCAAAACATATCCC-ATCTTCTCTAGTGGGCTTTTCATGGGCAATGGC 993 Query 1089 TCA-CGTTATGATGTTTTGAGCATTATTGATA-GCAAATTCCATCTTGACCGTGTGGTTT 1146 || | | |||||||||| ||||| ||||||| | || || ||||| ||||| | | | | Sbjct 994 TCGTCCT-ATGATGTTTTAAGCATCATTGATAAG-AAGTTTCATCTCGACCGAGAGATCT 1051 Query 1147 ACT-CTAGGACCGGGTCC-ATCAATATGAGCACCTTCTTTGCTGTTACTTATGGTCTCGG 1204 | | | | ||| || ||| ||| |||||||||| ||||||||||| || |||||||| || Sbjct 1052 A-TGCAAAGACTGG-TCCTATCCATATGAGCACTTTCTTTGCTGTGACATATGGTCTTGG 1109 Query 1205 GTTTGCTACATTGTCTGCCACCATTGTCCATGTTTTAGTCTTCAACGGAAGTGACTTGTG 1264 |||||||| ||||| || || ||||||||||||||| ||||||||||||| || || || Sbjct 1110 ATTTGCTACTTTGTCCGCAACTATTGTCCATGTTTTACTCTTCAACGGAAGGGATTTATG 1169 Query 1265 GAAGCAGACAAGAGGGGCGTTTCAGAAGAATAAGAAAATGGATATACACACGAGAATCAT 1324 ||| || |||||||| || ||||||| ||| |||||||||||| ||||| |||||||||| Sbjct 1170 GAAACAAACAAGAGGTGCTTTTCAGAGGAACAAGAAAATGGATTTACACGCGAGAATCAT 1229 Query 1325 GAAGAAAAACTACAGGGAAGTTCC-ATTGTGGTGGTTTT-TGGTAATCCTTTTACTGAAT 1382 |||||||||||| || |||||||| || ||||||||||| || | ||||| |||| || Sbjct 1230 GAAGAAAAACTATAGAGAAGTTCCCAT-GTGGTGGTTTTATG-TGATCCTCGTACTCAAC 1287 Query 1383 ATCGCGCTTATCATGTTCATCTCCGTGC-ACTACAACGCTACTGTGCAGCTTCCTTGGTG 1441 || ||||| |||||||||||||| | | ||||||| || || |||||||| |||||||| Sbjct 1288 ATTGCGCTCATCATGTTCATCTCTTT-CTACTACAATGCAACCGTGCAGCTACCTTGGTG 1346 Query 1442 GGGAGTGTTACTTGCTTGTGCCATTGCCATCAGT-TTCACTCCT-TTGATCGGTGTCATA 1499 ||||||||| || |||||||||||||| || | |||||||| || |||||||| || Sbjct 1347 GGGAGTGTTGCTAGCTTGTGCCATTGCTGTCT-TCTTCACTCCGCTT-ATCGGTGTTATC 1404 Query 1500 GCTGCCACCACTAATCAGGCACCGGGATTGAATATCATAACAGAGTATGTTATCGGGTAT 1559 || |||||||||||||||| |||||| ||||| |||| || || ||||| ||||||||| Sbjct 1405 GCCGCCACCACTAATCAGGAACCGGGTTTGAACGTCATTACGGAATATGTAATCGGGTAT 1464 Query 1560 ATCTACCCGGAACGTCCTGTTGCAAACATGTGTTTCAAGGTCTATGGATACATTAGTATG 1619 |||| || |||||||| ||||| |||||||| ||||| || ||||||||||| || ||| Sbjct 1465 CTCTATCCAGAACGTCCGGTTGCGAACATGTGCTTCAAAGTGTATGGATACATCAGCATG 1524 Query 1620 ACTCAAGCGCTAACTTTCATTTCC--GACTTCAAGCTTGGTCAT-TACATGAAGATCCCG 1676 ||||| || || || ||||| || |||||||| || |||| | ||||||||||| || Sbjct 1525 ACTCAGGCTCTGACATTCAT--CCAAGACTTCAAACTCGGTC-TCTACATGAAGATTCCT 1581 Query 1677 CCTAGATCCATGTTCATGGCTCAGGTGGCTGGGACACTTGTGGCGGTGGTTGTGTACACA 1736 |||||| |||||||||||| ||||||| |||||| |||||| | ||| | ||||||||| Sbjct 1582 CCTAGAAGCATGTTCATGGCACAGGTGGTTGGGACGCTTGTGTCTGTGATAGTGTACACA 1641 Query 1737 GGAACAGCCTGGTGGTTAATGGAAGAGATTCCTCATCTTTGTGATACATCCTTGCTTCCT 1796 ||||| || ||||||||||||| ||| ||||||||||| ||||| | ||| ||||||||| Sbjct 1642 GGAACTGCTTGGTGGTTAATGGTAGACATTCCTCATCTATGTGACAAATCTTTGCTTCCT 1701 Query 1797 TCAGACAGCCAATGGACTTGTCCCATGGACCGCGTTTTCTTTGACGCCTCTGTGATTTGG 1856 |||| ||| ||||||| ||||| |||||||| || |||||||| || || ||||||||| Sbjct 1702 CCAGATAGCGAATGGACATGTCCGATGGACCGTGTCTTCTTTGATGCTTCGGTGATTTGG 1761 Query 1857 GGACTAGTGGGACCACGCAGGGTGTTTGGAGACCTTGG-AGAATACTCAAATGTCAACTG 1915 ||||| ||||||||||| || ||||||| ||| |||| ||||||| || | ||||| Sbjct 1762 GGACTTGTGGGACCACGTAGAATGTTTGGTGAC-TTGGGAGAATACGCAGCCATAAACTG 1820 Query 1916 GTTCTTCCTCGTTGGAGCCATAGCTCCACTCTTAGTTTGGCTAGCCAC-AAAGATGTTTC 1974 |||||||||||| || || || ||||| |||| || |||||||| || |||| ||||| Sbjct 1821 GTTCTTCCTCGTAGGTGCAATTGCTCCTTTCTTCGTCTGGCTAGCGACCAAAGC-GTTTC 1879 Query 1975 CGGCTCAGACATGGATCGCCAAGATTCATATCCCTGTCCT-TGTGGGAGCCACCGCAATG 2033 | ||||| | ||||||| | ||||||||| | || || | | | ||||| ||| | ||| Sbjct 1880 CAGCTCATAAATGGATCTCGAAGATTCATTTTCCGGTAATCT-TAGGAGCAACCTCGATG 1938 Query 2034 ATGCCACCAGCAACAGCAGTTAACTTCACTAGTTGGCT-CATCGTCGCATTCATCTTTGG 2092 |||||||| || | |||||||||||||| |||||| | |||||| ||||| | || || Sbjct 1939 ATGCCACCCGCGATGGCAGTTAACTTCACGAGTTGG-TGCATCGTGGCATTTGTGTTCGG 1997 Query 2093 CCACTTCATCTTCAAGTACA-GAAGAGTGTGGTGGACCAAGTATAACTATGTGTTGTCTG 2151 |||||| | || ||||||| || || ||||||||| ||||||||||| || ||||| | Sbjct 1998 ACACTTCTTGTTTAAGTACAAGA-GACAGTGGTGGACAAAGTATAACTACGTTTTGTCGG 2056 Query 2152 GTGGTTTAGATGCTGGCTCTGCTTTTATGACCATACTTCTGTTTCTAG-CACTCGGACGA 2210 |||||||||| || || |||| |||||||| ||||| | || || | | || ||||| Sbjct 2057 GTGGTTTAGACGCGGGAACTGCGTTTATGACAATACTGATATTCCT-GTCGCTTGGACGC 2115 Query 2211 AAAGGAATTGAAGTGCAGTGGTGGGGAAA 2239 |||||||||| | || |||||||||||| Sbjct 2116 AAAGGAATTGGATTGTTGTGGTGGGGAAA 2144 > Ahg916994 jgi|Araly1|916994|Al_scaffold_0008_1745 Length=2220 Score = 780 bits (422), Expect = 0.0 Identities = 1639/2208 (74%), Gaps = 158/2208 (7%) Strand=Plus/Plus Query 189 ACTGTACCCAAGACCGACGATTCAACTTTACCG--GTTTTAACATTTCGGATGTGGGTTC 246 ||||| ||||| ||||||||| |||||| |||| | || |||||| |||||||||||| Sbjct 94 ACTGTGCCCAAAACCGACGATCCAACTTCACCGACG-GTT-ACATTTAGGATGTGGGTTC 151 Query 247 TTGGTA-TAGGCGCGTGCATTGTACTCTCCTTTATCAACCAGTTTTTCTGGTACAGAA-C 304 |||| | || |||| || || | | || ||| | |||||||||||||||||||||| | Sbjct 152 TTGGCATTA-GCGCTTGTGTTCTTTTGTCATTTCTAAACCAGTTTTTCTGGTACAGAACC 210 Query 305 GATGCCGTTGAGTATCACCGGAATCTCCGCTCAGATCGCCGTCGTGCCGC-TTGGTCATC 363 || || ||| ||| || | || |||||||| || || || || | ||||||||| Sbjct 211 AAT-CCTTTGTCCATCTCCTCTGTTTCGGCTCAGATTGCTGTTGTTCC-CATTGGTCATC 268 Query 364 TCATGGCGAGAGTGCTTCCGACAAAAAGATTCTTGGAAGGTACGAGGT-TTCAGTTT-AC 421 ||||||| ||||| ||||| |||| |||||||| ||||| ||||||| || ||| || Sbjct 269 TCATGGCTAGAGTTCTTCCCACAAGGAGATTCTTCGAAGGGACGAGGTGGTC--TTTCAC 326 Query 422 CTTAAACCCGGGTGCC-TTCAACGT--CAAGGAACATGTTCTGATAACTATCTTTGCAAA 478 | || || ||| || || | || ||| ||||||||||| |||||| | |||||||| Sbjct 327 AATGAATCCTGGT-CCGTT-TA-GTACCAAAGAACATGTTCTTATAACTGTGTTTGCAAA 383 Query 479 TTCCGGCGCCGGCTCTGTTTACGCTACTCACATACTTAGTGCTATTAAGCTTTACTACAA 538 || ||| | || ||||| ||||||| ||| || ||||||||| |||||||||| ||||| Sbjct 384 CTCAGGCTCTGGGTCTGTATACGCTAGTCATATTCTTAGTGCTGTTAAGCTTTATTACAA 443 Query 539 -ACGTTCTCTTCCTTTCCTCCCTGCATTT-CTCGTCATGATCACCACTCAGATTCTT-GG 595 | | ||| |||| | ||||| ||| ||||| ||||||||||||||| | || || Sbjct 444 GA-GAAGGCTTGATTTCTTACCTGC-TTTGCTCGTTATGATCACCACTCAG-GTATTGGG 500 Query 596 ATTTGGTTGGGCTGGTCTCT-TCAGGAAACACCTT-GTTGAGCCTGGTGAAATGTGGTGG 653 |||||||||||||||| | | | |||||||| || ||||| |||||||||||||||||| Sbjct 501 ATTTGGTTGGGCTGGTTTGTAT-AGGAAACA-TTTAGTTGATCCTGGTGAAATGTGGTGG 558 Query 654 CCAAGCAATCTTGTTCAAGTCTCTCTCTTTGGTGCGTTACACGAGAAAGAAAAGAAATCA 713 |||||||||||||||||||| |||||||| | || || ||||||||||| || |||||| Sbjct 559 CCAAGCAATCTTGTTCAAGTGTCTCTCTTCAGAGCATTGCACGAGAAAGAGAACAAATCA 618 Query 714 AGA-GGAGGCATGAGTAGAACTCAATTCTTCT-TAATCGTC-CTCGT-AGCTAGCTT-TG 768 | | || || || ||||||| ||| ||||| | | ||| | ||| | | ||||||| | Sbjct 619 AAATGG-GGAATTAGTAGAAATCAGTTCTT-TGTCATCA-CGCTCATCA-CTAGCTTCTC 674 Query 769 CTTACTA-CATCTTTCCTGGTTATCTTTTCACCATGTTAAC-ATCAATCTCATGGGTCTG 826 || | || | || | ||||||||||| ||||| | ||||| | | |||| ||| | || Sbjct 675 CT-ATTATC-TCCTACCTGGTTATCTCTTCACGGTCTTAACCACCG-TCTCTTGGTTATG 731 Query 827 TTGGCTCAATCCC-AAATCAATTCTGGTAAACCAACTCGGTTCAGG-TGAACATGGTCTT 884 |||| | | ||| ||||| ||||| |||||||| || |||||||| | | | |||||| Sbjct 732 TTGGATTAG-CCCTAAATCGATTCTAGTAAACCAGCTTGGTTCAGGGTCAGC-TGGTCTA 789 Query 885 GGCATTGGTTCCATTGGTTTTGATTGGGTCA-CTATTA-GTGCTTATCTTGGAAGCCCTT 942 || ||||||||| ||||| | || ||| ||| | || || | |||||||||||||| Sbjct 790 GGTATTGGTTCCTTTGGTCTGGACTGG-TCAACCATCGCGT-CATATCTTGGAAGCCCAC 847 Query 943 TAGCTAGTCCTTTGTTCGCTTCCGTCAA-TGTAGCCATTGGTTTCGTGCTGGTTATGTAT 1001 | ||||| || || || || || | ||| | | || |||| ||| | || || ||||| Sbjct 848 TCGCTAGCCCATTCTTTGCCTCAG-CAAATATTGCGGTTGGGTTCTTTCTTGTGATGTAC 906 Query 1002 ATCGTCACGCCTGTTTGTTACTGGCTTAACATTTATG-A-TGCCAAGACCTTCCCTATCT 1059 | |||| ||| | ||||||| || | |||| | | |||||| |||||||| |||| Sbjct 907 GTAATCACACCTCTCTGTTACTATCT-AG-ATTTCTACAATGCCAAAACCTTCCCAATCT 964 Query 1060 TCTCTAGTCAGCTCTTCATGGGGAATGGCTCACGT-TATGATGTTTTGAGCATTATTGAT 1118 ||| || | ||||| | | | ||| | | || |||| |||||| || ||| Sbjct 965 ACTCCGGTAAACTCTTTGTAGCCAGTGGGA-AGGAATACAATGTAACGAGCATCATCGAT 1023 Query 1119 AGCAAATT-CCATCTTGACCGTGTGGTTTACTCTAG-GACCGGGTCCA-TCAATATGAGC 1175 || |||| || || || ||| || |||| | || |||||| ||| || | |||||| Sbjct 1024 -GCCAATTTCCGCCTCGATCGTAAGGCTTACGC-AGAGACCGGA-CCAGTCCACATGAGC 1080 Query 1176 ACCTTCTTTGCTGTTACTTATGGTCTCGGGTTTGCTACATTGTCTGCCACCATTGTCCAT 1235 || |||||||| || |||||||| ||||| ||||| || |||||||| | ||||||||| Sbjct 1081 ACTTTCTTTGCCGTGACTTATGGACTCGGCTTTGCGACCTTGTCTGCTAGTATTGTCCAT 1140 Query 1236 GTTTTAG-TCTTCAACGG-AAGTGA-CTTGTGGAAGCAGAC-AAGAGGGGCGTTTCAGAA 1291 || | | | |||||||| || || ||| |||| || || || ||| ||||||| ||| Sbjct 1141 GTCCT-GCTTTTCAACGGCAAA-GATCTT-TGGACTCAAACCAA-AGGAGCGTTTC-GAA 1195 Query 1292 GAAT-AAGAAAATGGATATACACACGA-GAATCATGAAGAAAAACTACAGGGAAGTTCCA 1349 || ||||||||||||||||| || | || ||||||||| || |||| |||||||| Sbjct 1196 AAAACAAGAAAATGGATATACATACAAAGA-TCATGAAGAGGAATTACAAAGAAGTTCC- 1253 Query 1350 T-TGTGGTGGTTTTTGGTAATCC-TTTTA-C--TGAATATCGC-GCTTATCATGTTCATC 1403 | | ||||||||| | | || |||| | ||||| | || | |||| | ||||| Sbjct 1254 TCTCTGGTGGTTTCT--T--TCGATTTTCGCCGTGAATCTTGCAG-TTATTGTCTTCATA 1308 Query 1404 TCCGTGCACTACAACG-CTACTG-TGCAGCTTCCTTGGTGGGGAG-TGTTACTTG-CTTG 1459 | | |||| || | | || | | |||||||| |||||||||| | || |||| |||| Sbjct 1309 TGTATTTACTATAA-GAC-ACAGATTCAGCTTCCATGGTGGGGAGCT-TT-CTTGGCTTG 1364 Query 1460 TGCCATTGCCATCAGT-TTCACTCCTTT-GATCGGTGTCAT-AGCTG-CCACCACTAATC 1515 | || || ||| | ||||||||| | | | ||||| || | || |||| ||||| | Sbjct 1365 TTTGATAGCTATCT-TCTTCACTCCTCTCGTT-GGTGTGATCA--TGGCCACTACTAACC 1420 Query 1516 AGGCACCGGGAT-TGAATATCATAACAGAGTATGTTATCGGGTATATC-TACCCGGA-AC 1572 |||| ||||| | |||| || || || || || | || |||||| | || || || | Sbjct 1421 AGGCTCCGGG-TCTGAACATTATCACGGAATACATAATTGGGTATG-CATATCCAGAGA- 1477 Query 1573 GTCCTGTTGCAAACATGTGTTTCAAGGTCT-ATGGATACATTAGTATGACTCAAGCGCTA 1631 | || ||||| ||||| || |||||| || | |||||||| || ||| ||||| | | Sbjct 1478 GACCAGTTGCTAACATATGCTTCAAGA-CTTACGGATACATCAGCATGTCTCAATCTTTG 1536 Query 1632 ACTTTCATTTCCGACTTCAAGCTTGGT-CATTACATGAAGATCCCGCCTAGATCCATGTT 1690 |||||| | || || || |||||||| | ||||||||||||||| || ||| ||||||| Sbjct 1537 ACTTTCCTCTCTGATTTGAAGCTTGGAAC-TTACATGAAGATCCCACCAAGAACCATGTT 1595 Query 1691 CATGGCTCAGGTGGCTGGGACACTT--GTGGCGGTGGTTGTGTACACAGGAACAGCCTGG 1748 ||||| ||||| | |||| ||||| || || || | || ||| || ||||| ||| Sbjct 1596 TATGGCACAGGTTG-TGGG-CACTTTAGTAGCAGTCATCGTTTACGCAATCACAGCTTGG 1653 Query 1749 TGGTTAATGGAAGAGATTCCTCATCTTTGTGATACATC-CTTGCTTCCTTCAG-ACAGCC 1806 ||| |||||| || || || |||| |||||||| || || |||||| ||| | || | Sbjct 1654 TGGCTAATGGCTGAAATCCCAAATCTCTGTGATACTTCTCT-GCTTCCACCAGGA-AGTC 1711 Query 1807 AATGGACTTGTCCCAT-GGACCGCGTTTTCTTTGACGCCTCTGTGATTTGGGGACTAGTG 1865 | ||||||||||| || ||| || || ||||| ||||| || ||||| |||||||| || Sbjct 1712 AGTGGACTTGTCC-ATCGGATCGAGTCTTCTTCGACGCATCAGTGATCTGGGGACTTGTA 1770 Query 1866 GGACCACGCAGGGTGTTTGGAGACCTTGGAGAATACTCAAATGTCAACTGGTTCTTCCTC 1925 |||||| | || ||||||| || ||||||||||||||||| | |||||||||||| | Sbjct 1771 GGACCAAGAAGAATGTTTGGTGATCTTGGAGAATACTCAAACATAAACTGGTTCTTCGTA 1830 Query 1926 GTTGGAGCCATAGCTCCA-CTCTTAGTTTGGCT-AGCCACAAAGA-TGTTTCCGGCTCA- 1981 | || || ||||||||| | || || | || |||||||| || | || || || Sbjct 1831 GGAGGTGCAATAGCTCCAGCA-TTGGTCTA-CTTAGCCACAA-GACTCTTCCCAAA-CAA 1886 Query 1982 GACATGGATCGCCAAGATTCATATCCCTGTCCTTGTGGGAGCCACCGCAATGATGCCACC 2041 || ||||||| | || ||||| |||||||| || || |||||||| || || |||||||| Sbjct 1887 GAAATGGATCTCAAACATTCACATCCCTGTTCTGGTTGGAGCCACAGCTATAATGCCACC 1946 Query 2042 AGCAACAGCAGTTAACTTCACTAGTTGGCTCATCGTCGCATTCATCTTTGGCCACTTCAT 2101 ||| | || ||||||||||| || |||||| | | || || | ||||| || ||| | Sbjct 1947 AGCTTCTGCGGTTAACTTCACGAGCTGGCTCGTTATGGCGTTTGTGTTTGGACATTTCGT 2006 Query 2102 CTTCAAGTACAGAAGAGTGTGGTGGACCA-AG-TATAACTATGTGT-TGTCTGGTGGTTT 2158 |||||||||||||||| |||||| | | || ||||||||||| | ||||||| || | Sbjct 2007 GTTCAAGTACAGAAGAGAATGGTGG-C-AGAGATATAACTATGT-TCTGTCTGGAGGAAT 2063 Query 2159 AGATGCTGGCTCTGCTTTTATGACCATACTTCTGTTTCT-AGCACTCGGA-CGAAAAG-G 2215 ||||| || ||| || ||| | | ||| ||||||| | | || | | || | | | Sbjct 2064 GGATGCAGGAACTGGATTCATGTCTGTGCTTTTGTTTCTTA-CGCT-GCAACGTAGTGAG 2121 Query 2216 AATTGA-AGTGCAGTGGTGGGGAAATTCCGGCGACCGAGATACATGTCCC-TTAGCTTCT 2273 | ||| | || | |||||||||||||| || || | | | ||| | || ||| Sbjct 2122 A-TTGCTATTG-ATTGGTGGGGAAATTCTGGTGAA-G-G-T---TGTGCTGTT-GCTAAA 2172 Query 2274 TGTCCAACTGCTAAAGGTGTTGTCGT-CAAAGGCTGTCCCGTCTTCTA 2320 ||||||||||||||||||||||| || || || ||||| || ||||| Sbjct 2173 TGTCCAACTGCTAAAGGTGTTGTTGTTCAT-GGTTGTCCTGTTTTCTA 2219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95682695440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5