BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27800.1 Length=1418 Score E Sequences producing significant alignments: (Bits) Value Ahg492004 jgi|Araly1|492004|fgenesh2_kg.7__1437__AT4G27800.1 2126 0.0 > Ahg492004 jgi|Araly1|492004|fgenesh2_kg.7__1437__AT4G27800.1 Length=1393 Score = 2126 bits (1151), Expect = 0.0 Identities = 1329/1413 (94%), Gaps = 20/1413 (1%) Strand=Plus/Plus Query 6 tttttttACGAAAATCCACGGCCACTAACCGTAAAGGACACTCTTTTGATTTTTCTCTTC 65 |||||||||||||||||||||||||||||||| | | | | ||||||||||| Sbjct 1 TTTTTTTACGAAAATCCACGGCCACTAACCGT--A--A-A-------G-TTTTTCTCTTC 47 Query 66 TTCTACTTAACTCGCTTTGCCTGACTCACTGAGTCATGGCGCTTCTGAGGCCGCATCTTC 125 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 TTCTACTTAAATCGCTTTGCCTGACTCACTGAGTCATGGCGCTTCTGAGGCCGCATCTTC 107 Query 126 ATCGCTTTCACTCCAACACTCTCCGCCACTCAGCCTATCCTTCCGCCGACGCTGGCGGTG 185 ||||||||||||||||||||||||| |||| | || ||||||||||||| ||||||||| Sbjct 108 ATCGCTTTCACTCCAACACTCTCCGTTACTCCGGCTCTCCTTCCGCCGACTCTGGCGGTG 167 Query 186 GCCTTGTCGTCTATCCCACGTATGGTCGTCACCGTTGCTCCGCGATTGCGATCGACGCTC 245 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | Sbjct 168 GCCTTGTCGTCTATCCCACGTATGGTGGTCACCGTTGCACCGCGATTGCGATCGACGCGC 227 Query 246 CGTCGTCTCTGACTGGCGTGACGCCGATTCGTTGGGGTTACACGAGTGTTCAAGGATTCC 305 |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 228 CGTCGTCTCTCACTGGCGTGACGCCGATTCGATGGGGTTACACGAGCGTTCAAGGATTCC 287 Query 306 GAGATGAGATGGAAGACGACATCGTAATCCGTTCTGATGCTGTCGATAGCTTCTCCTACG 365 ||||||||||||| ||||||||||| |||||||| |||||| | |||||||||||||||| Sbjct 288 GAGATGAGATGGAGGACGACATCGTTATCCGTTCCGATGCTCTTGATAGCTTCTCCTACG 347 Query 366 CAGCGGTCTTCGACGGCCACGCTGGGTCGTCCTCTGTCAAATTCCTCAGGGAAGAGCTGT 425 | ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 348 CCGCGGTTTTCGACGGCCACGCTGGATCGTCGTCTGTCAAATTCCTCAGGGAAGAGCTGT 407 Query 426 ATAAAGAGTGTGTTGGTGCATTGCAAGCTGGATCGTTGTTGAATGGAGGCGATTTCGCAG 485 |||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 408 ATAAGGAGTGTGTTGGGGCATTGCAAGCTGGATCGTTGTTGAAAGGAGGTGATTTCGCAG 467 Query 486 CAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTTGACCGCAATTTGCTCAAATGGC 545 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct 468 CAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTGGATCGTAATTTGCTCAAATGGC 527 Query 546 TAGAAGCTAACGGTGACGAAGAAGATGAATCAGGTTCAACAGCCACTGTAATGATCATCA 605 ||||||| || |||| ||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 528 TAGAAGCAAATGGTGGCGAAGAAGACGAATCAGGTTCAACAGCCACTGTAATGTTCATCA 587 Query 606 GAAATGATGTTTCCTTCATTGCTCATATTGGTGATTCGTGTGCAGTCTTATCTCGATCTG 665 ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 588 GAAATGATGTTTCTTTCATTGCGCATATTGGAGATTCGTGTGCAGTCTTATCTCGGTCTG 647 Query 666 GGCAAATCGAGGAATTGACTGATTATCACCGTCCATATGGAAGCAGTAGAGCAGCTATTC 725 | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 648 GACAAATCGAGGAATTGACTGATTCTCACCGTCCATATGGAAGCAGTAAAGCAGCTATTC 707 Query 726 AGGAAGTGAAAAGGGTCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAG 785 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 AGGAAGTGAAAAGGATCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAG 767 Query 786 ACATAGCTGTATCTCGTGCTTTTGGTGACATCCGGTTTAAGACAAAGAAGAATGATATGT 845 ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||| Sbjct 768 ACATAGCTGTATCCCGTGCTTTTGGTGACATCCGGTTCAAGACAAAGAAGGATGAAATGT 827 Query 846 TAAAGAAGGGTGTTGATGAAGGAAGATGGTCCGAGAAGTTTGTTTCCAGAATCGAGTTTA 905 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 828 TAAAGAAGGGTGTTGATGAAGGAAGATGGACCGAGAAGTTTGTTTCGAGAATCGAGTTTA 887 Query 906 AAGGGGACATGGTTGTGGCGACTCCAGATATCTTCCAAGTACCTCTGACATCTGATGTGG 965 ||||||||||||| || || |||||||||||||||||||||||||| || |||||||||| Sbjct 888 AAGGGGACATGGTAGTCGCAACTCCAGATATCTTCCAAGTACCTCTTACTTCTGATGTGG 947 Query 966 AATTCATTATTTTAGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTA 1025 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 AATTCATTATTTTGGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTA 1007 Query 1026 GTTATGTTAGGGATCAGCTCCGGAAACATGGGAATGTGCAGCTTGCTTGTGAATCTCTTG 1085 ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||| Sbjct 1008 GTTATGTTAGGGATCAGCTTCGGAAACAT-GGAA-----ATCTTGCTTGTGAATCTCTTG 1061 Query 1086 CGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATTAGCATCATTATTGCTGATCTAG 1145 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1062 CGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATCAGCATCATTATTGCTGATCTAG 1121 Query 1146 GAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTC 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 GAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTC 1181 Query 1206 AGGCTGCAACGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTT 1265 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 AGGCTGCAGCGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTT 1241 Query 1266 AAGTGAATTGAACATTCTATCTCTTTCGTTAGTGTATATAAAACCTGTAACTATGTCTAA 1325 ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| Sbjct 1242 AAGTGAATTGAACATTCGATCTCTTTCTTTAGTGTATATAAAACATGTAACTATGTCTAA 1301 Query 1326 CACTCTAGTCTTCCCATAGAAATGGAGATATGAAGATACCTCACAAACAGAACCAGCTTT 1385 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1302 CACTCTAGTATTCCCATAGAAATGGAGATATGAAGATACCTCACAAACAAAACCAGCTTT 1361 Query 1386 ATATTATTATATATCCCACTTTCACAAGCGTTG 1418 ||||||||||||| || |||||||||||||||| Sbjct 1362 ATATTATTATATAACC-ACTTTCACAAGCGTTG 1393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53021621040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5