BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27860.1 Length=2133 Score E Sequences producing significant alignments: (Bits) Value Ahg354010 jgi|Araly1|354010|fgenesh1_pg.C_scaffold_7001183 1201 0.0 > Ahg354010 jgi|Araly1|354010|fgenesh1_pg.C_scaffold_7001183 Length=1749 Score = 1201 bits (650), Expect = 0.0 Identities = 768/826 (93%), Gaps = 4/826 (0%) Strand=Plus/Plus Query 1024 AAACTCAAAATCACGATAAAGAAGCTGCAGATCCTGACCAAGATGTAGACAAGGAAACAG 1083 ||||||||||| ||||| | ||| |||| ||||||| |||||| | |||||| |||||| Sbjct 926 AAACTCAAAATAACGATGACCAAGATGCAAATCCTGATCAAGATTTTGACAAGAAAACAG 985 Query 1084 AGAACCAAAA-AAGTCACCTAACTCCGATATATCCTTCACCACTGGAGCAACCTTCCAAG 1142 | |||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 986 ACAACCAAAACAA-TCACCTAACTCCGATATATCCATCAACACTGGAGCAACCTTCCAAG 1044 Query 1143 CAAATTATCAATAAGGAAACTCAAACAGAACCTATGTTGCCACCTAATGCTCAATCAGAG 1202 ||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| Sbjct 1045 AAAATTATCAATAAGGAAACTCAAGCAGAACCTGTATTGCCACCTAATGCTCAACCAGAG 1104 Query 1203 ATCCCAAATAGTGTTGAACCACGCAAAGGCGGTAATAAAGTAGAAATTCTGAAAAGTATT 1262 |||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||| Sbjct 1105 ATCCCAAATAGTGTTGAACCACGCAAAGACGGTAATAAACTCGAAATCCTGAAAAGTATT 1164 Query 1263 GTGTATGGAGGTCTTACAGAATCCATCACAAGCCTATGCACGGTAACATCTGCGGCAGCT 1322 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 1165 GTGTATGGAGGTCTTACAGAATCCATCACAAGCCTTTGCACCGTAACATCTGCGGCGGCG 1224 Query 1323 TCTGGTGCTTCAACTCTGAACGTTTTAGCCTTGGGAGTTGCCAATTTGTCAAGCGGTCTT 1382 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 ACTGGTGCTTCAACTCTGAACGTTTTAGCCTTGGGAGTTGCCAATTTGTCAAGCGGTCTT 1284 Query 1383 CTTCTGACTGTTCACAGCCTCCAAGAACTAATAAACGAGAAACCCAGAAAACAAACCAAC 1442 |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1285 CTTCTGACCGTTCACAGTCTCCAAGAACTAATAAACGAGAAACCCAGAAGACAAACAAAC 1344 Query 1443 ACTGATGATTCTCCagaagaaggagaaggagaagaagatcgatacgaggaagtactcggg 1502 |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1345 ACTGATGATTCTCCAGGAGAAGTAGAAGGAGAAGAAGATCGATACGAGGAAGTTCTCGGA 1404 Query 1503 agaagagagTATTCGAGGATTCACAGAGTGATCGCAATCTCTTCTTTCGTCATCTTCGGA 1562 |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 1405 AGAAGAGAGTATTCGAGGCTTCACAGATTGATCGCAATCTCTTCTTTCGTCGTCTTCGGC 1464 Query 1563 TTGATCCCACCTTTAGTATACGGTTTCTCGTTTCGAAAAAAGAT-GGAAAAGAGACAAGA 1621 |||||||||||||| |||||||| ||||||||||||| || ||| ||| ||||||||||| Sbjct 1465 TTGATCCCACCTTTGGTATACGGCTTCTCGTTTCGAAGAA-GATTGGAGAAGAGACAAGA 1523 Query 1622 GTACAAGGTTTTAGCTGTTTACGCAGTGTCTCTACTCTGCATCGTCTTGCTCTCAATAGC 1681 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || Sbjct 1524 GTACAAGGTTTTAGCAGTTTACGCAGTGTCTCTACTCTGCGTCGTCTTGCTCTCAATTGC 1583 Query 1682 GAAAGCTTACGTGTCGAAGAAACGCGATTATGTCAAGACTCTGTTTCGGTACACGACGAC 1741 |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1584 GAAAGCTTACGTCTCGAAGAAACGGGATTATGTCAAGACTCTGTTTCGGTACACGACGAT 1643 Query 1742 GGCGACGACGGCGTCGGGATTCTCTCAATTTGTGGGATACTTGGTGAGTCAATGGCTTGA 1801 |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1644 GGCGACGACGGCATCGGGATTCTCTCAATTTGTGGGATACTTGGTCAGTCAGTGGCTTGA 1703 Query 1802 GAAAAGCGGGTTTTATGATGATTCTCCAGAAACTCAACGAGTTTGA 1847 |||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1704 GAAAAGCGGGCTTTATGATGATTCTTCAGAAACTCAACGAGTTTGA 1749 Score = 1103 bits (597), Expect = 0.0 Identities = 926/1075 (86%), Gaps = 62/1075 (6%) Strand=Plus/Plus Query 12 ATGGATCCCACCATGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGCACA 71 ||||| || |||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGGAACCTACCACGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGTACC 60 Query 72 GATGAATTGACCAACCTTCCCCCGGAGGACTCGCCACTCGACAGCGAGAAGGATGATAGC 131 ||||||||||||||||| |||||||| | |||||||| | |||| || |||| ||| || Sbjct 61 GATGAATTGACCAACCTGCCCCCGGA--A-TCGCCACTAGGCAGCCAGGAGGACGATGGC 117 Query 132 GTTGACTTCAGCCAGGAGCAAGGATCGGAGTCAAATGAAGCTATTGACACTGAGAATGGT 191 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GTTGACTTCAGCCACGAACAAGGATCGGAGTCAAATGAAGCTATTGACACTGAGAATGGT 177 Query 192 TCAAGATCCGTAGACAAGAACCAATACTCTGAAACTGAAGTTGTAGTTAGAGCAAAAGAT 251 ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 178 TCAAGATCCATAGACAAGAACCAATGCTCTGAAACTGAAGATGTAGTTAGAGCAAAAGAT 237 Query 252 TTACAGACAGAACCTGATTCACTGGATGATGATGTGGAGATTGTGATCAAAAACCAACAT 311 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 238 TTACAGACAGAACCTGATTCACTGGATGATGATGTGGAGATTGTAATCAAGAACCAACAT 297 Query 312 AAGTATTACATATACTGCCCTTGCTGTGGTGAAGATATCACCAAAACAGTCAAGCTCGTG 371 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AAGTATTACTTTTACTGCCCTTGCTGTGGTGAAGATATCACCAAAACAGTCAAGCTCGTA 357 Query 372 AAGATATCAGATCCCAAACACACAAAAGACCATGACAA--AGC-T-G---T--TGACAGT 422 ||||| ||||||||| ||| ||||||||||||||||| || | | | ||||||| Sbjct 358 AAGATGTCAGATCCCCAACCCACAAAAGACCATGACACTGAGAATAGAGCTAATGACAGT 417 Query 423 GACACTGAGAATGGTTCAAAATCCAAAGACAAGAACACAAAGGTTCCATCATGGTTCTCT 482 |||| |||||||||||||| ||||| || ||| || |||||||||||||||||||| ||| Sbjct 418 GACATTGAGAATGGTTCAAGATCCATAGGCAAAAAAACAAAGGTTCCATCATGGTT-TCT 476 Query 483 -GATTTTAT-TCAGCCGCTGTTTTCTTCTGA--A-GA-CAGAGGAAAGA--AAGG-G-GT 532 |||||| | |||||||||| ||||||||| | | | | ||||| |||| | | Sbjct 477 TGATTTT-TGTCAGCCGCTGGTTTCTTCTGTTTATGGTCCTAACAAAGACCAAGGCGAGA 535 Query 533 T-G---TTGATTCAGAGTTACTAGGAACTTACGAAGATCTCGGTATCATTGGTGAGGAAC 588 | |||||||| |||||| || ||||| ||| || || | ||||| |||||| |||| Sbjct 536 AAGGGGTTGATTCAAAGTTACCAGAAACTTCCGATGACCTTGATATCAATGGTGAAGAAC 595 Query 589 CGAGCATAGATGTCAGTAACGAGAAAGACAGACCGAGTTTTCCAAAGTGGTACCTCGATG 648 | ||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||| Sbjct 596 CAAGCATTGATGTCAGTAATGAGAAAGGCGGACCGAGTTTTCCAAAGTGGTACCTCGATG 655 Query 649 TTTTTGCTTGGTTATTCCTCTGTATTATTATTGCTCTTTCTGTCCTTTCGACTTCTCCAC 708 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 656 TTTTTGCTTGGTTGTTCCTCTGTATTATTATTGCTCTCTCTGTCCTTTCGACTTCTCCAC 715 Query 709 CGCCTTTCATTCAACCACATCTGCAATTACCATCTATGCCTACATTGAGGATGCCTTCTG 768 |||||||||||||||| ||||||||||| || ||||||||| ||||| || ||||||| | Sbjct 716 CGCCTTTCATTCAACCGCATCTGCAATTGCCTTCTATGCCTTCATTGCGGCTGCCTTCCG 775 Query 769 CTTCTGTACTTTTGTTACTTCCCACATCTGCGGTGTTGCTTCTCTTCATTATTTCAATGA 828 ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 776 CTTCTATACTTTTGTTACTTCCCACGTTTGCGGTGTTGCTTCTCTTCATTATTTCAATGA 835 Query 829 GGTCCCGTTTCACTCCGAGATATCACAAGGAGAAAGGCGA-----GG-TCG-TTCCCAAG 881 |||||||||||| ||| ||||||||| ||||||||||||| || ||| |||| ||| Sbjct 836 GGTCCCGTTTCAGTCCAAGATATCACGAGGAGAAAGGCGAAAATAGGGTCGATTCC-AAG 894 Query 882 TCTACTGATTCCA--AGT------C----------TCA------CGATGACCAAGCTGCA 917 |||||| || ||| ||| | ||| ||||||||||| |||| Sbjct 895 TCTACTAATACCACTAGTGAAGAACCAGCAAAAACTCAAAATAACGATGACCAAGATGCA 954 Query 918 AATACTGATCAAGATTTTGACAAGAAAACAGACAAC-AAAAGAAATCGCCTAACTCCTAT 976 ||| |||||||||||||||||||||||||||||||| |||| || || ||||||||| || Sbjct 955 AATCCTGATCAAGATTTTGACAAGAAAACAGACAACCAAAACAA-TCACCTAACTCCGAT 1013 Query 977 ATACCCTTCATCACTAGAGAAACCTTCCAAGCAAACTGTCAATAAGGAAACTCAA 1031 ||| || ||| |||| ||| ||||||||||| ||| | ||||||||||||||||| Sbjct 1014 ATATCCATCAACACTGGAGCAACCTTCCAAGAAAATTATCAATAAGGAAACTCAA 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80256146215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5