BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27910.1
Length=3302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945247 jgi|Araly1|945247|scaffold_701476.1 4953 0.0
Ahg949934 jgi|Araly1|949934|scaffold_801821.1 2652 0.0
> Ahg945247 jgi|Araly1|945247|scaffold_701476.1
Length=3121
Score = 4953 bits (2682), Expect = 0.0
Identities = 2973/3108 (96%), Gaps = 41/3108 (1%)
Strand=Plus/Plus
Query 1 ATGATTATCAAACGGAAATTTAAAACCCAGATACCGAGTTTGGAACGGTGCAAACTC-GG 59
||||| ||||||||||||||||||||||||||||||||||| |||| | |||| ||
Sbjct 22 ATGATAATCAAACGGAAATTTAAAACCCAGATACCGAGTTT-GAAC----C--ACTCGGG 74
Query 60 TAATGAGTCAAGGAAGAAGAAGAGAAAGTTGAACTTGGGAGGAGGTGGTTACTACTATCC 119
|||||||| | | | ||||||||||||| |||||| | |||||| | | ||||||||
Sbjct 75 CAATGAGTCCA-G-A-AAGAAGAGAAAGTCGAACTT--G-GGAGGTTG-T--TACTATCC 125
Query 120 TCTCAATCTTCTCGGAGAAATCGCCGCCGGGATTGTTCCAGGTAATGGACGCAATGGATT 179
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 126 TCTCAATCTTCTCGGAGAAATCGCCGCCGGGATTGTTCCAGGAAATGGACGGAATGGATT 185
Query 180 CTCTGCTTCCTGGTGCACTGAAG-----T-TAC---AAAACCTGTTGAGGTGGAAGAG-T 229
||||||||||||||||| ||||| | | | |||||||||||||| |||||| |
Sbjct 186 CTCTGCTTCCTGGTGCAATGAAGTTTCCTGTTCGGTGAAACCTGTTGAGGTTGAAGAGTT 245
Query 230 CATTGTCTAAGAGAAGATCTGATTCCGGTACTGTTAGAGATTCTCCTCCGGCGGAAGTCT 289
||| |||||||||||||| |||||||| ||| || ||| |||||||||| |||||||
Sbjct 246 GATT-TCTAAGAGAAGATCCGATTCCGGCGTTGTGAGGGATCCTCCTCCGGCTGAAGTCT 304
Query 290 CACGTCCACCGCTTGTTCGGACATCTAGGGGAAGAATTCAGGTGCTTCCTTCTCGATTCA 349
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 305 CACGCCCACCGCTTGTTCGGACATCTAGGGGACGAATTCAGGTGCTTCCTTCTCGATTCA 364
Query 350 ATGATTCGGTGCTTGATAATTGGAGGAAGGATAGTAAAAGTGATTGTGATTTGGAGGAAG 409
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| | |
Sbjct 365 ATGATTCGGTGCTCGATAATTGGAGGAAAGATAGCAAAAGTGATTGTGATTTGGA-G--G 421
Query 410 AAGAAATAGAATGCAGGAATGAGAAAGTTGTTAGTTTTCGGGTTCCTAAAGCTACTAATT 469
||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 422 AAGAAATAGAATGCAGGGATGATAAAGTTGTTAGTTTTCGGGTTCCTAAAGCTAGTAATT 481
Query 470 TGAAAAGCAAGGAACTTGATAGGAAGAGTAAGTATAGTGCATTGTGTAAAGAAGAAAGGT 529
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 482 TGAAAAGCAAGGAACTTGATAGGAACAGTAAGTATAGTGCATTGTGTAAAGAAGCAAGGT 541
Query 530 TTCACGAGCAACATAATGATGAGGCTCGTGCTCGTGTTGATGAGAAGCTTCCGAATAAA- 588
|||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 542 TTCACGAGCAACGT-A--ATGAGGCTCGTGCTCGTGTTGATGAGAAGCTTCCAAATAAAC 598
Query 589 AAGGGTACTTTTGGGCCAGAGAACTTCTATTCAGGTGACTTGGTTTGGGCAAAGTCTGGG 648
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AA-GGTACTTTTGGGCCTGAGAACTTCTATTCAGGTGACTTGGTTTGGGCAAAGTCTGGG 657
Query 649 AGAAATGAGCCGTTTTGGCCGGCTATTGTTATCGATCCAATGACACAAGCACCCGAGCTT 708
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAAATGAGCCGTTTTGGCCTGCCATTGTTATCGATCCAATGACACAAGCACCCGAGCTT 717
Query 709 GTTTTGCGTTCTTGTATACCCGATGCAGCCTGTGTTGTGTTCTTTGGTCACTCTGGGAAC 768
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GTTTTGCGTTCTTGTATACCCGATGCTGCCTGTGTTGTGTTCTTTGGTCACTCTGGGAAC 777
Query 769 GAGAATGAAAGGGACTATGCATGGGTGAGGAGAGGGATGATCTTCCCTTTTGTGGACTAT 828
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 GAGAATGAAAGGGACTACGCATGGGTGAGGAGAGGGATGATCTTCCCTTTTGTGGATTAT 837
Query 829 GTTGCCAGGTTCCAGGAACAGCCTGAACTGCAAGGGTGCAAGCCTGGGAATTTTCAGATG 888
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 838 GTTGCCAGGTTCCAGGAACAGTCTGAACTGCAAGGTTGCAAGCCTGGGAATTTTCAGATG 897
Query 889 GCATTGGAGGAAGCATTTTTGGCAGATCAGGGATTCACGGAGAAGTTGATGCATGATATT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCATTGGAGGAAGCATTTTTGGCAGATCAGGGATTCACGGAGAAGTTGATGCATGATATT 957
Query 949 CACTTGGCTGCTGGGAACTCGACTTTTGACGATTCTTTCTACAGATGGATTCAAGAAACT 1008
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CACTTGGCTGCTGGTAACCCGACTTTTGACGATTCTTTCTACAGATGGATTCAAGAAACT 1017
Query 1009 GCGGTCTCAAATCAGGAGCTCAATAACAATGCTCCAAGACAGGGGCTGTTAAAGAAACAC 1068
||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 GCGGTCTCAAAGCAGGATCTCAATAACAATGCTCCAACCCAGGGGCTGTTAAAGAAACAC 1077
Query 1069 AGAAATCCACTAGCATGTGCAGGATGTGAAACAGTCATTTCTTTTGAGATGGCaaaaaaa 1128
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 AGAAATCCACTAGCATGTGCAGGATGTGAAACGGTCATTTCTTTTGAGATGGCAAAAAAA 1137
Query 1129 aTGAAAGATCTGATTCCTGGAGATCAATTGTTGTGTAAACCATGTTCAAGGTTAACAAAA 1188
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 ATGAAAGCTCTGATTCCTGGAGATCAGTTGTTGTGTAAACCATGTTCAAGGTTAACAAAA 1197
Query 1189 TCAAAACACATTTGTGGTATATGCAAGAAGATAAGGAATCATTTGGACAATAAAAGCTGG 1248
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1198 TCAAAACACATTTGTGGTATATGCAAGAAGATAAGGAATCATTTGGACAGTCAAAGCTGG 1257
Query 1249 GTGCGCTGTGATGGTTGTAAAGTCCGGATACACGCAGAATGTGACCAAATATCAGATAGG 1308
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 1258 GTGCGCTGTGATGGTTGTAAAGTCTGGATACACGCAGAGTGTGACCAAATATCAGATAAG 1317
Query 1309 CATTTGAAGGATTTGCGGGAAACAGATTACTACTGTCCTACTTGCAGAGCAAAATTTAAC 1368
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1318 CATTTGAAGGATTTGGGGGAAACAGATTACTACTGTCCTACTTGCAGAGCTAAATTTAAC 1377
Query 1369 TTTGACCTATCAGATTCAGAAAAACAAAACTCAAAGTCAAAAGTT-GCGAAAGGCGATGG 1427
|||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct 1378 TTTGACCTATCAGATTCAGAAAAACAAAACACAAAGTCAAAACTTGGC-AAAGGCGATGG 1436
Query 1428 TCAGATGGTTCTTCCTGACAAGGTTATTGTTGTATGCGCTGGAGTAGAAGGAGTTTATTT 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCAGATGGTTCTTCCTGACAAGGTTATTGTTGTATGCGCTGGAGTAGAAGGAGTTTATTT 1496
Query 1488 CCCGAGGCTCCATTTAGTGGTATGTAAATGTGGCTCCTGTGGACCTAAAAAGAAAGCCCT 1547
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1497 TCCGAGGCTCCATTTAGTGGTATGTAAGTGTGGCTCCTGTGGACCCAAAAAGAAAGCCCT 1556
Query 1548 TAGCGAATGGGAAAGGCATACCGGATCAAAGTCAAAAAATTGGAAGACCAGTGTGAAAGT 1607
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TAGCGAATGGGAAAGACATACCGGATCAAAGTCAAAAAATTGGAAGACCAGTGTGAAAGT 1616
Query 1608 CAAAAGCTCGAAGCTGGCACTAGAAGATTGGATGATGAACTTAGCAGAGTTACATGCAAA 1667
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 CAAAAGCTCTAAGCTGGCACTAGAAGATTGGATGATGAAATTAGCAGAGTTACATGCAAA 1676
Query 1668 TGCTACTGCAGCTAAAGTTCCTAAACGACCTTCCATAAAGCAGAGAAAGCAGAGATTGCT 1727
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TGCTACTGCAGCTAAAGTGCCTAAACGACCTTCCATAAAGCAGAGAAAGCAGAGATTGCT 1736
Query 1728 TGCTTTTCTATCAGAGACATATGAGCCGGTCAATGCGAAGTGGACAACAGAACGATGTGC 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TGCTTTTCTATCAGAGACATATGAGCCGGTCAATGCGAAGTGGACAACAGAACGATGTGC 1796
Query 1788 AGTTTGCAGATGGGTTGAAGATTGGGACTACAACAAGATTATTATCTGCAACAGATGCCA 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 AGTTTGCAGATGGGTTGAAGATTGGGACTACAACAAGATTATTATCTGCAACAGATGCCA 1856
Query 1848 AATAGCAGTGCATCAGGAATGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGT 1907
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1857 AATAGCAGTGCATCAGGAATGCTATGACGCTAGACATGTGCGTGATTTCACCTCATGGGT 1916
Query 1908 CTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGG 1967
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1917 CTGTAAAGCATGTGAGAGACCAGATATTAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGG 1976
Query 1968 AGGTGCATTGAAGCCAACTGATGTGGAAACGTTGTGGGTTCATGTGACATGTGCTTGGTT 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 AGGTGCATTGAAGCCAACTGATGTGGAAACGTTGTGGGTTCATGTGACATGTGCTTGGTT 2036
Query 2028 TCAGCCTGAAGTATGTTTTGCAAGTGAGGAAAAAATGGAACCTGCAGTTGGGATTTTGAG 2087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 TCAGCCTGAAGTATGTTTTGCAAGTGAGGAAAAAATGGAACCTGCAGTTGGGATTTTGAG 2096
Query 2088 TATTCCATCAACTAATTTTGTGAAGATATGTGTAATATGCAAACAAATACATGGCTCGTG 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TATTCCATCAACTAATTTTGTGAAGATATGTGTAATATGCAAACAAATACATGGCTCGTG 2156
Query 2148 TACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTA 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 TACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTA 2216
Query 2208 TAGAATGGAGTTGCACTGCTTGGAGAAAAATGGTCAGCAGATAACAAAGATGGTGTCCTA 2267
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2217 TAGAATGGAGTTGCACTGCTTGGAGAAAAATGGTCAGCAGATTACAAAGATGGTGTCCTA 2276
Query 2268 TTGTGCTTATCACAGGGCTCCCAACCCAGATAACGTGTTAATTATACAAACTCCTTCAGG 2327
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2277 TTGTGCTTATCATAGGGCTCCAAACCCAGATAACGTGTTAATTATACAAACTCCTTCAGG 2336
Query 2328 AGCCTTCTCTGCAAAGAGTCTTGTCCAAAACAAGAAGAAAGGTGGTTCCAGGCTTATTTC 2387
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 GGCATTCTCTGCAAAGAGTCTTGTCCAAAACAAGAAGAAAGGTGGTTCCAGGCTTATTTC 2396
Query 2388 ATTAATCAGAGAAGACGATGAAG---CACCTGCAGAGAATACCATTACATGTGATCCATT 2444
|| ||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 2397 ATCAATTAGAGAAGACAATGAAGAGTCACCTGCAGAGGATACCATTACACGTGATCCATT 2456
Query 2445 TTCTGCTGCTCGTTGTCGAGTATTTAAAAGAAAGATCAATAGCAAGAAGAGGATTGAAGA 2504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 TTCTGCTGCTCGTTGTCGAGTATTTAAAAGAAAGATCAATAGCAAGAAGAGGATTGAAGA 2516
Query 2505 AGAAGCCATTCCTCACCACACAAGGGGACCACGCCATCATGCATCAGCAGCAATCCAAAC 2564
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2517 AGAAGCCATTCCTCACCACACAAGGGGACCACGCCATCATCCATCAGCAGCAATCCAAAC 2576
Query 2565 TTTAAACACATTCAGACATGTGCCAGAAGAACCCAAATCGTTTTCTTCTTTCAGGGAACG 2624
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2577 TCTAAACACATTCAGACATGTGCCGGAAGAACCAAAATCGTTTTCTTCTTTCAGGGAACG 2636
Query 2625 ACTTCACCACTTGCAGAGGACAGAAATGGATCGGGTCTGCTTTGGGCGATCTGGAATTCA 2684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2637 ACTTCACCACTTGCAGAGGACAGAAATGGATCGGGTCTGCTTTGGGCGATCTGGAATACA 2696
Query 2685 TGGATGGGGTCTTTTTGCAAGAAGAAATATCCAAGAAGGAGAAATGGTTCTTGAATACAG 2744
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 TGGATGGGGTCTTTTCGCAAGAAGAAATATCCAAGAAGGAGAAATGGTTCTTGAATACAG 2756
Query 2745 AGGGGAACAGGTGAGAGGTAGCATTGCAGACTTGAGAGAAGCACGTTATCGCAGAGTAGG 2804
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2757 AGGGGAACAGGTGAGAGGCAGCATTGCAGACTTGAGAGAAGCACGGTATCGCAGAGTAGG 2816
Query 2805 AAAGGATTGCTATCTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGG 2864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2817 GAAGGATTGCTATCTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGG 2876
Query 2865 GAATATAGCTCGGCTCATCAATCATTCGTGTACACCAAACTGCTATGCGAGGATTATGAG 2924
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 2877 GAATATAGCTCGGCTCATCAACCATTCGTGTACGCCAAATTGCTATGCGAGGATTATGAG 2936
Query 2925 TGTAGGAGATGAGGAAAGCAGGATTGTCCTGATAGCCAAGGCCAATGTAGCTGTGGGAGA 2984
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2937 TGTGGGAGATGAGGAAAGCAGGATTGTCCTGATAGCCAAGGCCAATGTAGCTGTGGGAGA 2996
Query 2985 GGAGTTAACGTATGATTACTTATTTGATCCAGACGAGGCAGAGGAACTCAAGGTGCCATG 3044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2997 GGAGTTAACGTATGATTACTTATTTGATCCAGACGAGGCAGAGGAACTCAAGGTGCCATG 3056
Query 3045 CTTATGTAAAGCCCCTAACTGCAGGAAATTCATGAATTAGAATAGAAA 3092
| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3057 CCTATGTAAAGCCCCCAACTGCAGGAAATTCATGAATTAGAATAGAAA 3104
> Ahg949934 jgi|Araly1|949934|scaffold_801821.1
Length=3194
Score = 2652 bits (1436), Expect = 0.0
Identities = 2185/2542 (86%), Gaps = 70/2542 (3%)
Strand=Plus/Plus
Query 579 TCCGAATAAAAAGGGTACTTT-TGGGCCAGAGAACTTCTATTCAGGTGACTTGGTTT-GG 636
||| || ||| ||||| ||| |||||||||| | || ||||| ||||| ||||||| ||
Sbjct 667 TCCTAAGAAAGAGGGT-GTTTATGGGCCAGAGGATTTTTATTCGGGTGATTTGGTTTGGG 725
Query 637 GCAAAGTCTGGGA-GAAATGAGCCGTTTTGGCCGGCTATTGTTATCGATCCAATGACACA 695
| ||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 726 GTAAA-TCTGGGAGGAAA-GAGCCGTTTTGGCCGGCTATTGTTATTGATCCAATGACGCA 783
Query 696 AGCACCCGAGCTTGTTTTGCGTTCTTGTATACCCGATGCAGCCTGTGTTGTGTTCTTTGG 755
||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 784 AGCGCCTGAGCTTGTTTTGCGTTCTTGTATACCTGATGCAGCCTGTGTTATGTTCTTTGG 843
Query 756 TCACTCTGGGAAC-GAGAATGAAAGGGACTATGCATGGGTGAGGAGAGGGATGATCTTCC 814
||| |||||| || |||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct 844 TCATTCTGGG-ACAGAGAATGAAAGGGATTATGCATGGGTTAGAAGAGGGATGATTTTCC 902
Query 815 CTTTTGTGGACTATGTTGCCAGGTTCCAGGAACAGCCTGAACTGCAAGGGTGCAAGCCT- 873
| |||||||| ||||| | |||||| || |||||| ||||||||| || ||||| |||
Sbjct 903 CATTTGTGGATTATGTAGACAGGTTTCAAGAACAGTCTGAACTGCGTGGATGCAACCCTA 962
Query 874 GGGAATTTTCAGATGGCA-TTGGAGGAAGCAT-TTTTGGCAGATC-AGGGATTCACGGAG 930
||| |||||||||||||| || || ||||| | |||||||||| | |||| ||||| ||
Sbjct 963 GGG-ATTTTCAGATGGCACTT-GAAGAAGC-TCTTTTGGCAGACCAAGGG-TTCACAGAA 1018
Query 931 AAGTTGATGCATGATATTCACTTGGCTGCTGGGAACTC-GACTTTTGACGATTCTTTCTA 989
||| ||||||| |||||||||||||| || || ||| | || |||||| |||||| ||||
Sbjct 1019 AAGCTGATGCAGGATATTCACTTGGCCGCAGGTAAC-CAGAGTTTTGATGATTCTGTCTA 1077
Query 990 CAGATGGATTCAAGAAACTGC-GGTCTCAAATCAGGAGCTCAATAACAATGCTCCAAGA- 1047
|||||||||| ||||| |||| || ||| | || | || || || |||||||| |
Sbjct 1078 CAGATGGATTGAAGAAGCTGCAGG-CTCGAGCCAATATCTTGATCACGTTGCTCCAA-AC 1135
Query 1048 CAGGGGCTGTTAAAGAAACACAGAAATCCACTAGCATGTGCAGGATGT-GAAACAGTCAT 1106
|| || | | |||||| ||||||||||| ||| |||| ||||||| ||| | || |
Sbjct 1136 CA-GGAC--ATGAAGAAATACAGAAATCCAAGAGCCTGTGTAGGATGTGGAATGATTC-T 1191
Query 1107 TTCTTTTGAGATGGCaaaaaaaaTGAAAGATCTGATTCCTGGAGATCAATTGTTGTGTAA 1166
|||||| |||||||| | |||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1192 TTCTTTAAAGATGGCACAGAAAATGAAAGCTCTGATTCCCGGAGATCAATTATTGTGTAA 1251
Query 1167 ACCATGTTCAAGGTTAACAAAATCAAAACACATTTGTGGTATATGCAAGAAGATAAGGAA 1226
||| ||||||||| | |||||| | ||||| ||||||| ||||||||||||||| ||||
Sbjct 1252 ACCTTGTTCAAGGCTGACAAAACCGAAACAGGTTTGTGGGATATGCAAGAAGATATGGAA 1311
Query 1227 TCATTTGGACAATAAAAGCTGGGTGCGCTGTGATGGTTGTAAAGTCCGGATACACGCAGA 1286
||||||||| | | | ||||||||||| |||||||| ||||||||| |||| ||| |||
Sbjct 1312 TCATTTGGATAGTCAGAGCTGGGTGCGTTGTGATGGGTGTAAAGTCTGGATTCACTCAGC 1371
Query 1287 ATGTGACCAAATATCAGATAGGCATTTGAAGGATTTGCGGGAAACAGATTACTACTGTCC 1346
||||| ||||||||| ||| |||||| ||||||||| |||||||||||||||| |||||
Sbjct 1372 GTGTGATCAAATATCACATAAGCATTTTAAGGATTTGGGGGAAACAGATTACTATTGTCC 1431
Query 1347 TACTTGCAGAGCAAAATTTAACTTTGACCTATCAGATTCAGAAAAACAAAACTCAAAGTC 1406
|| |||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 1432 CACATGCAGAACAAAATTTAACTTTGAGTTATCAGATTCAGAAAAACAAGACTCAAAATC 1491
Query 1407 AAAAGTT-GCGAAAGGCGATG-GTCAGATGGTTCTTCCTGACAAGGTTATTGTTGTATGC 1464
||| || || ||| || ||| || ||||| |||||||| || |||||||||||||||
Sbjct 1492 CAAACTTGGC-AAAAGCAATGCCCCA-ATGGTGCTTCCTGATAAAGTTATTGTTGTATGC 1549
Query 1465 GCTGGAGTAGAAGG-AGTTTATTTCCCGAGGCTCCATTTAGTGGTATGTAAATGTGGCTC 1523
||||||||||||| | | ||||| || || || |||||||| |||||||| ||||| ||
Sbjct 1550 TCTGGAGTAGAAGGCA-TATATTTTCCAAGCCTTCATTTAGTCGTATGTAAGTGTGGATC 1608
Query 1524 CTGTGGACCTAAAAAGAAAGCCCTTAGCGAATGGGAAAGGCATACCGGATC-AAAGTCAA 1582
||||||||| ||| |||||| ||||| ||||||||||||||||| || || |||| |||
Sbjct 1609 TTGTGGACCTGAAAGGAAAGCACTTAGTGAATGGGAAAGGCATACTGGTTCAAAAG-CAA 1667
Query 1583 AAAATTGGAAG-ACCAGTGTGAAAGTCAAAAGCTCGAAGCTGGCACTAGAAGATTGGATG 1641
|||||||| || || ||||| ||||| |||||||| |||||| | |||||||| ||||||
Sbjct 1668 AAAATTGG-AGAACTAGTGTTAAAGTTAAAAGCTCCAAGCTGCCGCTAGAAGAATGGATG 1726
Query 1642 ATGAACTTAGCAGAGTTACATGCAAATGCTACTGCAGCTAAAGTTCCTAAACGACCTTCC 1701
||||| ||||||||||| || ||||||||||||||||| ||| |||||||||||| ||
Sbjct 1727 ATGAAATTAGCAGAGTTCCACGCAAATGCTACTGCAGCAAAACCTCCTAAACGACCCTCT 1786
Query 1702 ATAAAGCAGAGAAAGCAGAGATTGCTTGCTTTTCTATCAGAG-ACA-TATGAGCCGGTCA 1759
|||||||||||||||||||| |||||| | ||||| | |||| | | || ||||||||||
Sbjct 1787 ATAAAGCAGAGAAAGCAGAGGTTGCTTTCCTTTCT-T-AGAGAAAAGTACGAGCCGGTCA 1844
Query 1760 ATGCGAAGTGGACAACAGAACGATGTGCAGTTTGCAGATGGGTTGAAGATTGGGACTACA 1819
| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 ACGTGAAGTGGACAACCGAGCGATGTGCAGTTTGCAGATGGGTTGAAGATTGGGACTACA 1904
Query 1820 ACAAGATTATTATCTGCAACAGATGCCAAATAGCAGTGCATCAGGAATGCTATGGCG-CT 1878
||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| | |
Sbjct 1905 ACAAGATCATTATCTGCAACAGATGTCAAATCGCAGTTCATCAGGAATGCTATGG-GACG 1963
Query 1879 AGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAG 1938
||| | |||||||||||||| ||||||||||| ||||| ||||||| ||| || |||||
Sbjct 1964 AGAAACGTTCGTGATTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGATCAAA 2023
Query 1939 CGGGAGTGTTGCCTCTGCCCTGTAAAAGGAGGTGCATTGAAGCCAACTGATGTGGAAACG 1998
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2024 CGAGAGTGTTGCCTCTGTCCTGTAAAAGGAGGTGCATTGAAGCCAACTGATGTGGAGACG 2083
Query 1999 TTGTGGGTTCATGTGACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAGGAA 2058
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2084 CTGTGGGTTCACGTAACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAA 2143
Query 2059 AAAATGGAACCTGCAGTTGGG-ATTTTGAGTATTCCATCAACTAATTTTGTGAAGATATG 2117
||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 2144 AAAATGGAACCAGCT-TTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGATTTG 2202
Query 2118 TGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTA 2177
|||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||
Sbjct 2203 TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTA 2262
Query 2178 TCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAATGGAGTTGCACTGCTTGGAGAAAAA 2237
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2263 TCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGTTGCACTGCTTGGAGAAAAA 2322
Query 2238 TGGTC-AGCAGATAACAAAGATGGTGTCCTATTGTGCTTATCACAGGGCTCCCAACCCAG 2296
||||| | |||||||||||||||||||| |||||| |||||||||||||||| || ||||
Sbjct 2323 TGGTCGA-CAGATAACAAAGATGGTGTCGTATTGTTCTTATCACAGGGCTCCGAATCCAG 2381
Query 2297 ATAAC-GTGTTAATTATACAAACTCCTTCAGGAGCCTTCTCTGC-AAAGAGTCTTGTCCA 2354
||| | || ||||| |||||||| |||||||| | ||| ||||| ||| |||||||| ||
Sbjct 2382 ATA-CTGTATTAATAATACAAACGCCTTCAGGGGTCTTTTCTGCGAAA-AGTCTTGTTCA 2439
Query 2355 AAACAAGAAGAAAGGTGGTTCCAGGCTTATTTCATTAATCAGAGAAGACGATGAAG---C 2411
||| || |||||| ||||| |||||||||| | || ||||||||| | ||||| |
Sbjct 2440 AAATAAAAAGAAAACAGGTTCGAGGCTTATTTTAGCAAACAGAGAAGAAGTTGAAGAGTC 2499
Query 2412 A-CCTGCAGAGAATACCATTAC-A-TGTGATCCATTTTCTGCTGCTCGTTGTCGAGTATT 2468
|| |||||| ||||||| || | | ||| ||||||||| |||||||||||||| |||
Sbjct 2500 CGCC-GCAGAGGATACCAT-ACCAAT-TGACCCATTTTCTTCTGCTCGTTGTCGACTATA 2556
Query 2469 TAAAAGAAAGATCAATAGCAAGAAGAGGATTGAAGAAGAAGCCATTCCTCACCACACAAG 2528
|||||||| | | |||||||||||||||| | ||||||||| ||||||||||||| |||
Sbjct 2557 TAAAAGAACGGTTAATAGCAAGAAGAGGACTAAAGAAGAAGGTATTCCTCACCACA-AAG 2615
Query 2529 G-GGACCACGCCATCATGCATCAGCAGCAATCCAAACTTTAAACACATTCAGACATGTGC 2587
| |||||||| |||||| | |||||||| ||||||||||| ||| ||||||| ||||||
Sbjct 2616 GAGGACCACGTCATCATCCTTCAGCAGCGATCCAAACTTTGAACGCATTCAGGCATGTGG 2675
Query 2588 CAGAAGAACCCAAATCGTTTTCTTCTTTCAGGGAACGACTTCACCACTTGCAGAGGACAG 2647
||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 2676 CAGAAGAGCCCAAATCATTTTCCTCGTTCAGGGAACGGCTTCACCACTTGCAGAGGACAG 2735
Query 2648 AAATGGATCGGGTCTGCTTTGGGCGATCTGGAATTCATGGATGGGGTCTTTTTGCAAGAA 2707
|||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct 2736 AAATGGATCGGGTCTGCTTTGGTCGATCTGGGATACATGGATGGGGCCTTTTTGCAAGAA 2795
Query 2708 GAAATATCCAAGAAGGAGAAATGGTTCTTGAATACAGAGGGGAACAGGTGAGAGGTAGCA 2767
||||||| ||||||||||||||||||||||||||| | |||||||| |||||||| | ||
Sbjct 2796 GAAATATTCAAGAAGGAGAAATGGTTCTTGAATACCGTGGGGAACAAGTGAGAGGAATCA 2855
Query 2768 TTGCAGACTTGAGAGAAGCACGTTATCGCAGAGTAGGAAAGGATTGCTATCT-TTTCAAG 2826
|||| ||||| || |||||| | ||||| || | ||| |||||||||||||| ||| |||
Sbjct 2856 TTGCGGACTTAAGGGAAGCAAGATATCGTAGGGAAGGGAAGGATTGCTATCTGTTT-AAG 2914
Query 2827 ATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAAT 2886
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| || || ||
Sbjct 2915 ATCAGTGAGGAAGTAGTGGTGGATGCGACAGAAAAAGGGAATATCGCTCGACTAATAAAC 2974
Query 2887 CATTCGTGTACACCAAACTGCTATGCGAGGATTATGAGTGTAGGAGATGAGGAAAG-CAG 2945
|||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| | |
Sbjct 2975 CATTCGTGTATGCCAAATTGCTATGCAAGGATTATGAGTGTAGGAGATGATGAAAGTC-G 3033
Query 2946 GATTGTCCTGATAGCCAAGGCCAATGTAGCTG-TGGGAGAGGAGTTAACGTATGATTACT 3004
|||||| ||||| |||||| ||| ||||||| ||| ||||||||||| ||||||||||
Sbjct 3034 GATTGTTCTGATTGCCAAGACCACTGTAGCTTCTGGC-GAGGAGTTAACATATGATTACT 3092
Query 3005 TATTTGATCCAGACGAGGCAGAGGAACTCAAGGTGCCATG-CTTATGTAAAGCCCCTAAC 3063
| ||||||||||| ||| | || ||| |||||||||| || || ||||||| ||||||||
Sbjct 3093 TGTTTGATCCAGATGAGCCTGACGAATTCAAGGTGCCGTGTCT-ATGTAAATCCCCTAAC 3151
Query 3064 TGCAGGAAATTCATGAATTAGA 3085
||||||||||||||||||||||
Sbjct 3152 TGCAGGAAATTCATGAATTAGA 3173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124638551575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5