BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27940.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945245 jgi|Araly1|945245|scaffold_701474.1 2052 0.0
> Ahg945245 jgi|Araly1|945245|scaffold_701474.1
Length=1295
Score = 2052 bits (1111), Expect = 0.0
Identities = 1231/1287 (96%), Gaps = 15/1287 (1%)
Strand=Plus/Plus
Query 261 AAAAAAGTTAAATGGTTGAGGCAGAGCGCGCGGAGAATAGTTGGATTGCTTCGGAAACGT 320
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 11 AAAAAAGTTAAATGGTTGAAGCAGAGCGCGCGGAGAATAGTTGGATTGCTTCGGAAATGT 70
Query 321 C-TCCGTCGTCGTCTCCGGTGGTAATAGAAAGCAGTGATTTTTCGAT-A---A--C---T 370
| | ||||||||||||||| || |||||||||| ||||||||||||| | | | |
Sbjct 71 CGT-CGTCGTCGTCTCCGGCGGCAATAGAAAGCCGTGATTTTTCGATCATTGATTCGAGT 129
Query 371 GA---TGGAATGAGAGATGTGAGCGGATTTGGTATAGCTTCTCGACCTCAGTTGGACAAG 427
|| |||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 130 GATGGTGGAATAAGAGATGTGAGAGGATTTGGTATAGCTTCTCGGCCTCAGTTGGAGAAG 189
Query 428 GGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGCCGGAGCTGCG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGCCGGAGCTGCG 249
Query 488 GTTTTGTCCGCCGTTACTCTAAATCCTCTTGACGTTGTCAAGACTCGATTGCAAGCTCAA 547
|||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 250 GTTTTGTCTGCTGTTACTTTAAATCCTCTTGACGTTGTTAAGACTCGATTGCAAGCTCAA 309
Query 548 GCCGCCGGAATGTCGTACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTT 607
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GCCGCCGGAATGTCTTACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTT 369
Query 608 GGCCCAAACATGATGTTTGCAGACTTGAGATGTTCTCCTTCATGTGCACGCGCTGGTGTT 667
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 GGACCAAACATGATGTTTGCAGACTTGAGATGTTCTCCTTCATGTTCACGCGCTGGTGTT 429
Query 668 GAAGGTACTGTTTCTATTTGCCCACCGGATTGTTTCCAGTACAAAGGAACATTTGATGTC 727
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 430 CAAGGTACTGTTTCTATTTGCCCACCGGATTGTTTCCAGTACAAAGGAACTTTTGATGTC 489
Query 728 TTCACCAAGATCATACGACAGGAGGGTCTGGGACGCCTTTGGAGAGGGACTAATGCTGGT 787
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 490 TTCACCAAGATTATACGACAGGAGGGTCTAGCACGCCTTTGGAGAGGGACTAATGCTGGT 549
Query 788 CTTGCCCTAGCTGTGCCCATGGTTGGGATATATCTCCCATTCTATGATATGTTCCGCAAC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 550 CTTGCCCTAGCTGTGCCCATGGTTGGGATATATCTCCCATTCTATGATATGTTTCGCAAC 609
Query 848 CGGTTGGAAGAATTATCTCGGGAGAAAGCTCCTGCTATGACATTTTGTGTGCCTACTGTG 907
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CGATTGGAAGAATTATCTCGGGAGAAAGCTCCTGCTATGACATTTTGTGTGCCTACTGTG 669
Query 908 GCAGGGTCTTTAGCGCGGTCCTTAGCTTGTACAGTCTGCTATCCTATTGATCTTGCAAGA 967
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 670 GCAGGGTCCTTAGCGCGGTCCTTAGCTTGTACAGTGTGCTATCCTATAGATCTTGCAAGA 729
Query 968 ACGCGTATGCAGGCATTCAAAGAAGCAAAAGCCGGTGTGAAGCCTCCGGGAGTTTTTAAA 1027
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 730 ACGCGTATGCAGGCATTCAAAGAAGCAAAAGCTGGTGTGAAGCCTCCGGGAGTTTTTAAA 789
Query 1028 ACTCTAGTTGGTGTTTTCTCTGAAGTCAGGACAGCAAATAACCTTGAAAGTAGCTTGCAC 1087
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 ACTCTAGTTGGTGTATTCTCTGAAGTCAGGACAGCAAATAACCTTGAAAGTAGTTTGCAC 849
Query 1088 AACTATCGTGGTCTCTGGAGAGGCTTGGGTGCACAGCTTGCCCGTGATGTTCCATTCTCA 1147
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 850 AACTATCGTGTTCTCTGGAGAGGTTTGGGTGCACAGCTTGCCCGTGATGTTCCATTTTCA 909
Query 1148 GCAATCTGCTGGTCGACCCTCGAGCCAATAAAAAAGAGGCTCCTTGGAGTTGCGGGCAAT 1207
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 910 GCAATCTGCTGGTCGACCCTCGAGCCAATAAAAAAGAGGCTTCTTGGAGTTGCGGGCAAT 969
Query 1208 GATACAAATCTTGTTGGTGTTTTCGGTGCAACCTTTTCTGCTGGATTTATAGCTGGAAGT 1267
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 970 GATACAAATCTTCTTGGTGTTTTCGGTGCAACCTTTTCTGCTGGTTTTATAGCTGGTAGT 1029
Query 1268 ATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGAAG 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGAAG 1089
Query 1328 GACCCTGGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAGGTTTGGAGGGAT 1387
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GACCCTGGTAGGGCATTGATAATGACGACACGACAGACACTAATAGAGGTTTGGAGGGAT 1149
Query 1388 GGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACGTGCAGGACCATCG 1447
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1150 GGAGGGATGAGAGGCCTGTTCATGGGAATGGGTCCACGAGTGGCGCGTGCAGGACCGTCG 1209
Query 1448 GTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAGTATGTTCTGCATCGCCATGCTTCA 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAGTATGTTCTGCATCGCCATGCTTCA 1269
Query 1508 TCATGACCCTGCAAAGTCACTAATCTC 1534
|||||||| |||||||||||||||||
Sbjct 1270 TCATGACCA-GCAAAGTCACTAATCTC 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5