BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28025.1 Length=847 Score E Sequences producing significant alignments: (Bits) Value Ahg491980 jgi|Araly1|491980|fgenesh2_kg.7__1413__AT4G28025.1 743 0.0 > Ahg491980 jgi|Araly1|491980|fgenesh2_kg.7__1413__AT4G28025.1 Length=634 Score = 743 bits (402), Expect = 0.0 Identities = 508/557 (91%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 94 ATATAAAACAGAGACG-A-AA--AACG-TTGCGAAAATACGAAAGGCTTAGAAATGGTGG 148 |||||||||||||||| | || |||| || |||||||| |||||||||||||||||||| Sbjct 1 ATATAAAACAGAGACGAAGAACGAACGCTT-CGAAAATATGAAAGGCTTAGAAATGGTGG 59 Query 149 TGACGTCTTTCTCTTCAGCGCCGCCTATCTTCTTCTTACC-TGGAGCTGATGCTCAGTTT 207 ||||||||||||||||| ||||| ||||||||||||| || |||||||||| ||||| || Sbjct 60 TGACGTCTTTCTCTTCACCGCCGTCTATCTTCTTCTT-CCATGGAGCTGATCCTCAGCTT 118 Query 208 TCTTCTTCCAATGGAAGGTTTGCTATTCCTTCCTCTTCTCTCGTAAAGGGACTAAGAAGA 267 |||| |||||||| | ||||| | |||||||||| ||||||||||||||||||||||| Sbjct 119 ACTTCAACCAATGGACGCTTTGCGACTCCTTCCTCTCCTCTCGTAAAGGGACTAAGAAGA 178 Query 268 CACCAAGATGCAAAGTTGGTGGGCAACAGAGCCAGAGTTGGAGTAGTACGAGTCCTAGCG 327 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 179 CACCAAGATGCAAAGTTGGTGGGAAACAGAGCCAGAGTTGGAGTAGTTCGAGTCCTAGCA 238 Query 328 AACCCAAATGTATCTCCTCCTCCTCCTCCAGGAAAAGCAAAGGTaaaaaaaGAGGTAATC 387 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AACCCAAATGTA--T-CTCCTCCTCCTCCAGGAAAAGCAAAGGTAAAAAAAGAGGTAATC 295 Query 388 ATGGTAGACCCTCTTGAGGCTAAGCGGTTAGCTAGTAAGCAAATGGAAGAGATTAAAGGC 447 |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct 296 ATGGTAGACCCTCTTGAGGCCAAGCGGTTAGCTGGCAAGCAAATGGAAGAGATTAAAGGC 355 Query 448 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATTAACGGAGCATGGGCAATCATA 507 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 356 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATAAACGGAGCATGGGCAATCATA 415 Query 508 GGACTCATGATAGGGCTGGTGATCGAAGCTCAAACGGGGAAGGGTATTCTGGCTCAGTTG 567 ||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 416 GGACTCACGATAGGGCTGGTGATCGAAGCCCAAACAGGGAAGGGTATCCTGGCTCAGTTG 475 Query 568 GCTGGTTATTGGTCTGCAGTTGTCCATTTGTTCACTCCATCAACTTAGAATGAA----TT 623 ||||||||||||||||| ||| | ||| | || ||||||||| ||||||||| || Sbjct 476 GCTGGTTATTGGTCTGCGGTTTTGCATCTATTTGTTCCATCAACATAGAATGAAAAACTT 535 Query 624 AAGTTTCATTTGGTTTT 640 |||||||||||||||| Sbjct 536 GAGTTTCATTTGGTTTT 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31337037774 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5