BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28030.1 Length=910 Score E Sequences producing significant alignments: (Bits) Value Ahg328890 jgi|Araly1|328890|fgenesh1_pm.C_scaffold_7001117 1310 0.0 Ahg905615 jgi|Araly1|905615|Al_scaffold_0003_2743 486 1e-136 Ahg889885 jgi|Araly1|889885|Al_scaffold_0007_1871 486 1e-136 Ahg894531 jgi|Araly1|894531|Al_scaffold_0006_2527 481 5e-135 Ahg923063 jgi|Araly1|923063|scaffold_104344.1 231 5e-60 > Ahg328890 jgi|Araly1|328890|fgenesh1_pm.C_scaffold_7001117 Length=828 Score = 1310 bits (709), Expect = 0.0 Identities = 790/829 (95%), Gaps = 5/829 (1%) Strand=Plus/Plus Query 14 ATGGCGTTTCTCTGTTCGTCTCTCCCAAGTTCATCCTCTATCGCCATTTTCGGCGACCCA 73 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || Sbjct 1 ATGGCGTTTCTCTGTTCGTCTCTTCCAAGTTCATCCTCTATCGCCATTTTCAGCGAGTCA 60 Query 74 AACACAGATGGATCATCACGCTCGTA-TCTTTCGATTCCTTCATTGAAGTTACGGTTCCG 132 |||||||||||||||||||||||| | ||||||||||||||| |||| ||| |||||||| Sbjct 61 AACACAGATGGATCATCACGCTCG-ACTCTTTCGATTCCTTCCTTGAGGTTCCGGTTCCG 119 Query 133 TCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGACAAGTCGACTTTCGTCAT 192 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 120 TCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGATAAGTCGACGTTCGTCAT 179 Query 193 ATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTT 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTT 239 Query 253 CAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCG 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCG 299 Query 313 TGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGC 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGC 359 Query 373 TTGCATAAATGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTTTGAGGATTTATGCTC 432 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 360 CTGCATAAACGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTGTGAGGATTTATGCTC 419 Query 433 TGCATGTAAGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAA 492 | |||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 420 TTCATGCAAGTTTTCTGATGGCATAGAAGACAGAGTTGTGGTGGGGAGCCTCGATCTTAA 479 Query 493 CCAATGTCGTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGA 552 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CCAATGTCGGTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGA 539 Query 553 TTTTGCTAGAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGT 612 ||| || || |||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 540 TTTCGCAAGGGCATACTTAAGCAACGTTTGTGTTGCTAAAGAGCTGCATCGTAATGGAGT 599 Query 613 TGGTTACAAACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATAT 672 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGGTTACAAACTCATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATAT 659 Query 673 GTACGTGCATGTGACGGTAGACAATGAAGCAGCGAAGAGTCTATACATGAAAAGTGGGTT 732 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 660 GTACGTGCATGTGACGGTAGACAATGAAGCTGCGAAGAGGCTATACATGAAAAGTGGGTT 719 Query 733 TGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCT 792 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 720 CGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAACAGGCCACAACGGCT 779 Query 793 CCTCCTCTGGCTCGCCCTTCCTAC--C-TCCCCAATCATGTCCATGTAA 838 |||||||||||| |||| ||||| | ||| |||| |||||||||||| Sbjct 780 CCTCCTCTGGCTATCCCTCCCTACTACCTCCTCAATTATGTCCATGTAA 828 > Ahg905615 jgi|Araly1|905615|Al_scaffold_0003_2743 Length=411 Score = 486 bits (263), Expect = 1e-136 Identities = 337/370 (91%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 441 AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC 500 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 32 AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC 91 Query 501 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 92 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA 151 Query 561 GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 620 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 152 GAGCATACTTGAGCAACGTCTGTGTTGCTAAAGAGCTGCATCGTAATGGAGTTGGTTACA 211 Query 621 AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC 680 |||| ||||| ||||| |||||||| | || |||||||||||||||||||| Sbjct 212 AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC 259 Query 681 ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA 739 |||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | |||||| Sbjct 260 ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA 318 Query 740 GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC 799 ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 319 GAGACTGCTGAGC-AGCGTGGCAAGCTCGATACCTTAATAGACCACAACGGCTCCTCCTC 377 Query 800 TGGCTC-GCC 808 |||||| ||| Sbjct 378 TGGCTCCGCC 387 > Ahg889885 jgi|Araly1|889885|Al_scaffold_0007_1871 Length=411 Score = 486 bits (263), Expect = 1e-136 Identities = 337/370 (91%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 441 AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC 500 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 32 AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC 91 Query 501 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 92 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA 151 Query 561 GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 620 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 GAGCATACTTAAGCAATGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 211 Query 621 AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC 680 |||| ||||| ||||| |||||||| | || |||||||||||||||||||| Sbjct 212 AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC 259 Query 681 ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA 739 |||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | |||||| Sbjct 260 ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA 318 Query 740 GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC 799 ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 319 GAGACTGCTGAGC-AGCGTGGCAAGCTCGATACCTCAATAGACCACAACGGCTCCTCCTC 377 Query 800 TGGCTC-GCC 808 |||||| ||| Sbjct 378 TGGCTCCGCC 387 > Ahg894531 jgi|Araly1|894531|Al_scaffold_0006_2527 Length=411 Score = 481 bits (260), Expect = 5e-135 Identities = 336/370 (91%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 441 AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC 500 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 32 AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC 91 Query 501 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 92 GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA 151 Query 561 GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 620 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 GAGCATACTTAAGCAATGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA 211 Query 621 AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC 680 |||| ||||| ||||| |||||||| | || |||||||||||||||||||| Sbjct 212 AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC 259 Query 681 ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA 739 |||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | |||||| Sbjct 260 ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA 318 Query 740 GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC 799 ||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 319 GAGACTGTTGAGC-AGCGTGGCAAGCTCGATACCTCAATAGACCACAACGGCTCCTCCTC 377 Query 800 TGGCTC-GCC 808 |||||| ||| Sbjct 378 TGGCTCCGCC 387 > Ahg923063 jgi|Araly1|923063|scaffold_104344.1 Length=408 Score = 231 bits (125), Expect = 5e-60 Identities = 143/151 (95%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 660 GCATAACGGATATGTACGTGCATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATAC 718 |||||||||||||||||||||||||||| |||| |||||||||||| | |||| |||||| Sbjct 111 GCATAACGGATATGTACGTGCATGTGACAGTAGCCAATGAAGCAGC-ACAGAGGCTATAC 169 Query 719 ATGAAAAGTGGGTTTGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAAT 778 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 ATGAAAAGTGGGTTCGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAAC 229 Query 779 AGGCCACAACGGCTCCTCCTCTGGCTC-GCC 808 ||||||||||||||||||||||||||| ||| Sbjct 230 AGGCCACAACGGCTCCTCCTCTGGCTCCGCC 260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33738781545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5