BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28100.1 Length=1270 Score E Sequences producing significant alignments: (Bits) Value Ahg491965 jgi|Araly1|491965|fgenesh2_kg.7__1398__AT4G28100.1 1993 0.0 > Ahg491965 jgi|Araly1|491965|fgenesh2_kg.7__1398__AT4G28100.1 Length=1255 Score = 1993 bits (1079), Expect = 0.0 Identities = 1201/1260 (95%), Gaps = 7/1260 (1%) Strand=Plus/Plus Query 1 CTCTCTTCACAATAGTCCTTTGGACAGAACAAAAGAGAGAGAAGATAGTGAATAATGGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCTCTTCACAATAGTCCTTTGGACAGAACAAAAGAGAGAGAAGATAGTGAATAATGGAA 60 Query 61 GGCTGCTTTTCTTCGTGAATCTCAGAATCTTAAAAGACTCAGATTTGAGAAAACGTTTCA 120 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 61 GGCTGCTTTTCTTCGTGAATCTCAGAATCTAAAAAGACTCAGATTTGAGAAAGCGTTTCA 120 Query 121 ATATCTAAATCCATTTCTCTCCCTCTCTCTTTAGCCATTTAGAATGAAGAAAAGtctcac 180 || ||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| Sbjct 121 ATTTCTAAATCCATTTCTCT--CTCTCTCTCTAGCCATTTACAATGAAGAAGAGTCTCAC 178 Query 181 tctactcatcctcctcctctgttctctcctcttctccACCGTCTTGAGCAACCTACTCGT 240 | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 179 TTTACTCATCCTCCTCCTCTGTTCTCTCCTCTCCTCCACCGTCTTGAGCAACCTACTCGC 238 Query 241 CGAACCGGTCCAACCCAACACCGTACCAGCCTTCCCCGTCGAAACCCAAGCTCAAAGCTG 300 ||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 239 CGAACCGGTCCAACCCAACACTGTACCGGCATTCCCCGTCGAAACCCAAGCTCAAAGCTG 298 Query 301 CCGACTTGACCTCTCCAACGAGCTATTCGGTGGCGTCAACGAAGCTTGCGGAAGAAACCT 360 |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 299 CCGACTTGACCTCTCCAACGAGCTCTTTGGTGGTGTCAACGAAGCTTGCGGAAGAAACCT 358 Query 361 TGACCGGAGTCGATGTTGCCCTGTTTTAGCCGCTTGGCTCTTCGCAGCTCACGCTCGCTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TGACCGGAGTCGATGTTGCCCTGTTTTAGCCGCTTGGCTCTTCGCAGCTCACGCTCGCTC 418 Query 421 TGCTCTCCAGTTACCAGCTCCTGCTCCAACGCCGGAATCTTCTGATCCCGACGAACCCAT 480 |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TGCTCTCCTGCTCCCAGCTCCTGCTCCAACGCCGGAATCTTCTGATCCCGACGAACCCAT 478 Query 481 GAAGCCTGACGACTCTCAGAAGTGCGTCAACACATTGCAAAGTGCGCTTTTGACTAAACA 540 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 479 GAAGCCTGACGACTCACAGAAGTGCGTCAACACATTGCAAAGCGCGCTTTTGACCAAACA 538 Query 541 AATCAAGATCCCTCAGCCTAATTCTAGCTGTGACGCAATCTTGTGCTTCTGTGGTATTCG 600 |||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| Sbjct 539 AATCAAGATCCCTCAGCCTAATTCAAGCTGCGATGCAATCTTGTGCTTCTGTGGCATTCG 598 Query 601 TCTCCACCAGATTAGCTCACTCTCTTGTCCCGCCGCTTTCAATGTCTCCTCCGGCTTCAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCTCCACCAGATTAGCTCACTCTCTTGTCCCGCCGCTTTCAATGTCTCCTCCGGCTTCAA 658 Query 661 AAACGCAACTCCGACCGCCGCCGTGAAGAATCTTGAAAAAGAATGCCGGAACTCTTCTTA 720 ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 659 AAACGCAACTCCGACCGCCGCCGTGAAGAATCTTGAAAAAGAATGTCGGAATTCTTCGTA 718 Query 721 CTCCGGTTGTACCAGATGCCTCGGTGCTCTTCAAAAGCTAAAGGTAAGAGGAGGAAACAA 780 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 719 CTCCGGTTGTACCAGATGCCTCGGTGCTCTTCAAAAGCTAAATGTTAGAGGAGGAAACAA 778 Query 781 GAAGACAACAACAGAGAGAGGGACTAAGATGATGAGCAAAGATTGCCAGCTCATGGGACT 840 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct 779 GAAGACAACAACAGAGAGAGGGAGTAAGATGATGAGCAAAGACTGCAAGCTCATGGGACT 838 Query 841 CACATGGCTACTAGCTCGTAACAAAACGGCATACATTCCCACTGTTTCGGCTGTGTTAAG 900 |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 839 CACATGGCTACTGGCTCGTAACAAAACGGCATACATTCCCACCGTTTCAGCTGTGTTAAG 898 Query 901 AGCTATTATGTATAGTCCACACCCACCTCACCTCAACAAGTGTAGTCCTGACCAAGAGAA 960 ||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 899 AGCCATTATGTATAGTCCACACCCTCCTCATCTCAACAAGTGCAGTCCTGACCAAGAGAA 958 Query 961 CATGCCTTTAGCAGTTGACTCTCTACAGTTTCAAAAGAGCTTCTCTTCATCATCTCATCT 1020 |||||||||||| |||||||||||||||||| | | |||| ||||||||||||||||||| Sbjct 959 CATGCCTTTAGCCGTTGACTCTCTACAGTTTGAGAGGAGCCTCTCTTCATCATCTCATCT 1018 Query 1021 TTTTGGGGTTTTACCGTTTTTACCCTTAGTCCTTTGTATCTTTCTCTTTCTACTGTGAtt 1080 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1019 TTTTGGGGTTTTACCGTTTTTACCCTTAGTCCTTTGTACCGGTCTCTTTCTACTGTGATT 1078 Query 1081 tttttCTGTATTTTTTGGTCGGGAGGGGTAAAGAGAGTCACGTGAAGCTACAAGACAGTT 1140 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TTTCT-T-TATTTTTTGGTCGGGAGGGGTAAAGAGAGTCACGTGAAGCTACAAGACAGTT 1136 Query 1141 ATGTGT--ATGTAAATGCTGTGCTCtttttttGGTTCTGCAAACTCTTAACCCTCATTTT 1198 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1137 ATGTGTGTATGTAAATGCTGTGCTCTTCTTTTGGTTCTGCAAACTCTTAACCCTCATTTT 1196 Query 1199 TTGGTTTTAACTGTGTTTTGTCCCATTTAACACTTTGTACGAGGTCTTGAAATTTTAAAA 1258 | ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1197 T-GGTTTTAACTGTGTTTTGTCCAATTTAACACTTTGTCCGAGGTCTTGAAATTTTAAAA 1255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47463031665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5