BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28140.1 Length=1218 Score E Sequences producing significant alignments: (Bits) Value Ahg491962 jgi|Araly1|491962|fgenesh2_kg.7__1395__AT4G28140.1 1493 0.0 > Ahg491962 jgi|Araly1|491962|fgenesh2_kg.7__1395__AT4G28140.1 Length=1156 Score = 1493 bits (808), Expect = 0.0 Identities = 972/1047 (93%), Gaps = 27/1047 (3%) Strand=Plus/Plus Query 123 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTTGATCAT 182 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 105 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTGGATCAT 164 Query 183 TCTTTTGGAGGAGAAGCTTCTTCCACGTCCCCAAGATCTATGAAGAAAATGAAGAGTCCT 242 |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 165 TCTTTT---GGAGAAGCTTCTTCCACGTCCCCAAGGTCTATGAAGAAGATGAAGAGTCCT 221 Query 243 AGTCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGAGGCTTTCCCT 302 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 222 AATCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGGGGCTTTCCCT 281 Query 303 TTTTCTCTCGATCCAACACTTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGGTA 362 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 282 TTTTCTCTCGATCCAACAATTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGG-- 339 Query 363 CTTGAGCAACGACAAGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCCTTTAGTCCT 422 ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 340 -TTGAGCAACAACATGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCGTTTAGTCCT 398 Query 423 CAACAACAACAACAGCAGCAGCAGTATATGGCCCAGTACTGGAGTGACACATTGAATCTG 482 ||||||| | | |||||||||||||||||| ||||||||||||||||||||||| || Sbjct 399 ---CAACAAC-A-A-CAGCAGCAGTATATGGCCAAGTACTGGAGTGACACATTGAATTTG 452 Query 483 AGTCCAAGAGGAAGAATGATGATGATGATGAGCCAAGAAGCTGTTCAACCTTACATCGCA 542 ||||||||||||||||||||||| | |||||||||||| |||||||||| || | |||| Sbjct 453 AGTCCAAGAGGAAGAATGATGAT--T-ATGAGCCAAGAAACTGTTCAACCCTATAGCGCA 509 Query 543 ACGAAGCTGTACAGAGGAGTGAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 602 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 510 ACCAAGCTGTACAGAGGAGTAAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 569 Query 603 AAGCCACGAAGCAGGGCACGTCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 662 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 570 AAGCCACGAAGCAGGGCACGGCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 629 Query 663 ATGGCCTACGACCGCCAAGCCTTCAAATT-ACGAGGCCACAGCGCAACACTGAATTTCCC 721 ||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||| Sbjct 630 ATGGCCTACGACCGCCAAGCCTTCAAATTGAGG-GGCCACAGCGCAACACTGAACTTCCC 688 Query 722 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCGGATCAGAAAGA 781 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 689 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCAGATCAGAAGGA 748 Query 782 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAGAGCAAGGAACTACCGGTGATTGA 841 |||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 749 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAAAGCAAGGAACTAGCGGTCATTGA 808 Query 842 TGTTGGGAGAGAGGAAGGTATGGCTGAGGCATGGTACAATGCCATTACATCGGGATGGGG 901 |||||||||||| ||||| ||||||||||| ||||||||||| | |||||||| ||||| Sbjct 809 TGTTGGGAGAGACGAAGGCATGGCTGAGGCGTGGTACAATGCGGTGACATCGGGTTGGGG 868 Query 902 TCCTGAAAGTCCTCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCATCAGAAAGCTC 961 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 869 TCCTGAAAGTCCCCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCA---GAAAGCTC 925 Query 962 ATCTTCTTCTCCTCTCTCTTGTCCTATGAGGCCTTTCTTTTGAAAAAGTTTATAAACCCA 1021 |||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| |||| Sbjct 926 ATCTTCTTCTTCTCTCTCTTGTCCCATGAGACCTTTCTTTTGAAAAAGGTTATAAGCCCA 985 Query 1022 CATTGTGTTGTAGGTTATAGTTTAGGGTTATGCTCATTGGCATTTGGATGGAGGCAATTT 1081 |||||| | ||||||| |||||||||||| | ||||||||||||||||||||| || ||| Sbjct 986 CATTGT-T-GTAGGTTGTAGTTTAGGGTTCTACTCATTGGCATTTGGATGGAGACAGTTT 1043 Query 1082 TTGTGATCTCCCA-TTCCACCACATATCAGTCATTATATGTGTCTACCTTTTCTCTGTAT 1140 ||||||||||||| ||| || |||| ||||||||||||||||||||||| ||||||||| Sbjct 1044 TTGTGATCTCCCACTTC-AC-ACAT--CAGTCATTATATGTGTCTACCTTCTCTCTGTAT 1099 Query 1141 TTCTATCATTATCATTGTTTTTATTAT 1167 ||||||| | ||||||| ||||| ||| Sbjct 1100 TTCTATCGTCATCATTGATTTTAATAT 1126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45480639981 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5