BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28220.1
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945213 jgi|Araly1|945213|scaffold_701442.1 2793 0.0
> Ahg945213 jgi|Araly1|945213|scaffold_701442.1
Length=1764
Score = 2793 bits (1512), Expect = 0.0
Identities = 1680/1761 (95%), Gaps = 12/1761 (1%)
Strand=Plus/Plus
Query 67 AGACTTTTCACCAAAATGACATTACTTTCCTCTCTCGGAAGAGCCTCTCGATCTGCTCCA 126
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 7 AGACTCTTCACCAGAATGACATTACTTTCCTCTCTCGGAAGAGCCTCTCGATCTGCCCCA 66
Query 127 CTTGCCTCTAAGCTCCTCCTCCTCGGCACTCTCAGCGGTGGAAGTATAGTGGCATACGCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 67 CTTGCCTCTAAGCTCCTCCTCCTCGGCACTCTCAGCGGTGGAAGTATAGTGGCATACTCA 126
Query 187 GATGCTAACGAAGAAGCTAACAAAAAGGAGG---AGCA--T-AAGAAGAAGAAAGTAGTT 240
||| |||||| ||||||||||||||| |||| |||| | ||||||||||||||||||
Sbjct 127 GATTCTAACGCAGAAGCTAACAAAAACGAGGACCAGCAGCTGAAGAAGAAGAAAGTAGTT 186
Query 241 GTGCTTGGGACTGGTTGGGCTGGTATAAG-TTTCCTTAAAGATCTCGACATAACTTCCTA 299
|| ||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 187 GTACTTGGGACTGGATGGGCTGGTATAAGCTTT-CTTAAAGATCTCGACATTACTTCCTA 245
Query 300 CGATGTTCAGGTTGTGTCTCCCCAGAACTACTTTGCCTTTACGCCATTGTTACCTAGCGT 359
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 246 CGATGTTCAGGTTGTGTCTCCACAGAACTACTTTGCCTTTACACCATTGTTACCTAGCGT 305
Query 360 CACTTGTGGAACTGTTGAAGCTAGAAGCATTGTGGAGTCTGTCCGTAATATAACCAAGAA 419
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 306 CACTTGTGGAACTGTTGAAGCTAGAAGTATTGTAGAGTCTGTCCGTAATATAACAAAAAA 365
Query 420 GAAAAATGGGGAAATTGAATTGTGGGAAGCAGATTGTTTTAAGATTGATCATGTTAATCA 479
||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||
Sbjct 366 GAAAAATGGGGAAATTGAATTATGGGAAGCAGATTGTGTTAAGATCGATCCTGTTAACCA 425
Query 480 GAAGGTTCACTGTCGACCAGTTTTCAAGGATGATCCTGAAGCAAGCCAAGAATTTTCCCT 539
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 426 CAAGGTTCACTGTCGACCGGTTTTCAAGGATGATCCTGAAGCAAGCCAAGAGTTTTCGCT 485
Query 540 TGGATATGACTACTTGATCGTAGCAGTGGGAGCTCAAGTTAACACATTTGGCACTCCTGG 599
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 486 TGGATATGACTACTTGATTGTTGCAGTGGGAGCTCAAGTTAATACATTTGGCACTCCTGG 545
Query 600 TGTACTTGAGAATTGCCATTTTCTCAAGGAAGTAGAGGATGCACAGAGGATTCGTAGAGG 659
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 546 TGTACTTGAGAATTGCCATTTTCTCAAGGAAGTGGAGGATGCACAGAGAATTCGTAGAGG 605
Query 660 AGTGATTGATTGCTTTGAAAAAGCAATCCTTCCTGGCCTCACTGAGGAACAAAGAAGAAG 719
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 606 AGTGATTGATTGCTTTGAGAAAGCAATCCTTCCTGGCCTTACTGAGGAACAAAGAAGAAG 665
Query 720 AAAGCTTCATTTTGTAATCGTGGGAGGAGGTCCTACTGGTGTGGAGTTTGCAGCTGAGCT 779
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 666 AAAGCTTCATTTTGTTATTGTGGGAGGAGGTCCAACTGGTGTGGAGTTTGCAGCTGAGCT 725
Query 780 ACATGACTTTATTATAGAGGATATCACCAAAATATACCCTTCAGTCAAAGAGCTCGTAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 726 ACATGACTTTATTATAGAGGATATCACCAAAATATACCCTTCAGTCAAAGAGCTCGTGAA 785
Query 840 AATAACACTCATTCAATCTGGAGACCATATTCTGAATACGTTTGATGAACGTATCAGTTC 899
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 786 AATAACACTCATTCAATCTGGAGATCATATTCTGAATTCGTTTGATGAACGTATAAGTTC 845
Query 900 ATTTGCTGAACAAAAGTTCACGCGAGATGGTATTGATGTTCAGACTGGAATGCGTGTAAT 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 846 ATTTGCTGAACAAAAGTTCACGCGAGATGGTATTGATGTTCAGACAGGAATGCGTGTAAT 905
Query 960 GTCTGTGACTGATAAAGATATCACAGTGAAAGTCAAATCAAGTGGAGAAC-TCGTAAGTA 1018
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 906 GTCTGTGACTGATAAAGATATCACTGTGAAAGTCAAATCAAGTGGAG-ACGTCGTAAGTA 964
Query 1019 TTCCTCATGGATTGATATTGTGGTCCACTGGAGTTGGAACCCGTCCAGTTATCAGCGACT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TTCCTCATGGATTGATATTGTGGTCCACTGGAGTTGGAACCCGTCCAGTTATCAGCGACT 1024
Query 1079 TCATGGAGCAAGTTGGCCAAGGAGGCAGACGTGCGGTGGCAACTAACGAGTGGTTACAAG 1138
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1025 TCATGGAGCAAGTTGGCCAAGGAGGCAGACGTGCGTTGGCAACTAACGAGTGGTTACAAG 1084
Query 1139 TGACAGGATGTGAGAATGTATATGCAGTTGGCGATTGTGCTTCCATAGCTCAACGAAAAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TGACAGGATGTGAGAATGTATATGCAGTTGGCGATTGTGCTTCCATAGCTCAACGAAAAA 1144
Query 1199 TCTTGGGGGATATTGCAAACATATTCAAAGCTGCAGATGCGGACAACTCAGGAACCTTGA 1258
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1145 TCATGGGGGATATTGCAAACATATTCAAAGCTGCAGATGTGGACAACTCAGGAACCTTGA 1204
Query 1259 CCATGGAAGAGTTAGAAGGCGTGGTTGATGATATTATTGTGAGGTATCCGCAGGTGGAGC 1318
|||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 1205 CCATGGAAGAGTTACAAGACGTGGTTGATGATATTCTTGTGAGGTACCCGCAGGTGGAGC 1264
Query 1319 TCTACCTGAAAAGCAAGCATATGAGGCATATTAACGATCTGCTGGCAGATTCTGAAGGAA 1378
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1265 TCTACCTGAAAAGCAAGCATATGAGGAATATTAACGATCTGCTGGCAGATTCTCAAGGAA 1324
Query 1379 ATGCAAGGAAAGAAGTAGACATTGAGGCATTCAAATTGGCTCTCTCGGAGGCTGATTCAC 1438
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1325 ATGCAAGGAAAGAAGTAGACATTGAGGCATTCAAATTGGCTCTCGCGGAGGTTGATTCAC 1384
Query 1439 AGATGAAAACCCTGCCTGCAACTGCTCAGGTCGCTGCCCAGCAAGGTGCTTATCTTGCAA 1498
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1385 AGATGAAGACCCTGCCTGCAACTGCTCAGGTCGCTGCACAGCAAGGTGCTTATCTTGCAA 1444
Query 1499 AATGCTTCAACAGGATGGAGCAGTGTAAAGAGCTACCTGAAGGTCCTAAGCGCTTCAGAA 1558
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 1445 AATGCTTCAACAGGATGGAGCAGTGCAAAGAGCAACCTGAAGGTCCTAAGCGCTTTAGAA 1504
Query 1559 CTGGCGGGCATCATCAGTTTCGCCCCTTCCAGTACAAGCACTTTGGACAATTTGCTCCAC 1618
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 CTGGCGGGCATCACCAGTTTCGCCCCTTCCAGTACAAGCACTTTGGACAATTTGCTCCAT 1564
Query 1619 TAGGAGGGGACCAAGCAGCAGCTGAACTACCTGGAGACTGGGTTTCAGCTGGAAAAAGCG 1678
| ||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||
Sbjct 1565 TGGGAGGGGACCAAGCAGCTGCCGAATTACCTGGAGACTGGGTTTCAGCTGGAAGAAGCG 1624
Query 1679 CCCAGTGGCTCTGGTATTCTGTTTATGCCAGCAAGCAAGTTAGCTGGCGAACGAGGGCTC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1625 CCCAGTGGCTCTGGTATTCTGTTTATGCCAGCAAGCAAGTTAGCTGGCGAACGAGAGCTC 1684
Query 1739 TGGTGGTGTCGGACTGGACAAGGAGGTACATATTCGGGAGGGATTCAAGCCGCATCTGA- 1797
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1685 TGGTGGTGTCGGACTGGACAAGGAGGTACATATTCGGGAGGGACTCAAGCCGCATCTGAG 1744
Query 1798 CTCAATACTGCATTTTGTAAT 1818
| ||||||||||| || ||||
Sbjct 1745 C-CAATACTGCATCTTATAAT 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74314067995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5