BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28240.1 Length=1056 Score E Sequences producing significant alignments: (Bits) Value Ahg491951 jgi|Araly1|491951|fgenesh2_kg.7__1384__AT4G28240.1 470 1e-131 > Ahg491951 jgi|Araly1|491951|fgenesh2_kg.7__1384__AT4G28240.1 Length=851 Score = 470 bits (254), Expect = 1e-131 Identities = 280/293 (96%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 91 TATAATCACTATTAAAGAATGAGTTATCTGAACAAAGTGTGGATGGCAGCATCGTTCGTA 150 |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| Sbjct 46 TATAATCACTATTAAACCATGAGTTATCTGAACAAAGTGTGGATGGCTGCATCATTCGTA 105 Query 151 GCTGTTCAAGGAAACGCCGATCACGGCGTCAAGTTAAAAAGCGGTCTCACCTCTGCTCAC 210 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 106 GCTGTTCAAGGTAACGCCGATCACGGCGTCAAGTTGAAAAGCGGTCTCACCTCTGCTCAC 165 Query 211 CGTCTCCAACGAAGACTTTCCTCCGATCTCCGTCCTCTCGCCGCCGCAGATCTAACCGGC 270 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 166 CGTCTCCAACGAAGACTTTCCTCCGATCTCCGCCCTCTCGCCGCCGCAGATCTAACAGGA 225 Query 271 GACTCTCTCCCTTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCCGATGAGTCTCTC 330 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 226 GACTCTCTCCCCTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCTGATGAGTCTCTC 285 Query 331 CGACAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAAATTCAGATAATGAT 383 || |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 286 CGCCAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAAATTCAGATGATGAT 338 Score = 287 bits (155), Expect = 1e-76 Identities = 283/338 (84%), Gaps = 35/338 (10%) Strand=Plus/Plus Query 485 TCGCTTGAGTCGGATTTTCTGGATGCAAC--TGTATAG-TTTGGTTACATCTCTGTGAAT 541 |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 392 TCGCTTGAGTTGGATTTTCTGGATGCAACTGTGTATAGTTTTGGTTACATCTCTGTGAAT 451 Query 542 ATTAGAATGTTCTAAAAGATCAAAGCAAGCCTTGGATTATGA-GAGAACTCTGTTCATTT 600 ||||||||||||||| ||||||||||||| || || ||| | ||||||||||||||||| Sbjct 452 ATTAGAATGTTCTAAGAGATCAAAGCAAGTGTTCGAATAT-ATGAGAACTCTGTTCATTT 510 Query 601 TCTATATCTTAAAACATCGTTCGCTCACCAACTTTATTACAATCTGGAATCTTGATTGCG 660 ||||||||| |||| ||| | | | | | | | || | | | | || Sbjct 511 TCTATATCT-AAAA-ATC-TG-G---A--A--T------C--T-TG-A-T-T-G----CG 542 Query 661 ATTACCACTAATTTCAACTTTATCCACAGTAAAATACGATTCTAAATTAAACAATAGTAC 720 |||||||||||||||||||||||||||||| |||| ||||||| ||| ||| |||||||| Sbjct 543 ATTACCACTAATTTCAACTTTATCCACAGTGAAATGCGATTCTCAATAAAATAATAGTAC 602 Query 721 TAAAAT-ATTCCAAAACCATCGTTATCCAAAGAGACAGACAAGTCAGTCACTCCATAATG 779 ||| | ||||||||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct 603 CAAA-TGATTCCAAAATCATCGTTATCTATTGAGACAGACAAGTCAGTCACTCCATAATG 661 Query 780 CTTTTATTTATTTATCTATTGTGGTTGTCATTATTGAG 817 ||| ||||||||||| ||| |||||||||||||||||| Sbjct 662 CTTCTATTTATTTATTTATAGTGGTTGTCATTATTGAG 699 Score = 211 bits (114), Expect = 8e-54 Identities = 133/142 (94%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 910 TCTTGGGCTATTTGGCCCATTTATGTAACTTGGCTTTGAATGAAATCGGAGCGTGGCTGC 969 |||||||||| |||||||| ||||||||||||||||||||||||||||||| | |||| Sbjct 712 TCTTGGGCTA--TGGCCCATGAATGTAACTTGGCTTTGAATGAAATCGGAGCGCGTCTGC 769 Query 970 TTAATCCAACGGTCCAAATCTGACGACGCTCCTTAATGGAGTAATGAGTAACGTCTCCTT 1029 || ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 770 TTCATCTAACGGTCCAAATCTCACGACGCTCCTTAATGGAGTAATGAGTAACGTCTCCTT 829 Query 1030 CATTTCCAACGGTCAAATAATC 1051 |||||||||||||||||||||| Sbjct 830 CATTTCCAACGGTCAAATAATC 851 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39304727427 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5