BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28290.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491944 jgi|Araly1|491944|fgenesh2_kg.7__1377__AT4G28290.1         592    1e-168


> Ahg491944 jgi|Araly1|491944|fgenesh2_kg.7__1377__AT4G28290.1
Length=514

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 470/537 (88%), Gaps = 31/537 (6%)
 Strand=Plus/Plus

Query  4    TTTTCCCACATTTTTCTCTCATCTGCCTACGGTTGCAGA-TTTTATTT-TA-TTAACACA  60
            |||||||||||||||||| ||||||||||||||| |||| |||| ||| || ||||||||
Sbjct  1    TTTTCCCACATTTTTCTCCCATCTGCCTACGGTTCCAGATTTTTTTTTATATTTAACACA  60

Query  61   Ga-aaaacaaaaaaaaGTATAAACAGAGTCCACGAATTTGGGAAAGTTT-AAGAT-CA-A  116
            || |||| ||||||||||||||| ||||||||| ||||||||||| ||| ||| | || |
Sbjct  61   GACAAAA-AAAAAAAAGTATAAAAAGAGTCCACAAATTTGGGAAA-TTTCAAGTTCCAGA  118

Query  117  GACATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCGGCTTCTGCCACGGCG  176
            |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || 
Sbjct  119  GACATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCCGCTTCCGCCACCGCC  178

Query  177  ATCTCCGCCGGCTCTACCAACACCTCCGTGTCATTCTCTTCGCCGGAAT-CTAATCTCTC  235
            |||||||||||||| |||||||||| ||| || |||||||||||||||| | ||| | ||
Sbjct  179  ATCTCCGCCGGCTCCACCAACACCTTCGTATCCTTCTCTTCGCCGGAATCCAAATAT-TC  237

Query  236  TCGTCAGGAGGCAAAGGAAAAACAGAGGAAGAAGAAGGGTTCGTCGGAAGATGGGGGAGA  295
             | ||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct  238  CCTTCAGGATTCAAAGGAAAAACAGAGGAAGAAGAAGAGTTCGTCAGAAGATGGGGGAGA  297

Query  296  TGAGAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCA  355
             || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  AGAAAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCA  357

Query  356  CCGATAACATTTGCATTGTTCTGATTTGTAAGGGTTCTTATTGTTTACCCCATTTGATTA  415
            ||||||||||||||||| ||||||||| ||||| |||||||||||||||| || ||||||
Sbjct  358  CCGATAACATTTGCATTATTCTGATTTCTAAGGTTTCTTATTGTTTACCC-ATCTGATTA  416

Query  416  ACTACAAAGATTTACTGATTTTAAGTTTCGttttttttCTTTCTTTCACATCACTATTGT  475
            |||||||||| |||| ||||| ||||| ||  |||||| ||  |   | | |  | ||| 
Sbjct  417  ACTACAAAGAATTACAGATTTAAAGTT-CGGGTTTTTT-TTG-T---A-A-C--T-TTG-  464

Query  476  AACTTCGGCTTAAAGTGTACCACCAAGACAAGAGGCATGATTTATGAGGTTCATGTT  532
                  | |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct  465  ------G-CTTAAACTGTACCACCAAGACAAGAGGCATGATTTATGAGGTTCGTGTT  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5