BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28290.1 Length=550 Score E Sequences producing significant alignments: (Bits) Value Ahg491944 jgi|Araly1|491944|fgenesh2_kg.7__1377__AT4G28290.1 592 1e-168 > Ahg491944 jgi|Araly1|491944|fgenesh2_kg.7__1377__AT4G28290.1 Length=514 Score = 592 bits (320), Expect = 1e-168 Identities = 470/537 (88%), Gaps = 31/537 (6%) Strand=Plus/Plus Query 4 TTTTCCCACATTTTTCTCTCATCTGCCTACGGTTGCAGA-TTTTATTT-TA-TTAACACA 60 |||||||||||||||||| ||||||||||||||| |||| |||| ||| || |||||||| Sbjct 1 TTTTCCCACATTTTTCTCCCATCTGCCTACGGTTCCAGATTTTTTTTTATATTTAACACA 60 Query 61 Ga-aaaacaaaaaaaaGTATAAACAGAGTCCACGAATTTGGGAAAGTTT-AAGAT-CA-A 116 || |||| ||||||||||||||| ||||||||| ||||||||||| ||| ||| | || | Sbjct 61 GACAAAA-AAAAAAAAGTATAAAAAGAGTCCACAAATTTGGGAAA-TTTCAAGTTCCAGA 118 Query 117 GACATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCGGCTTCTGCCACGGCG 176 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 119 GACATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCCGCTTCCGCCACCGCC 178 Query 177 ATCTCCGCCGGCTCTACCAACACCTCCGTGTCATTCTCTTCGCCGGAAT-CTAATCTCTC 235 |||||||||||||| |||||||||| ||| || |||||||||||||||| | ||| | || Sbjct 179 ATCTCCGCCGGCTCCACCAACACCTTCGTATCCTTCTCTTCGCCGGAATCCAAATAT-TC 237 Query 236 TCGTCAGGAGGCAAAGGAAAAACAGAGGAAGAAGAAGGGTTCGTCGGAAGATGGGGGAGA 295 | |||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 238 CCTTCAGGATTCAAAGGAAAAACAGAGGAAGAAGAAGAGTTCGTCAGAAGATGGGGGAGA 297 Query 296 TGAGAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCA 355 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AGAAAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCA 357 Query 356 CCGATAACATTTGCATTGTTCTGATTTGTAAGGGTTCTTATTGTTTACCCCATTTGATTA 415 ||||||||||||||||| ||||||||| ||||| |||||||||||||||| || |||||| Sbjct 358 CCGATAACATTTGCATTATTCTGATTTCTAAGGTTTCTTATTGTTTACCC-ATCTGATTA 416 Query 416 ACTACAAAGATTTACTGATTTTAAGTTTCGttttttttCTTTCTTTCACATCACTATTGT 475 |||||||||| |||| ||||| ||||| || |||||| || | | | | | ||| Sbjct 417 ACTACAAAGAATTACAGATTTAAAGTT-CGGGTTTTTT-TTG-T---A-A-C--T-TTG- 464 Query 476 AACTTCGGCTTAAAGTGTACCACCAAGACAAGAGGCATGATTTATGAGGTTCATGTT 532 | |||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 465 ------G-CTTAAACTGTACCACCAAGACAAGAGGCATGATTTATGAGGTTCGTGTT 514 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20069839814 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5