BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28300.1
Length=1943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491942 jgi|Araly1|491942|fgenesh2_kg.7__1375__AT4G28300.1 2632 0.0
> Ahg491942 jgi|Araly1|491942|fgenesh2_kg.7__1375__AT4G28300.1
Length=1804
Score = 2632 bits (1425), Expect = 0.0
Identities = 1622/1716 (95%), Gaps = 17/1716 (1%)
Strand=Plus/Plus
Query 176 TTTCTCAATCTGGTTTTCAGTCTTCGGATTCAATGGCGTCTGGATCTTCGGGTCGGGTCA 235
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TTTCTCAATCTGGTTTCCAGTCTTCGGATTCAATGGCGTCTGGATCTTCGGGTCGGGTCA 158
Query 236 ACTCAGGATCCAAAGGTTTCGATTTTGGCTCCGATGATATCCTTTGCTCTTATGATGACT 295
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 159 ACTCAGGATCTAAAGGTTTCGATTTTGGCTCCGATGATATCCTTTGCTCTTACGATGACT 218
Query 296 ACACCAACCAAGACTCCTCTAATGGTCCTCACTCCGATCCTGCGATCGCTGCTTCCAACT 355
|||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 219 ACACCAACCAGGACTCCTCTAATGGTCCTAACTCTGATCCTGCGATCGCTGCTGCCAACT 278
Query 356 CCAACAAGGAATTCCATAAAACAAGGATGGCAAGGTCTTCGGTTTTCCCTACAAGCTCTT 415
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 279 CCAACAAGGAATTCCACAAAACTAGGATGGCAAGGTCTTCGGTTTTCCCTACAAGCTCTT 338
Query 416 ACAGTCCACCAGAGGATTCTTTGAGCCAAGACATTACTGACACTGTCGAAAGGACCATGA 475
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 339 ACAGTCCACCAGAGGACTCTTTGAGCCAAGACCTTACTGACACTGTCGAAAGAACCATGA 398
Query 476 AGATGTATGCTGATAACATGATGCGCTTTCTTGAAGGCCTCAGTTCACGCTTGTCTCAGC 535
||| |||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 399 AGAAGTATGCAGATAACATGATGCGCTTTCTTGAAGGTATCAGCTCACGCTTGTCCCAGC 458
Query 536 TTGAACTCTACTGCTACAACCTTGATAAGACCATTGGAGAAATGAGATCGGAGTTGACTC 595
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 459 TTGAACTCTACTGCTACAACCTTGATAAGACAATTGGAGAAATGAGATCGGAGTTGACTC 518
Query 596 ATGCACATGAGGATGCCGATGTGAAGCTTAGATCTCTCGACAAACATCTTCAAGAGGTGC 655
||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 519 ATGAACACGAGGAGGCTGATGTGAAGCTTAGATCTCTGGACAAACATCTTCAAGAGGTGC 578
Query 656 ATAGGTCTGTCCAGATTCTTAGAGACAAACAAGAGCTAGCAGATACTCAGAAAGAGCTAG 715
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 579 ATAGGTCTGTCCAGATTCTCAGAGACAAACAAGAGCTAGCAGATACTCAAAAAGAGCTAG 638
Query 716 CGAAGCTACAACTTGTGCAGAAAGAGTCATCTTCGTCGTCTCACTCTCAACATGGTGAGG 775
|||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 639 CGAAACTTCAACTTGTGCAGAAAGAGTCATCTTCTTCTTCTCACTCTCAACATGGTGAGG 698
Query 776 ACCGTGTCGCCACTCCTGTTCCAGAGCCTAAGAAGAGCGAGAACACCTCTGATGCACACA 835
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 699 ACCGGGTCGCCACTCCTGTTCCAGAGCCTAAGAAGAGCGAGAACACCTCAGATGCACACA 758
Query 836 ACCAGCAGCTTGCACTTGCTTTGCCTCACCAAATAGCCCCACAGCCA-CAGGTGCAGCCG 894
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 759 ACCAGCAGCTTGCACTTGCTTTGCCTCACCAAATAGCTCCACAGCCACCA-GTGCAGCCG 817
Query 895 CAGCCACAGCCACAACAACATCAGTATTACATGCCTCCTCCTCCTACACAGCTTCAAAAC 954
||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 818 CAGCCGCAGCCACAGCAACAGCAGTATTACATG---CCTCCTCCTACACAGCTTCAAAAC 874
Query 955 ACACCTGCACCGGTGCCCGTTTC-TACTCCACCATCACAACTTCAAGCACCACCAGCGCA 1013
||||||||| | ||||| | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 875 ACACCTGCATCAGTGCCTG-TTCTTACTCCACCATCACAACCTCAAGCACCACCAGCGCA 933
Query 1014 GAGTCAGTTCATGCCCCCACCTCCTGCTCCATCTCACCCAAGCTCAGCCCAAACTCAGTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GAGTCAGTTCATGCCCCCACCTCCTGCTCCATCTCACCCAAGCTCAGCCCAAACTCAGTC 993
Query 1074 ATTCCCGCAGTACCAGCAAAACTGGCCACCCCAACCACAAGCCAGGCCACAGTCAAGTGG 1133
||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 994 ATTCCCGCAGTACCAGCAAAACTGGTCACCCCAACCACAGGCCAGGCCACCGTCAAGTGG 1053
Query 1134 AGGCTACCCAACATACTCGCCTGCACCACCAGGCAACCAACCGCCAGTAGAATCGTTGCC 1193
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1054 AGGCTACCCAACATACTCGCCTGCACCACCAAGCAACCAATTGCCAGTAGAATCGTTGCC 1113
Query 1194 AAGCAGCATGCAGATGCAATCACCATACTCTGGACCTCCTCAACAGTCTATGCAAGCTTA 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AAGCAGCATGCAGATGCAATCACCATACTCTGGACCTCCTCAACAGTCTATGCAAGCTTA 1173
Query 1254 CGGATACGGTGCTGCACCACCACCACAGGCTCCTCCTCAGCAGACAAAGATGTCTTACAG 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 CGGATACGGTGC---ACCACCACCACAGGCTCCTCCTCAGCAGACAAAGATGTCTTATAT 1230
Query 1314 CCCCCAGACTGGCGATGGGTATCTACCCTCAGGACCTCCTCCTCCTTCCGGGTATGCCAA 1373
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1231 CCCCCAGACGGGCGACGGGTATCTACCCTCAGGACCTCCTCCTCCTGCCGGGTATGCCAA 1290
Query 1374 TGCCATGTATGAAGGTGGGCGAATGCAATACCCACCACCTCAGCCgcagcagcagcagca 1433
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1291 TGCCATGTATGAAGGTGGGCGAATGCAATACCCACCACCTCAGCCGCAGCAGCAACAGCA 1350
Query 1434 gcaAGCCCATTACTTGCAAGGTCCACAAGGTGGTGGATACTCTCCCCAGCCGCACCAGGC 1493
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1351 GCAAGCCCATTACTTGCAAGGTCCACAAGGTGGTGGATACGCTCCCCAGCCGCACCAGTC 1410
Query 1494 AGGTGGCGGTAACATTGGTGCACCACCTGTGTTGAGATCAAAATACGGTGAACTGATAGA 1553
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1411 AGGTGGCGGTAACACTGGTGCACCACCTGTGTTGAGATCAAAATACGGTGAACTTATAGA 1470
Query 1554 GAAGCTAGTGAGCATGGGTTTCAGAGGAGACCATGTCATGGCTGTTATTCAGCGGATGGA 1613
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 1471 GAAGCTAGTGAGCATGGGTTTCAGGGGAGACCATGTGATGGCCGTGATTCAGCGGATGGA 1530
Query 1614 AGAGAGTGGCCAACCCATCGACTTCAACACCCTCCTCGACAGATTGAGTGGGCAGTCCTC 1673
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1531 AGAGAGTGGCCAACCCATCGACTTCAACGCCCTCCTCGACAGATTGAGTGGGCAGTCCTC 1590
Query 1674 AGGAGGACCTCCCAGAGGATGGTGATGCCATGGCTCCCCT-CTACTTGTGTATCTTTCAA 1732
||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||
Sbjct 1591 AGGAGGACCTCCCAGAGGATGGTGAAGCCATA--TCCCCTTCTACTAGTGTATCTTTCAC 1648
Query 1733 AATAAAACTGTGCTTCCTCTTC-CTCCTCCTCTTTGCGTTACTCTATAGAGGCCCTAGTT 1791
|||||||||| |||| |||||| | ||| |||||| | ||||||||||||||||||||||
Sbjct 1649 AATAAAACTGCGCTTTCTCTTCACCCCTTCTCTTTACTTTACTCTATAGAGGCCCTAGTT 1708
Query 1792 TTATTGGGCCCAATAGATTGGGTCTGTTGTGTATTGTT-ATAAGACTCAATTTATATTTC 1850
|||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 1709 TTATTGGGCCCAATAGATTGGGTCAGTTGTGTATTGTTTATGGGACTCAATTTATATTTC 1768
Query 1851 TTTAAAAA--GCCTTATTATTTGTGTATGTGTTACT 1884
||||||| ||| ||||||| ||||||||||||||
Sbjct 1769 CTTAAAAAAAGCCGTATTATTGGTGTATGTGTTACT 1804
Score = 113 bits (61), Expect = 4e-24
Identities = 80/88 (91%), Gaps = 5/88 (6%)
Strand=Plus/Plus
Query 39 aaaacaaaCGttttt-t--t-CCTGCTTGCTTC-TCTCTTTGCTTGCGTTTTCTCAAAGG 93
|||| |||||||||| | | | |||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAAAAAAACGTTTTTCTCCTGCTTGCTTGCTTCTTCTCTTTGCTTGCGTTTTCTCAAAGG 60
Query 94 TTCGAAGAAAACGAAGAACCACGCTTTT 121
||||||||||||||||||||| ||||||
Sbjct 61 TTCGAAGAAAACGAAGAACCAAGCTTTT 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73018999665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5