BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28390.1 Length=1444 Score E Sequences producing significant alignments: (Bits) Value Ahg491934 jgi|Araly1|491934|fgenesh2_kg.7__1367__AT4G28390.1 2119 0.0 > Ahg491934 jgi|Araly1|491934|fgenesh2_kg.7__1367__AT4G28390.1 Length=1389 Score = 2119 bits (1147), Expect = 0.0 Identities = 1286/1351 (95%), Gaps = 17/1351 (1%) Strand=Plus/Plus Query 1 ATGTAGAAACCTACTCTTCTCGCAATTT-TCCACAGctctctctctctctctcGTTAACG 59 |||||||| |||||||||||||| |||| |||| || |||||||| | |||| |||| Sbjct 1 ATGTAGAACCCTACTCTTCTCGC-ATTTGTCCAGAG----CTCTCTCT-T-TCGTAAACG 53 Query 60 CTTCGGCGAAAAATCCACGAGTCAGCTTTTACTGA-TTTGTAC-A-AAAAATGGATGGAT 116 || |||||||||||| |||| |||||||||||||| ||| ||| | |||||||||||||| Sbjct 54 CTCCGGCGAAAAATCTACGAATCAGCTTTTACTGAGTTT-TACTACAAAAATGGATGGAT 112 Query 117 CAAAGCATCCATCAGTCTTTCAGAAGCTACATGGACAATCTTACTTGATCAATAGACTTT 176 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 113 CAAAGCATCCATCAGTGTTTCAGAAGCTACATGGACAATCTTACTTGATTAATAGACTTT 172 Query 177 CTCCGAGTGTGCAAGCTCGTGGTTACTGTGTCTCTGGTGCTTATGTCAATGGAGGTTTGC 236 |||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 173 CTCCGATTGAGCAAACTCGTGATTACGGTGTCTCTGGTGCTTATGTCAATGGAGGTTTGC 232 Query 237 AGAGTCTATTGCAGCCAACTAGCCATGGCGTTGGCTCGTCTCTTATA-C-C-TCATGGTT 293 |||||||||| ||| |||||||||||||| ||||||| ||||||||| | | |||||||| Sbjct 233 AGAGTCTATTTCAGTCAACTAGCCATGGCATTGGCTCTTCTCTTATACCGCATCATGGTT 292 Query 294 CATTTCCTGTATTAGCTCACGCTCCTAGTGAGAAAACTGGTACTGGTTTCTTGATCGATT 353 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 293 CATTTCCTGTATTAGCTCAAGCTCCTAGTGAGAAAACTGGGACTGGTTTCTTGATCGATT 352 Query 354 TCCTTATGGGAGGAGTCTCAGCTGCTGTTTCGAAGACGGCAGCCGCGCCTATAGAGCGTG 413 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 353 TCCTTATGGGAGGAGTCTCAGCTGCTGTTTCGAAGACGGCAGCAGCGCCGATAGAGCGTG 412 Query 414 TGAAGCTCTTGATTCAGAATCAAGATGAAATGATCAAAGCTGGGCGTCTCTCTGAGCCAT 473 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 TTAAGCTCTTGATTCAGAATCAAGATGAAATGATCAAAGCTGGGCGTCTCTCTGAGCCAT 472 Query 474 ATAAAGGAATCAGTGATTGTTTT-GCTCGAACAGTCAAAGACGAAGGAATGCTTGCTCTT 532 | ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 473 ACAAAGGAATCAGTGATTGTTTTGGC-CGAACAGTCAAAGACGAAGGAATGATTGCTCTT 531 Query 533 TGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTTTAAACTTTGCG 592 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 TGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTTTAAACTTTGCT 591 Query 593 TTCAAAGATTACTTCAAGAGGCTGTTTAACTTCAAGAAAGAAAAAGATGGCTACTGGAAG 652 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TTCAAAGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGAAAAAGATGGCTACTGGAAG 651 Query 653 TGGTTTGCAGGGAACCTGGCGTCTGGTGGTGCAGCTGGTGCATCATCTCTGCTTTTTGTG 712 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 652 TGGTTTGCTGGGAACCTGGCGTCTGGTGGTGCAGCTGGTGCATCGTCTCTGCTTTTTGTG 711 Query 713 TACTCTTTGGATTACGCTCGTACCCGTTTAGCCAATGATGCGAAGGCGGCCAAGAAAGGT 772 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 712 TACTCTTTGGATTACGCTCGTACCCGTTTGGCCAATGATGCGAAGGCGGCCAAGAAAGGT 771 Query 773 GGTCAGCGGCAGTTTAATGGCATGGTCGACGTGTACAAGAAGACTATAGCCTCTGATGGC 832 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 772 GGTCAGAGGCAGTTTAATGGCATGGTCGACGTGTACAAGAAGACCATAGCCTCTGATGGC 831 Query 833 ATTGTCGGGCTTTACCGTGGTTTCAACATCTCATGCGTTGGAATTGTCGTGTACCGGGGG 892 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| Sbjct 832 ATTGTCGGGCTTTACCGTGGTTTCAACATCTCATGTGTTGGAATTGTCGTGTATCGTGGG 891 Query 893 CTTTACTTTGGATTGTATGATTCCTTGAAGCCTGTGGTTCTAGTTGATGGTCTCCAGGAT 952 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 892 CTTTACTTTGGATTGTATGATTCCTTGAAGCCTGTGGTTTTAGTTGATGGTCTCCAGGAT 951 Query 953 AGCTTCCTTGCTAGTTTCTTACTGGGATGGGGAATCACCATTGGAGCTGGATTGGCGTCT 1012 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 952 AGCTTCCTTGCGAGTTTCTTACTGGGATGGGGAATCACCATTGGAGCTGGACTGGCGTCT 1011 Query 1013 TACCCAATTGACACGGTTCGCAGAAGAATGATGATGACGTCAGGTGAAGCAGTGAAGTAC 1072 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1012 TACCCAATTGACACGGTGCGCAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTAC 1071 Query 1073 AAGAGCTCTCTTCAGGCCTTCTCTCAGATCGTCAAGAACGAAGGGGCCAAGTCACTCTTC 1132 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1072 AAGAGCTCTCTTCAGGCCTTCTCTCAGATCGTCAAGAAAGAAGGGGCCAAGTCACTCTTC 1131 Query 1133 AAGGGTGCAGGTGCCAACATCCTTCGTGCGGTTGCAGGCGCTGGTGTACTGGCCGGCTAT 1192 ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 1132 AAGGGTGCAGGTGCCAACATCCTCCGTGCCGTTGCAGGCGCTGGTGTACTCGCCGGCTAT 1191 Query 1193 GACAAGCTCCAGCTCATTGTGTTGGGTAAGAAGTATGGCTCTGGTGGTGGCTAAACGATG 1252 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1192 GACAAACTTCAGCTCATTGTGTTGGGCAAGAAGTATGGCTCTGGTGGTGGCTAAACTATG 1251 Query 1253 AGGATGATGAAAGAATAGCCCTTGAGGTCTGTGAATGAATAAAGCAGTGTGTCCGTTCGT 1312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 AGGATGATGAAAGAATAGCCCTTGAGGTCTGTGAATGAATAAAGCAGTGTGTCCGTTCGT 1311 Query 1313 ATAAATGTTGCTTTTAGAATATAGAGTGTCT 1343 |||||||||||||||||||||| |||||||| Sbjct 1312 ATAAATGTTGCTTTTAGAATATTGAGTGTCT 1342 Score = 73.1 bits (39), Expect = 5e-12 Identities = 50/55 (91%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 1369 AGT-TCTATACTTCTATGACTTTTGTTGACAAAAGAATAAATACAAAGAAAACCA 1422 ||| ||| || ||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1336 AGTGTCT-TAGTTCTATGACGTTTCTTGACAAAAGAATAAATACAAAGAAAACCA 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54011967410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5