BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28480.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491921 jgi|Araly1|491921|fgenesh2_kg.7__1354__AT4G28480.1 2207 0.0
Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1 806 0.0
Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2 375 4e-103
Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1 213 3e-54
> Ahg491921 jgi|Araly1|491921|fgenesh2_kg.7__1354__AT4G28480.1
Length=1466
Score = 2207 bits (1195), Expect = 0.0
Identities = 1408/1503 (94%), Gaps = 46/1503 (3%)
Strand=Plus/Plus
Query 1 GATAATaaaagaag--aaaaggaaaagaaatggagaagggaagaggcaagatg-gcaaag 57
|||||||||||||| |||||| ||| |||||||||||||||||||||||| | | |||
Sbjct 1 GATAATAAAAGAAGAAAAAAGG-AAACAAATGGAGAAGGGAAGAGGCAAGA-GTACCAAG 58
Query 58 CTGTGATTTAAAACACCGTCACCTCCCCGTCAACGGAGACAAACAAAGATCGTGTTTTCT 117
|||||| || ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 59 CTGTGA-TT-AAA-A----CA-----CCGTCAACGGAGACAAACAAAGATCGTGTTTTCT 106
Query 118 CGAACCTTCCACGAGA---TATACTAAGCCAAAGAAGAAGAAGAGACCTGAG-ACGAACA 173
|||||||||||||||| | ||||||||| | ||| |||||||||| ||| ||||| |
Sbjct 107 CGAACCTTCCACGAGATTCTTTACTAAGCC--A-AAGCAGAAGAGACCAGAGAACGAAGA 163
Query 174 AGAAATCCAGAAATTACCAATTCCttttttttGTTTAATCGAATTCAGgaaaagtgaaga 233
|||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct 164 AGAAATCCAGAAATTACCAATTTC-TTTTTTTGATTAATCGGATTCAGGAAAAGTGAAGA 222
Query 234 aacgaaagagagaagacaaagaagaagaagGTGAGATGGGAGTTGATTATTACAAGGTTT 293
|||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 223 AACGTAAGAGAGAAGAC------GAAGAAGGTGAGATGGGAGTGGATTATTACAAGGTGT 276
Query 294 TACAGGTTGATAGAAGCGCTAACGACGATGACCTTAAGAAAGCTTATAGAAAACTCGCTA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TACAGGTTGATAGAAGCGCTAACGACGATGACCTTAAGAAAGCTTATAGAAAACTCGCTA 336
Query 354 TGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGC 413
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TGAAATGGCATCCCGACAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGC 396
Query 414 AGATCTCTGAGGCCTACGATGTTCTTAGCGATCCTCAAAAGAGAGCTGTATATGATCAAT 473
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 397 AGATCTCTGAAGCCTACGATGTTCTTAGCGATCCTCAAAAGAGAGCGGTATATGATCAAT 456
Query 474 ACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTCCCAATGCTGCTACTAGTGGAGCAT 533
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 457 ACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTCCCAATGCTG---GTGGTGGAGCCT 513
Query 534 CCTACTTCTCAACAGGAGATGGATCTTCGTCTTTCAGATTCAACCCGAGAAGTGCAGATG 593
| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||
Sbjct 514 CATACTTCTCAACAGGAGAAGGACCTTCATCTTTCAGATTCAACCCGAGAAGTGCTGATG 573
Query 594 ATATATTCGCTGAGTTTTTCGGGTTCTCGACCCCGTTTGGTGGCGGTGGTGGTGGCACTG 653
||||||||||||||||||||||||||||||||||| || | ||||||||||| ||
Sbjct 574 ATATATTCGCTGAGTTTTTCGGGTTCTCGACCCCG-TT--T---GGTGGTGGTGG---TG 624
Query 654 GAGGGCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATGCCTCGTTTGGTGAAG 713
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 625 GAGGGCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATACCTCTTTTGGTGAAG 684
Query 714 GAGCAGGTGGAGGAGGAGCTATGcatcatcatcaccatcatcatcatcaCGCTGCAGCTA 773
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 685 GAGCAGGTGGTGGAGGAGCTATGCATCATCATCACCATCATCATCATCACGGTGCAGCTA 744
Query 774 GGAAAGTGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAAGATCTCTACAAAGGAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GGAAAGTGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAAGATCTCTACAAAGGAA 804
Query 834 CCACCAAGAAGATGAAGATCTCCAGGGAGATTGTAGATGTCAGCGGTAAGGCAATGCAAG 893
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 805 CTACCAAGAAGATGAAGATCTCCAGGGAGATTGTAGATGTCAGCGGCAAGGCAATGCAAG 864
Query 894 TGGAAGAGATTCTAACGATTGGAGTGAAACCCGGGTGGAAGAAAGGCACAAAGATCACAT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGGAAGAGATTCTAACGATTGGAGTGAAACCCGGGTGGAAGAAAGGCACAAAGATCACAT 924
Query 954 TCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGGATCTAGTCTTCATCATTG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGGATCTAGTCTTCATCATTG 984
Query 1014 ACGAGAAACCCCATCCAGTGTTTACCCGTGAGGGCAACGACCTGATTGTCACACAGAAAG 1073
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 985 ACGAGAAACCCCATCCAGTGTTTACCCGTGAGGGCAACGACTTGATTGTCACACAGAAAG 1044
Query 1074 TCTCACTAGCTGATGCCTTAACAGGCTACACCGCAAACATAGCGACCCTTGATGGCCGTA 1133
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1045 TCTCACTAGCTGATGCCTTAACAGGCTACACTGCAAACATAACGACCCTTGATGGTCGTA 1104
Query 1134 CACTTACAATCCCGATCACAAATGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAG 1193
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1105 CACTTACAATCCCGATCACAAACGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAG 1164
Query 1194 AGGGAATGCCACTCCAGAAAGATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATA 1253
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1165 AGGGAATGCCACTTCAAAAAGATCAGACGAAGAAAGGGAACTTAAGGATCAAGTTCAATA 1224
Query 1254 TCAAGTTTCCAGCGAGATTAACTGCGGAACAGAAAGCTGGGTTTAAGAAGCTTATTGGGT 1313
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1225 TCAAGTTTCCAGCAAGATTAACTGCAGAACAGAAAGCTGGGTTTAAGAAGCTTATTGGGT 1284
Query 1314 GATGATTAAAGCATCTCTGTCTTGTGATGTGTGGAGATTGGGATAAATTTGGTAATATAC 1373
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1285 GATGATTAAAGCTTCTCTGTCTTATGATGTGTGGAGATTGGGTTAAATTTGGTAATATAC 1344
Query 1374 AATTTATA--GGGAATTATCTCCCTCTTCATTAAATTTCGTGTTGTTAAACAAGTCTTCT 1431
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1345 GATTTATATAGGGAATGCTCTCCCTCTTCATTAA-TTTCGTGTTGTTAAACAAGTCTTCT 1403
Query 1432 TTTTAAAGAATAGTTTTTTCAAGATTTGGTACATGTCCTCCATAAACAAAAATTGAAGAT 1491
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1404 TTTTAAAGAATAGTTCTTTCAAGATTTGGTACATGTCTTCCATAAACAAAAATTGAAGAT 1463
Query 1492 CAC 1494
|||
Sbjct 1464 CAC 1466
> Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1
Length=1449
Score = 806 bits (436), Expect = 0.0
Identities = 880/1085 (81%), Gaps = 67/1085 (6%)
Strand=Plus/Plus
Query 208 TTAATC-GAATTCAGgaaaagtgaagaaacgaaagagagaagacaaagaagaagaagGT- 265
|||||| ||| ||||||||||||||||| || || |||| || ||||||||||||||
Sbjct 146 TTAATCAGAA-TCAGGAAAAGTGAAGAAGCG-AA-AGAG-AG---AAGAAGAAGAAGGTC 198
Query 266 GAGATGGGAGTTGATTATTACAAGGTTTTACAGGTTGATAG-AAGCGCTAACGACGATGA 324
| ||||||||| ||||| ||||| || | || |||||| | || ||| | |||||||||
Sbjct 199 G-GATGGGAGTGGATTACTACAAAGTCCTCCAAGTTGATCGCAA-CGCCAGCGACGATGA 256
Query 325 CCTTAAGAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCTGATAAGAACCCTAACAA 384
||||||||||||||| | |||||||| |||||||||||||| || || ||||| |||||
Sbjct 257 TCTTAAGAAAGCTTATCGTAAACTCGCCATGAAATGGCATCCCGACAAAAACCCCAACAA 316
Query 385 CAAAAAAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAGGCCTACGATGTTCTTAGCGA 444
|||||||||||| || |||| |||||| || ||||| || || ||||| || || || ||
Sbjct 317 CAAAAAAGACGCCGAAGCTATGTTCAAACAAATCTCCGAAGCTTACGAGGTACTAAGTGA 376
Query 445 TCCTCAAAAGAGAGCTGTATATGATCAATACGGTGAGGAAGGGTTAAAAGGGAATGTGCC 504
|||||| |||| |||||| ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 377 TCCTCAGAAGAAAGCTGTGTATGATCAATATGGTGAAGAAGGTTTGAAAGGGAATGTGCC 436
Query 505 ACCTCCCAATGCTGCTACTAGTGGAGCAT-CCTACTTCTCAACAGGAGATGGAT-CTTCG 562
|||| || | | || || ||||||| | | || ||||| || || ||||| | | ||
Sbjct 437 ACCT-CC-A-GATG---CTGGTGGAGC-TACTTATTTCTCTACCGGGGATGG-TCCAACG 488
Query 563 TCTTTCAGATTCAACCCGAGAAGTGCAGATGATATATTCGCTGAGTTTTTCGGGTTCTCG 622
|| ||| | || |||||||||| ||| ||||||||||| ||||||||||| ||||||||
Sbjct 489 TCCTTCCGGTTTAACCCGAGAAATGCGGATGATATATTTGCTGAGTTTTTTGGGTTCTCT 548
Query 623 ACCCCGTTTGGTGGCGGTGGTGGTGGCACTGGAGG-GCAGAGATTCGCTAGCCGCATGTT 681
| || |||||| |||| ||| || | || || || |||||| ||||| |||||||
Sbjct 549 AGTCCATTTGGT---GGTGCTGGCGGAAGAGGTGGTACA-AGATTCTCTAGCAGCATGTT 604
Query 682 TGGTGATGATATGTATGCCTCGTTT-GGTGAAGGAGCAGGTGGAGGAGGAGCTATGcatc 740
|||||||||||| | ||| || ||| || ||||||| || || || | | || |
Sbjct 605 TGGTGATGATATATTTGCTTC-TTTCGGCGAAGGAG--GG-GGCGG-CG-G---TG-GT- 653
Query 741 atcatcaccatcatcatcatcaCGCTGCAGCTAGGAAAGTGGCTCCTATCGAGAACAAGT 800
| | || || ||||||| || ||||||||| | |||||||||||| || ||||
Sbjct 654 GGC-T---CA--AT--GCATCACGGTGGAGCTAGGAAGGCGGCTCCTATCGAAAATAAGT 705
Query 801 TGCCTTGTAGCCTTGAAGATCTCTACAAAGGAACCACCAAGAAGATGAAGATCTCCAGGG 860
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 706 TGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATGAGGATCTCTAGGG 765
Query 861 AGATTG-TAGATGTCAGCGGTAAGGCAATGCAAGTGGAAGAGATTCTAACGATTGGA-GT 918
|||||| | ||||| || || ||| |||||||||||||||||||| | || ||| || ||
Sbjct 766 AGATTGCT-GATGTTAGTGGCAAGACAATGCAAGTGGAAGAGATTTTGACCATT-GATGT 823
Query 919 GAAACCCGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCC 978
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 824 GAAGCCAGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCAACC 883
Query 979 AGGTGTGATTCCAGCGGATCTAGTCTTCATCATTGACGAGAAACCCCATCCAGTGTTT-A 1037
|||||||||||||||||| |||||||||||||||||||||| || || || || ||| |
Sbjct 884 TGGTGTGATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCACCCGGT-TTTCA 942
Query 1038 CCCGTGAGGGCAACGACCT-GATTGTCACACAGAA-AGTCTCACTAGCTGATGCCTTAAC 1095
| || ||||| |||||||| | | ||||||||||| | ||||||| | ||| ||||| ||
Sbjct 943 CTCGAGAGGGTAACGACCTCG-TAGTCACACAGAAGA-TCTCACTTGTTGAGGCCTTGAC 1000
Query 1096 AGGCTACACCGCAAACAT-AGCGACCCTTGATGGCCGTACACTTACAATCCC-GATCAC- 1152
||||||||| | ||| | | | || |||||||| || | ||| |||||||| | ||||
Sbjct 1001 AGGCTACACAGTGAACCTGA-CTACACTTGATGGTCGAAGACTGACAATCCCAG-TCACC 1058
Query 1153 AAATGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAG-AGGGAATGCCACTCCAGA 1211
||| ||| ||||||| ||||| || || |||||||| |||| | |||||||| | ||||
Sbjct 1059 AAA-GTGGTCCATCCCGAGTACGAGGAAGTGGTTCC-AAAGGAAGGAATGCCGTTGCAGA 1116
Query 1212 AAGATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATATCAAGTTTCC-AGCGAGA 1270
|||| ||||| |||||||| ||||| |||||||| ||||| |||||||| || | | |||
Sbjct 1117 AAGACCAGACTAAGAAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTA-CAAGA 1175
Query 1271 TTAAC 1275
|||||
Sbjct 1176 TTAAC 1180
> Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2
Length=1232
Score = 375 bits (203), Expect = 4e-103
Identities = 425/527 (81%), Gaps = 35/527 (7%)
Strand=Plus/Plus
Query 751 tcatcatcatcaCGCTGCAGCTAGGAAA-GTGGCTCCTATCGAGAACA-AGTTGCCTTGT 808
||||| ||||||| || ||||| |||| | |||||| | || || | |||||||||||
Sbjct 439 TCATC-GCATCACGGTGGAGCTA-GAAAGGCAGCTCCTGTTGA-AAAAGAGTTGCCTTGT 495
Query 809 AGCCTTGAAGATCTCTACAAAGGAACCACCAAGAAGATGAAGATCTCCAGGGAGATTG-T 867
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 496 AGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGGGAGATTGCT 555
Query 868 AGATGTCAGCGGTAAGGCAATGCAAGTGGAAGAGATTCTAAC-GATTGGA-GTGAAACCC 925
| |||| || || | ||||| || |||||||| | || | ||| | ||||||||
Sbjct 556 GG-TGTCTTTGGCCAGACGATGCAGGTACAAGAGATTTTGACTG-TTG-ATGTGAAACCA 612
Query 926 GGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCCAGGTGTG 985
||||||||||| |||||||||||||||||| | | |||||| |||||||| || ||||||
Sbjct 613 GGGTGGAAGAAGGGCACAAAGATCACATTCACGGCGAAAGGAAATGAGCAACCCGGTGTG 672
Query 986 ATTCCAGCGGATCTAGTCTTCATCATTGACGAGAAACCCCATCC-AGTGTTT-ACCCGTG 1043
||| |||||||| ||||||||||||| || ||||| || ||||| | | ||| || || |
Sbjct 673 ATTTCAGCGGATTTAGTCTTCATCATCGATGAGAAGCCTCATCCGA-T-TTTCACTCGAG 730
Query 1044 AGGGCAACGACCT-GATTGTCACACAGAA-AGTCTCACTAGCT-GATGCCTTAACAGGCT 1100
| || |||||||| | | ||||||||||| | ||||| | || || ||||| || ||||
Sbjct 731 ATGGTAACGACCTCG-TAGTCACACAGAATA-TCTCAGTT-CTCGAGGCCTTTACCGGCT 787
Query 1101 ACACCG-CAAACAT-AGCGACCCTTGATGGCCGTACACTTACAATCCC-GATCA-CAAAT 1156
|||||| ||| | | | | || |||||||| || | ||| || ||||| | ||| || |
Sbjct 788 ACACCGTCAACC-TGA-CTACACTTGATGGTCGGAGACTGACCATCCCAG-TCAACAC-T 843
Query 1157 GTGATCCATCCAGAGTA--TGAAGAGGTGGTTCCTAAA-GAGGGAATGCCACTCCAGAAA 1213
||||||||||||||||| |||| || ||||||| ||| || ||||||||| | ||||||
Sbjct 844 GTGATCCATCCAGAGTACGTGAA-AG-TGGTTCC-AAATGAAGGAATGCCATTGCAGAAA 900
Query 1214 GATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATATCAAGTT 1260
|| ||||| |||||||| ||||| | |||||| || || ||||||||
Sbjct 901 GACCAGACTAAGAAAGGCAACTTGACGATCAAATTTAACATCAAGTT 947
> Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1
Length=1255
Score = 213 bits (115), Expect = 3e-54
Identities = 193/230 (84%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 267 AGATGGGAGTTGATTAT-TACAAGGTT-TTACAGGTTGATAGAAGCGCTAACGACGATGA 324
||||||| ||||||| | || |||||| || | |||||| |||| ||||| ||||| ||
Sbjct 88 AGATGGGGGTTGATT-TCTATAAGGTTCTT-GAAGTTGATCGAAGTGCTAATGACGACGA 145
Query 325 CCTTAAGAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCTGATAAGAACCCTAACAA 384
||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 146 GCTTAAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAA 205
Query 385 CAAAAAAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAGGCCTACGATGTTCTT-AGCG 443
||||||| | || || ||||| ||||||||||||||||| || ||||||||| || || |
Sbjct 206 CAAAAAACAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTT-TTGAGTG 264
Query 444 ATCCTCA-AAAGAGAGCTGTATATGATCAATACGGTGAGGAAGGGTTAAA 492
||||||| ||| |||| | || || |||||||| || ||||| |||||
Sbjct 265 ATCCTCAGAAAC-GAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5