BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28610.1 Length=1693 Score E Sequences producing significant alignments: (Bits) Value Ahg491902 jgi|Araly1|491902|fgenesh2_kg.7__1335__AT4G28610.1 2137 0.0 > Ahg491902 jgi|Araly1|491902|fgenesh2_kg.7__1335__AT4G28610.1 Length=1548 Score = 2137 bits (1157), Expect = 0.0 Identities = 1443/1571 (92%), Gaps = 59/1571 (4%) Strand=Plus/Plus Query 147 AGGACAACAATGGAGGCTCGTCCAGTTCATAGATCAGGTTC------G---AG-AG--AC 194 |||||| |||||||||||||||| || || ||||||||||| | || || || Sbjct 1 AGGACAGCAATGGAGGCTCGTCCGGTACAGAGATCAGGTTCGAGAGAGCTCAGTAGTAAC 60 Query 195 CTCACACGCACTTCTTCAATCCCATCTACACAAAAACCTTCACCAGTAGAAGATAGTTTC 254 ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 61 CTCGCACGCACTTCTTCAATCCCATCTACACAAAAACCTTCAGCAGCAGAAGATAGTTTT 120 Query 255 ATGAGATCAGATAACAACAGTCAGTTAATGTCTAGACCA-TTAGGACAAACCTACCATTT 313 || ||| |||| ||||||| |||||||||||| || || ||||||||| |||||||||| Sbjct 121 ATCAGACCAGAGAACAACACTCAGTTAATGTCGAG-GCAGTTAGGACAATCCTACCATTT 179 Query 314 ACTTTCATCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCAT-C--TGG 370 |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 180 ACTTTCCTCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCATCCGGTGG 239 Query 371 TTT-TGC-AACCAATCTCCATTACTCAACTATGGTATCTCATGAGAAACAACAACACTAC 428 ||| | | || ||||||||||||||| |||||||||||||||||| | | ||||| ||| Sbjct 240 TTTCT-CGAA-CAATCTCCATTACTCGACTATGGTATCTCATGAG--A-AGCAACATTAC 294 Query 429 ACAGGAAGCAGCAGTAATAATGCTGTGCAGACACCAAGCAACAACGATAGTGCTTGGTGT 488 ||||||||||||| | |||||| ||||||||| | | |||||||||| |||||||| Sbjct 295 GCAGGAAGCAGCAG---TCATGCTGCGCAGACACC--G-AGCAACGATAGTTCTTGGTGT 348 Query 489 CATGATTCATTGCC---AGGAGGGTTTCTTGACTTCCATG-AAAC--CAACCCGGCGATT 542 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| || ||| Sbjct 349 CATGATTCATTGCCAGGAGGAGGGTTTCTTGATTTCCATGAAAACAACAACCCTGCCATT 408 Query 543 CAAAACAACTGTCAGATTGAGGATGGTGGCATTGCGGCTGCTTTTGATGACATTCAAAAA 602 ||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 409 CAAAACAACAGTCAAATTGAGGATGGTGGCATTGCTGCTGCCTTTGATGACATTCAAAAA 468 Query 603 CGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACTGATGATGATCCTTTGATGTCT 662 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 469 CGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACCGATGAAGATCCTTTGATGTCT 528 Query 663 ACTAACTGGAATGATCTCTTGCTTGAAACAAATTCCAATTCAGATTCAAAGGACCAGAAG 722 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 529 ACTAACTGGAATGATCTCTTGCTTGAAACAAGTTCCAATTCAGATTCAAAGGACCAGAA- 587 Query 723 A-CACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCTCCGTCTGTGGAATT 781 | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 588 ATCACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCGCCGTCTGTGGAATT 647 Query 782 GCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCG 841 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 648 GCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGTAAGGCACGTATGCG 707 Query 842 TTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGA 901 |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 708 TTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAATAGTCTTGGTGGCAGTGA 767 Query 902 AAGAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCA 961 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 768 AAGAGCTACTCCTAAAGGCGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATTTATCA 827 Query 962 TGTTAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC 1021 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 TGTCAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC 887 Query 1022 TGGTTCGCCAGA-AAGGAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAG 1080 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 TGGTTCGCCAGAGAA-GAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAG 946 Query 1081 GTGGGATAGGTATTACAGAGGCTCTACGACTTCAGATGGAAGTACAGAAGCAACTCCATG 1140 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 947 GTGGGATAGGTATTACAGAGGCTCTGCGACTTCAGATGGAAGTACAGAAGCAACTCCATG 1006 Query 1141 AGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGC 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 AGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGC 1066 Query 1201 AAATGATGTTCGAGAAGCAAAACTCTGG-TCTTACCAAAGGGACAGCCTCAACATCAGAT 1259 |||||||||||||||| |||||||| || |||| |||||||||||||||| ||||||||| Sbjct 1067 AAATGATGTTCGAGAAACAAAACTC-GGATCTTGCCAAAGGGACAGCCTCGACATCAGAT 1125 Query 1260 TCCGCAGCCAAATCTGAACAAGAAGACAAGAAGACTGCTGATTCGAAGGAGGTTC-CAGA 1318 |||||||||||||||||||||||||||||||| ||||||||| | |||||| | | || Sbjct 1126 TCCGCAGCCAAATCTGAACAAGAAGACAAGAAAACTGCTGATACAAAGGAGCT-CGCATC 1184 Query 1319 AGAAGAAACCAGGAAATGTGAGGAACTAGAATCTCCACAGCCAAAGCGTCCCAAAATCGA 1378 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1185 AGAAGAAACCAGGAAATGTGAGGAACCAGAATCTCCACAGCCAAAGCGTCCCAAAACCGA 1244 Query 1379 TAATTGAAAGTATTGGTCTTTTGCTGGATAATCTCGGAGTTTCAGAGTT-AACAGTGATA 1437 |||||||||| ||| || |||||||||||||||| |||||||||||||| |||||||| | Sbjct 1245 TAATTGAAAGAATTAGTGTTTTGCTGGATAATCTTGGAGTTTCAGAGTTTAACAGTGAGA 1304 Query 1438 GAGAGA-ACGAGCTCTTATCTTGAGGTTCTTCAGGACTTCTCTCTTTACTGTTTAACTAT 1496 |||||| | |||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1305 GAGAGAGA-GAGCTCTTATCTTGAG---CTTCAGGACTTCTCTCGCTACTGTTTAACTAT 1360 Query 1497 TTTTCTGATGGAAGACTCTC--AACTCAGCTGTGTAGACAAA-CAACAGATCCCCAAGGA 1553 |||||||||||||||||||| |||||||||||||||||||| |||||||||||| || | Sbjct 1361 TTTTCTGATGGAAGACTCTCTCAACTCAGCTGTGTAGACAAAACAACAGATCCCCGAGAA 1420 Query 1554 AGaaacaaaacaaaaataaaaaGTT-AGTTTGGGAGAATCTTCATCATTC-AGTGTAATC 1611 |||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||| Sbjct 1421 AGAAACAAAACAAAAATAAAGAGTTTAGTTTGGGAGAATCTTCATCATTCGAATGTAATC 1480 Query 1612 TAAATGCTTAACTCATCATTAGTTTTACAGCTACAGATTTCTTATGTTAA-TCTTTTTTA 1670 |||||||||||||||| | |||||||| | ||||||||||||||||||| ||||||||| Sbjct 1481 TAAATGCTTAACTCAT--T-AGTTTTACCGATACAGATTTCTTATGTTAAATCTTTTTTA 1537 Query 1671 GAATATCAAAC 1681 |||||| |||| Sbjct 1538 GAATATTAAAC 1548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63496438415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5