BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28640.2
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491899 jgi|Araly1|491899|fgenesh2_kg.7__1332__AT4G28640.1 1663 0.0
Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1 111 8e-24
> Ahg491899 jgi|Araly1|491899|fgenesh2_kg.7__1332__AT4G28640.1
Length=1090
Score = 1663 bits (900), Expect = 0.0
Identities = 1036/1097 (94%), Gaps = 28/1097 (3%)
Strand=Plus/Plus
Query 1 GTGTCTTCTTGTTCATCCTTTGTTTCCCTTTTTCTTTCTCACTGTTTCTGCCTTACTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTCTTCTTGTTCATCCTTTGTTTCCCTTTTTCTTTCTCACTGTTTCTGCCTTACTTAA 60
Query 61 AGTCTCAATCTTTGCTTCAAATTCAACCCATCTCTTTTTCCTCCCTTCCCTCACAATCAA 120
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 61 AGTCTCAATCTTTGCTTCAAATTCAACCCATCTCTTCTTCTTCC-TTCCCTCACAATCAA 119
Query 121 A--A--TCTTAATTCTCAGCTTCTGGTTTTGTCGAAAATGGAAGGCGGTTCCGCTAGTGG 176
| | ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 120 ATCAAATCTCAATTCTCAGCTTCTGGTTT-GTCTTAAATGGAAGGCGGTTCCGCTAGTGG 178
Query 177 ATCGGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAGGATTCTTCTTC 236
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 ATCAGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAAGATTCTTCTTC 238
Query 237 TCCTATAGGGAATGAGCTTGAGCTTGGTCTTACGTTGAGCCTTGGTCGCAAA-GGGTATC 295
|||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||
Sbjct 239 TCCTGTAGGGAATGAGCTCGAGCTTGGTCTTACGTTGAGCCTTGGTC-CAAAAGGGTATC 297
Query 296 GAGATTGTAGGGTTT---ACGCTGATGAttcttcttcttcttcatc---atcttcttctc 349
||||||||||||||| | ||||||||||||||||||||||| || |||||||||||
Sbjct 298 GAGATTGTAGGGTTTCTTATGCTGATGATTCTTCTTCTTCTTCGTCTTCATCTTCTTCTC 357
Query 350 tGAGCAGAGCTAGCGTAATTGCTGGGATCAAGAGGACAGCTGATTCCATGGCTGCAACTA 409
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 TGAGCAGAGCTAGCGTAATTGCTGGGATCAAGAGAACAGCTGATTCCATGGCTGCAACTA 417
Query 410 GTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATGAACAGTATGGTTAACC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATGAACAGTATGGTTAACC 477
Query 470 AAGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGCCGTAAACAAGA 529
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 AGGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGAAGTAAACAAGA 537
Query 530 ATAGAAGTGATTCAACAAAGATGAGAAATTCCATGTTTGTTAAGGTGACTATGGATGGCA 589
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 ATAGAACTGATGCAACAAAGATGAGAAATTCCATGTTTGTTAAAGTGACTATGGATGGCA 597
Query 590 TTCCTATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACA 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCGATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACA 657
Query 650 CTCTAGAGGAAATGTTTCTGAAACCTAAATTAGGTTCACGCACACTAGAAACCGATGGTC 709
|||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 658 CTCTTGAAGAAATGTTTCTGAAACCCAAATTAGGTTCAAGCACACTAGAAACCGATGGTC 717
Query 710 ACATGGAAACACCGGTCAAGATACTACCAGATGGGTCTTCCGGATTAGTACTAACGTATG 769
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACATGGAAACACCGCTCAAGATACTACCAGATGGGTCTTCCGGATTAGTACTAACGTATG 777
Query 770 AAGACAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCGTGGGGGATGTTTATTGGTT 829
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 778 AAGACAAGGAAGGAGATTGGATGCTTGTTGGCGACGTTCCGTGGGGGATGTTTATTGGTT 837
Query 830 CAGTGAGAAGGCTCCGGATAATGAAAACATCGGAGGCTACTGGTAAAG---A--TGATAT 884
| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 838 CCGTGAGAAGGCTCCGGATAATGAAAACATCGGAAGCTACTGGTAAAGCTCAAATGATAT 897
Query 885 TATGAAGCAAATAATAATCTACGAAGAACCCTTTATGTTTGAAGC-AGTAATAAGACAGA 943
|||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||
Sbjct 898 TATGAAGCAAATAATAATCTACGAAGAACCCTTTCTGTTCGAAGCCAGTAATAAGACGGA 957
Query 944 TCACAGATCAAAGAGAAGACAAAAACATTGTAAGAAGcttcttcttcttct-ctc-ccc- 1000
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 958 TCACAGATCAAAGAGAAGACAAAAACATGGTAAGAAGCTTCTTCTTCTTCTTCTCTCCCC 1017
Query 1001 ttt-acagtttcttttttggctctgccatttttcttttAGTTAGTTATATGTTCTCTTTG 1059
||| ||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1018 TTTTACAGTTT-TTTT--GGCTCTGCCAATTTTCTTT-AGTTAGTTATATGTTCTCTTTG 1073
Query 1060 TAAATCACACTTTAAAA 1076
|||||||||||| ||||
Sbjct 1074 TAAATCACACTTCAAAA 1090
> Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1
Length=1356
Score = 111 bits (60), Expect = 8e-24
Identities = 111/136 (82%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 738 AGATGGGTCTTCCGGA-TTAGTACTAACGTATGAAGACAAGGAAGGAGATTGGATGCTTG 796
|||||| || | | || || ||||| || |||||||| ||||||||||||||||||||||
Sbjct 895 AGATGGATCGT-CTGAGTTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTG 953
Query 797 TTGGCGATGTTCCGTGGGGGATGTTTATTGGTTCAGTGAGAAGGCTCCGGATAATGAAAA 856
||||||||||||| ||| | ||||| || ||||||| |||||| ||| | |||||||
Sbjct 954 TTGGCGATGTTCCATGGAGAATGTTCATCACCTCAGTGAAAAGGCTTCGGGTTATGAAAA 1013
Query 857 CATCGGAGGCTACTGG 872
| || || |||| |||
Sbjct 1014 CCTCTGAAGCTAATGG 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5