BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28660.2 Length=890 Score E Sequences producing significant alignments: (Bits) Value Ahg945162 jgi|Araly1|945162|scaffold_701391.1 743 0.0 > Ahg945162 jgi|Araly1|945162|scaffold_701391.1 Length=593 Score = 743 bits (402), Expect = 0.0 Identities = 464/494 (94%), Gaps = 4/494 (1%) Strand=Plus/Plus Query 243 GGCATTGTCTTATCTTCATGCTCTGTTCTTCCCATCAAAAGCTCATCTTTCACTGGATCC 302 |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||| Sbjct 91 GGCATTGTCTTATCTTCATGCTCTCTTCTTCCCATCAAAGGCTCCTCTTTCACTGGCTCC 150 Query 303 CCTGTTTCTCTCCCGCGGGCTCAACCATCATCCCGAACAGCTCTAAGACCGATGAAACCC 362 |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| Sbjct 151 CCTGTTTCTCTCCCGCGGGCTCAACCCTCATCCCGAACAGCTCTGAGACCGAGGAAACCC 210 Query 363 GTCTCTATCACGATGATGGTAAAGCCGGCGCTCCAATTCATCCAAGGGACGGATGAGATG 422 ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| Sbjct 211 GTCTCTATCACGATGATGGTAAAACCGACGCTCCAATTCATTCAAGGGACGGATGAGATG 270 Query 423 ACAATCCCTGATGTTAAGCTGACTCGATCAAGAGACGGAAGC-AACGGAATGGCACTGTT 481 || ||||||||||||||||||||||| ||||||||||| | | |||||||||||||| || Sbjct 271 ACCATCCCTGATGTTAAGCTGACTCGGTCAAGAGACGG-ATCTAACGGAATGGCACTCTT 329 Query 482 CTCTTTCGACCAACCATCCGTTTTCGACTCGAGCGGTGAAGTCGGAGAGATTACAGGATT 541 |||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 330 CTCTTTTGATCAGCCATCGGTTTTCGACTCGAGCGGTGAAGTCGGGGAGATTACAGGATT 389 Query 542 GTACATGATTGATGAGGAAGGTGTGATTCAGTCGACGGATGTGAACGCGAGATTCGTGAA 601 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 390 GTACATGATCGATGAGGAAGGTGTGATTCAGTCGACGGATGTAAACGCGAGATTCGTGAA 449 Query 602 TGGGAAACCGGAAGGGATTGTGGCGAAGCACATAATGCGATCG-CCGAAAGAATGGGACA 660 ||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||| Sbjct 450 TGGGAAACCGGAAGGGATTGTGGCGAAACACATTATGCGAA-GTCCGAAAGAATGGGACA 508 Query 661 GGTTCATGAGGTTTATGGAGCGATACTCGGACCAGAATGGCTTGCAGTTTGTTAAGAAGC 720 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 509 GGTTCATGAGGTTTATGGAGCGATACTCAGACCAGAATGGCTTGCAGTTTGTTAAGAAGC 568 Query 721 AATGAGGTTGGAGA 734 |||||||| ||||| Sbjct 569 AATGAGGTGGGAGA 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32976323205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5