BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28730.1 Length=792 Score E Sequences producing significant alignments: (Bits) Value Ahg491884 jgi|Araly1|491884|fgenesh2_kg.7__1317__AT4G28730.1 1042 0.0 > Ahg491884 jgi|Araly1|491884|fgenesh2_kg.7__1317__AT4G28730.1 Length=725 Score = 1042 bits (564), Expect = 0.0 Identities = 677/729 (93%), Gaps = 17/729 (2%) Strand=Plus/Plus Query 1 ACGTCACGAGACAAATTAGCATAGC-ACGCAa-a-gaagaagaagaagaagaagCTCCAA 57 ||||||||||||||||||||| || | | || | ||||||||||||||||||||||||| Sbjct 1 ACGTCACGAGACAAATTAGCA-CGCAAAG-AAGACGAAGAAGAAGAAGAAGAAGCTCCAA 58 Query 58 GAATCTGTCGCAGAAATCGCCATGGCAGTCACAGCATTTAACACATTGAAACTTGTATCG 117 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 59 GAATCTGTCGCAGAAATCGCCATGGCAGTCACAGCATTTAACCCATTGAAACTTGCATCG 118 Query 118 TCGTCTCTAGATCCGATTCCTTC-A-GTC-TCTTGTTCTTCTTATTCCTTCTCTCTGATA 174 ||||||||||||||||||||||| | || |||| |||||||||||| |||||| ||||| Sbjct 119 TCGTCTCTAGATCCGATTCCTTCAATCTCTTCTTCTTCTTCTTATTCATTCTCTTTGATA 178 Query 175 TATGTCGGATCTCCTTACAAGAGATGTCTAAAGCAGTCATGTTCTGTTCGAGCTATG--- 231 | |||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||| Sbjct 179 TCTGTCGGATCTTCTTTCAAGAGAAGTCTAAAGCAGTCATGTTCTGTTCGAGCCATGTCT 238 Query 232 ACTTCTTCTTCTTCGGCTG---CATCGTCTTCTTCTTCGTCCTTTGGATCGAGAATGGAA 288 |||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| Sbjct 239 TCTTCTTCTTCTTCGGCTGCTTCATCTTCTTCTTCTTCTTCCTTCGGATCGAGAATGGAA 298 Query 289 GAGAGTATTAGGAAAACAGTGACTGAGAACACTGTCGTTATTTACTCCAAAACTTGGTGC 348 ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 299 GAGAGCGTGAGGAAAACAGTGACTGAGAACACTGTCGTTGTTTACTCCAAAACTTGGTGC 358 Query 349 TCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTGTT 408 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 359 TCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTATT 418 Query 409 GAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACT 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACT 478 Query 469 GGGCAACACACTGTTCCTAATGTTTTCGTATGTGGCAAGCACATTGGTGGCTGCACAGAT 528 |||||||||||||||||||||||||| || | |||||||||||||||||||| |||||| Sbjct 479 GGGCAACACACTGTTCCTAATGTTTTTGTCGGAGGCAAGCACATTGGTGGCTGTACAGAT 538 Query 529 ACAGTGAAGCTTAACAGGAAAGGAGATCTGGAACTGATGTTAGCTGAAGCCAACGGTAAA 588 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 539 ACAGTGAAGCTTAACAGGAAAGGAGATCTGGAAGTGATGTTAGCTGAAGCCAACGGTAAA 598 Query 589 AAC-GGTCAGAGTTGAGGAGATGTTGAAACTGGTTCGGAGATTTTTGCATACGGAGCTTG 647 | | |||||| |||||||| || ||||||||||||||||||||| ||||| |||||||| Sbjct 599 A-CTGGTCAGTCTTGAGGAGGTGATGAAACTGGTTCGGAGATTTT-GCATATGGAGCTTG 656 Query 648 GAAAGTTTTCTCATTTTTGTTATTATCATTGTACCTCATTTGAATACAATAATTATAGTT 707 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 657 GAAAGTTTTCTCATTTTCGTTATTATCATTGTACCTCATTTGAATACAATAATCATAGTT 716 Query 708 AATAAATAA 716 ||||||||| Sbjct 717 AATAAATAA 725 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29240277339 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5