BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28740.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945153 jgi|Araly1|945153|scaffold_701382.1 1589 0.0
> Ahg945153 jgi|Araly1|945153|scaffold_701382.1
Length=1031
Score = 1589 bits (860), Expect = 0.0
Identities = 982/1040 (94%), Gaps = 11/1040 (1%)
Strand=Plus/Plus
Query 174 TTGCAGAGAATCTAGCGAGACCAATGGCTACTCTGGTCTCGTCTCAAACTTACATCTACC 233
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGCAGAAAATCTAGCGAGACCAATGGCTACTCTGGTCTCGTCTCAAACTTACATCTACC 60
Query 234 ATTGTCATATTAGTAAACAAGCTCTTTATCAGGCAAAAGAATCATACTCTCATCGTAGAA 293
|||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 61 ATTGTCATATTAGTAAACAAGCTCTTTATCAGACAAAAGAATCATATTCTCCTCGTAGAT 120
Query 294 TTTCCCGTCATAATCACAGAGAAAGACTCGATTTTTCTCATAGAAACCATAGATTGACAA 353
|||| ||||||||||||||||||||||| || |||| || | || |||||||||||
Sbjct 121 TTTCTCGTCATAATCACAGAGAAAGACTTGA-TTTT-TC-T-----CC-TAGATTGACAA 171
Query 354 TAACTAGAAAGCAGCAACCTTTGTCTTTCAACACCGTGTGTTTTGCCGCAGACGAGCCCT 413
|| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 172 TAGCTAGAAAGCACCAACCTTTGTCTTTTAACACCGTGTGTTTTGCTGCAGACGAGCCCT 231
Query 414 CCGAAATCAGTGCTGATGCTAGAATCCGTAGTGAGGTTCTGTCTCCGTTCAGATCAGTCC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CCGAAATCAGTGCTGATGCTAGAATCCGTAGTGAGGTTCTGTCTCCGTTCAGATCAGTCC 291
Query 474 GTATGTTCTTCTACCTCGCCTTTATAGCAAGCGGTTCATTAGGAGGACTAATAGCCACTT 533
|||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||
Sbjct 292 GTATGTTCTTCTACCTGGCCTTCATAGCTAGCGGTTCACTAGGGGGACTAATAGCCACTT 351
Query 534 CTAGGCTCATAGGTGCCCTGGCGAATCCGGCTAGATCAGGTGAAGTTCTTGAGATCGTTA 593
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 352 CCAGGCTCATCGGTGCCCTGGCGAATCCGGCTAGATCAGGCGAAGTTCTTGAGATCGTTA 411
Query 594 AGGGTTTGGGAGTTGACATTGGTGCTGCTTCTCTCTTTGCGTTCCTATACTTCAACGAAA 653
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 412 AGGGTTTGGGAATTGACATTGGTGCTGCTTCTCTCTTTGCGTTCCTCTACTTCAACGAAA 471
Query 654 ACAAGACCAAGAACGCGCAAATGGCTAGGCTCTCGAGGGAAGAGAATCTTGGCAAACTCA 713
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 472 ACAAGACCAAGAACGCGCAAATGGCTAGGCTCTCGAGGGAAGAGAATCTTGCCAAACTCA 531
Query 714 AAATGAGAGTCGAAGAGAACAATAAGGTAATCTCCGTAGGTGATCTGAGAGGGGTTGCTA 773
||||||| |||||||||||||||||| | ||||| ||||||||||| ||||| ||||||
Sbjct 532 AAATGAGGGTCGAAGAGAACAATAAGATTATCTCGGTAGGTGATCTAAGAGGCATTGCTA 591
Query 774 GGCTTGTGATCTGTGCTGGTCCTGCGGAGTTTATTGAAGAAGCGTTTAAGAGAAGTAAAG 833
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 592 GGCTTGTGATCTGCGCTGGTCCTGCGGAGTTTATTGAAGAAGCGTTTAATAGAAGTAAAG 651
Query 834 AGTATACACAAGGGCTCGTGGAGAGAGGTGTGGTTGTGGTGGCTTATGCTACGGATGGGA 893
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGTTTACACAAGGGCTTGTGGAGAGAGGTGTGGTTGTGGTGGCTTATGCTACGGATGGGA 711
Query 894 ATTCACCGGTTTTGGAGTTTGATGAAACTGACATTGCGGATGAAGAAATGAGCCAGAGAA 953
||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 712 ATTCACCGGTTTTGGAGTTTGATGAGACTGACATTGTGGATGAAGAAATAAGTCAGAGAA 771
Query 954 GGAAGAAACTGTGGCGGGTGACTCCGGTTTTTGTCCCGGAATGGGAAAAGTGGTTAAATG 1013
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GGAAGAGATTGTGGCGGGTGACTCCGGTTTTTGTCCCGGAATGGGAAAAGTGGTTAAATG 831
Query 1014 AGCAGAAGAAGCTTGCCAATGTTTCCTCAGACTCTCCAGTGTATTTGTCTCTGCGTTTGG 1073
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 832 AGCAGAAGAAGCTTGCCAATGTTTCTTCAGACTCTCCAGTGTATTTGTCACTGCGTTTGG 891
Query 1074 ATGGGCGTGTAAGGGCAAGTGGAGTGGGTTATCCTCCATGGCAAGCCTTCGTTGCACAGC 1133
| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 892 ACGGGCGTGTAAGGGCAAGTGGAGTGGGTTATCCTCCATGGCAAGCCTTTGTAGCACAAC 951
Query 1134 TTCCTCCGGTTAAGGGAATGTGGACCGGTCTTCTTGACGGTATGGATGGTAGAGTGTAAA 1193
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTCCACCGGTTAAGGGAATCTGGACCGGTCTTCTTGACGGTATGGATGGTAGAGTGTAAA 1011
Query 1194 TACTCT-AATACTT-AGGGA 1211
|||||| ||||||| |||||
Sbjct 1012 TACTCTTAATACTTTAGGGA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5