BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28750.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491882 jgi|Araly1|491882|fgenesh2_kg.7__1315__AT4G28750.1 931 0.0
> Ahg491882 jgi|Araly1|491882|fgenesh2_kg.7__1315__AT4G28750.1
Length=679
Score = 931 bits (504), Expect = 0.0
Identities = 635/694 (91%), Gaps = 26/694 (4%)
Strand=Plus/Plus
Query 11 CAATCAAGAACCACTCTTTCGTGTCGCAATAACAATaagaaagaaag----a-aaaag-- 63
|||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 4 CAATCAAGAACCACTCTTTCGTGTCGGAATAACAATAAGAAAGAAAGAAAAAGAAAAGAA 63
Query 64 -aaaaCCAGAGATGGCGATGACGACAGCATCTACGGTATTTGTTCTACCGGCCAATGTCA 122
||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 64 AAAAACCAGAGATGGCAATGACGACAGCATCTACGGTGTTTGTTCTGCCTGCCAACGTCA 123
Query 123 CCTCGGTCGCCGGCGCTTCGTCGTCCAGGAGCTCCGTGTCTTTCTTGCCGATGAGAAACG 182
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 CCTCGGCCGCCGGCGCTTCGTCGTCCAGGAACTCCGTGTCTTTCTTGCCGATGAGAAACG 183
Query 183 CCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATCCTGCTCCGGCTTCCTCTTCTTCAA 242
||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||
Sbjct 184 CCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATGCGGCTCCGGCAACCTCTTCATCGG 243
Query 243 AAGATTCTCCGGCAGCTGCCGCTGCTCCGGATGGAGCTACTGCCACCAAACCCAAGCCAC 302
||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 244 AAGGTTCTCCGGCAGCTGCCGCTGCTCCGGCTGGAGCTGCTGCCACCAAACCCAAGCCAC 303
Query 303 CACCGATTGGTCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGT 362
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTCCAATTGGCCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGT 363
Query 363 TCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCTAAGACTCGATACCCGGTTG 422
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 364 TCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCGAAGACCCGATACCCGGTTG 423
Query 423 TGGTCCGGTTCGCAAAAGTCAATTACGCCAACATATCGACCAACAACTATGCATTGGATG 482
|||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 424 TGGTTCGGTTCGCGAAAGTGAATTATGCCAACATATCGACCAACAACTATGCATTGGACG 483
Query 483 AGGTCGAAGAAGTTGCAGCTTAAATGGGAGAATTCAAAAACTCTGTGTATTCTATACCGG 542
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 484 AGGTCGAAGAAGTTGCAGCTTAAATGGGAGAATTCAAAAACT--GTGTATTCAATACCGG 541
Query 543 TTTATCCGTTTGTAACTTGACCCAAACCGTATGTACCGCAAAAGTTTACCAATTATTTCT 602
| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 542 TCTATCCGTTTGTAACATGACCCGAACCGTATGTACCG-AAAAGTTTACCAATTATTTCT 600
Query 603 CCTCATCTGAATCTCGAGCCGGTTTTCTTATTCTTTCACAGAATGTGTTTGGAAAATTCA 662
|||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 601 CCTCATCTGAATCTCGAGCCGGTTTTCTTATT-TTT-------TG-------AAAATTCA 645
Query 663 GTTAAAAGTCTCTTTCTACTCATGGTTAGCTCTC 696
|||||||||||||||||| |||||||||||||||
Sbjct 646 GTTAAAAGTCTCTTTCTAATCATGGTTAGCTCTC 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5