BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29010.1 Length=2565 Score E Sequences producing significant alignments: (Bits) Value Ahg491857 jgi|Araly1|491857|fgenesh2_kg.7__1290__AT4G29010.1 3803 0.0 > Ahg491857 jgi|Araly1|491857|fgenesh2_kg.7__1290__AT4G29010.1 Length=2509 Score = 3803 bits (2059), Expect = 0.0 Identities = 2396/2549 (94%), Gaps = 62/2549 (2%) Strand=Plus/Plus Query 11 TGTAAACTCCTGATTTATCAAAGGCCCCATTTTTATC-ACAAAACCAGATCTTTATCCAA 69 |||||||||||||||||||||||| |||| || || | | |||||||||||||||||||| Sbjct 1 TGTAAACTCCTGATTTATCAAAGGGCCCAATTATAACAAAAAAACCAGATCTTTATCCAA 60 Query 70 TTTTGTCACTCACCGAATAATAAAGCTTTCATTTTTCAATCTCAT--CAGAGAGAAA-TT 126 ||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||| | Sbjct 61 TTTTGTCACTCACCGAACGCTAAAGTTTTCATTTTTCAATCTCATCACAGAGAAAAACTA 120 Query 127 A-AGCTATGGCGAAGAAGATTGGAGTAACGATGGAAGTTGGGAACGATGGTGTTGCTGTC 185 | |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 121 ATAGCTATGGCGAAGAAGATTGGAGTGACGATGGATGTTGGGAACGATGGTGTTGCTGTC 180 Query 186 ATCACCATTTCTAACCCTCCTGTTAACTCTTTAGCCAGTCCAATTATTTCTGGGTTGAAG 245 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 ATCACCATTTCTAATCCTCCTGTTAACTCTTTGGCCAGTCCAATTATTTCTGGGTTGAAG 240 Query 246 GAGAAGTTTCGTGACGCCAATCAAAGGAATGATGTTAAGGCCATCGTGTTGATC-GGGAA 304 ||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||| Sbjct 241 GAGAAGTTTCGAGACGCCAATCAAAGGAATGATGTTAAGGCCATCGTATTGA-CTGGGAA 299 Query 305 CAATGGAAGATTTTCGGGTGGTTTTGATATCAATGTCTTTCAGCAAGTTCATAAGACTGG 364 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 CAATGGAAGATTTTCGGGTGGTTTTGATATCAATGTCTTCCAGCAAGTTCATAAGACTGG 359 Query 365 GGATTTATCGCTTATGCCTGAAGTATCTGTTGAGCTTGTGTGTAACCTGATGGAAGACTC 424 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 GGATTTATCGCTTATGCCTGAAGTATCTGTTGAGCTCGTGTGTAACCTGATGGAAGACTC 419 Query 425 CAGGAAGCCGGTTGTTGCTGCAGTTGAAGGATTAGCTCTTGGTGGTGGTTTGGAACTTGC 484 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 420 TAGGAAGCCGCTTGTTGCTGCAGTTGAAGGATTAGCTCTTGGTGGTGGTTTAGAACTGGC 479 Query 485 AATGGCGTGTCATGCCAGAGTTGCTGCTCCGAAAGCTCAATTAGGCTTACCAGAACTGAC 544 ||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||| Sbjct 480 TATGGCGTGTCATGCCCGTGTTGCTGCTCCGAAAGCTCAACTAGGCTTACCAGAATTGAC 539 Query 545 TCTTGGAGTGATTCCTGGTTTTGGAGGAACCCAACGTCTTCCAAGGTTAGTAGGCCTTGC 604 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 540 TCTTGGAGTGATTCCAGGTTTTGGAGGAACCCAACGTCTTCCAAGGCTAGTAGGCCTTGC 599 Query 605 AAAAGCAACGGATATGATACTGCTTTCTAAGTCAATATCCTCAGAAGAGGGGCACAAACT 664 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 600 AAAAGCAACGGATATGATACTGCTTTCGAAGTCAATATCGTCAGAAGAGGGGCAGAAACT 659 Query 665 GGGTCTCATTGATGCCTTGGTGCCACCTGGAGATGTGTTGAGCACATCCAGAAAGTGGGC 724 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 GGGTCTTATTGATGCCTTGGTGCCACCTGGAGATGTGTTGAGCACGTCCAGAAAGTGGGC 719 Query 725 TCTAGACATTGCAGAGGGACGTAAACCCTTTCTGCAG-TCACTGCACAGAACCGACAAAA 783 |||||| |||||||| ||||||||||||||| ||| | ||||||||||| |||||||||| Sbjct 720 TCTAGATATTGCAGATGGACGTAAACCCTTTTTGC-GCTCACTGCACAGGACCGACAAAA 778 Query 784 TTGGTTCTTTATCTGAAGCTCGTGCTATATTGAAGAATTCAAGACAGCTAGCCAAGAAGA 843 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 779 TTGGTTCTTTATCTGAAGCTCGTGCTATATTAAAGAATTCAAGACAGCTAGCCAAGAAGA 838 Query 844 TTGCCCCAAATATGCCTCAGCACCATGCTTGCATTGAGGTGATTGAAGAAGGAATCATCC 903 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 839 TAGCCCCAAATATGCCTCAGCACCATGCTTGCATTGAGGTGATTGAAGAAGGAATCGTCC 898 Query 904 ATGGAGGATACAGTGGGGTTCTCAAGGAAGCAGAAGTTTTCAAGCAACTAGTACTGTCAG 963 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 899 ATGGAGGATATAGTGGGGTTCTTAAGGAAGCAGAAGTTTTCAAGCAACTAGTACTGTCAG 958 Query 964 ACACTGCAAAGGGTCTTGTTCATGTTTTCTTTGCACAACGTGCAACATCAAAAGTGCCTA 1023 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 959 ACACTGCAAAGGGTCTTGTTCATGTTTTCTTCGCACAACGTGCAACATCAAAAGTGCCTA 1018 Query 1024 ATGTAACTGACGTTGGATTGAAACCAAGGCCGATaaaaaaaGTTGCAGTTATTGGTGGCG 1083 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1019 ATGTAACTGACGTTGGATTGAAACCGAGGCCGATAAAAAAAGTTGCAGTTATTGGTGGAG 1078 Query 1084 GTCTGATGGGTTCAGGCATCGCTACGGCTCTACTTCTAAGCAATATAAGAGTTGTGCTCA 1143 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1079 GTCTGATGGGTTCTGGCATCGCTACGGCTCTACTTCTAAGCAATATAAGAGTTGTGCTTA 1138 Query 1144 AAGAAATAAACTCAGAATTCCTTATGAAGGGAATAAAATCAGTTGAAGCAAATATGAAAA 1203 |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| ||| Sbjct 1139 AAGAAATAAATTCAGAATACCTTATGAAGGGAACAAAATCAGTTGAAGCAAATATCAAAG 1198 Query 1204 GCTTGGTATCTAGGGGGAAACTGACACAAGATAAAGCAGGAAAGGCCCTCTCTTTGTTCA 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GCTTGGTATCTAGGGGGAAACTGACACAAGATAAAGCAGGAAAGGCCCTCTCTTTGTTCA 1258 Query 1264 AGGGAGTACTTGATTACACAGAATTCAATGATGTGGACATGGTCATAGAGGCAGTGATTG 1323 |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1259 AGGGAGTACTCGACTACACAGAATTCAAAGATGTGGACATGGTCATAGAGGCAGTGATTG 1318 Query 1324 AAAACATTCAATTGAAACAAAACATATTCAAAGAAATCGAAAAGGTTTGTTCACCCCACT 1383 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1319 AAAACATTCAGTTGAAACAAAACATATTCAAAGAAATCGAAAAGGTTTGTTCACCCCATT 1378 Query 1384 GCATTTTGGCGAGTAATACATCTACTATCGACCTCGATGTAATTGGTGAAAAGACTAACT 1443 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1379 GCATTTTGGCGAGTAATACATCTACTATCGACCTCGACGTAATTGGGGAAAAGACTAACT 1438 Query 1444 CAAAAGATCGCATTGTTGGCGCACATTTCTTCAGTCCGGCCCATCTGATGCCCCTTCTCG 1503 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1439 CAAAAGATCGCATTGTTGGCGCACATTTCTTCAGCCCGGCCCATCTGATGACCCTTCTCG 1498 Query 1504 AGATTGTTCGTTCAAAGAATACTTCTGCTCAGGTGATTCTGGATCTCATGGCGGTTGGAA 1563 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1499 AGATTGTTCGTTCAAAGAATACTTCTGCTCAGGTGATTTTGGATCTCATGGCGGTTGGAA 1558 Query 1564 AGGCCATAAAGAAAGTTCCCGTGGTGGTTGGAAACTGCATAGGCTTTGCAGTGAATAGGA 1623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AGGCCATAAAGAAAGTTCCCGTGGTGGTTGGAAACTGCATAGGCTTTGCAGTGAATAGGA 1618 Query 1624 CATTCTTTCCTTATTCACAAGCTGCACATATGTTGGCCAATCTAGGTGTTGACTTGTTCA 1683 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 CATTCTTTCCGTATACACAAGCTGCACATATGTTGGCCAATCTAGGTGTTGACTTGTTCA 1678 Query 1684 GAATTGACAGCGTTATTACCTCTTTCGGCTTGCCATTGGGCCCTTTCCAGCTTGGTGATT 1743 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1679 GAATTGACAGCGTGATTACCTCTTTCGGCTTGCCGTTGGGCCCTTTCCAGCTTGGTGATT 1738 Query 1744 TGGCTGGACACGGGATTGGATTAGCAGTTGGGCCGATATATGCCAAGGTCTATGGTGACC 1803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1739 TGGCTGGACACGGGATTGGATTAGCAGTTGGGCCGATATATGCCAAGGTCTATGGTGACC 1798 Query 1804 GCATGTTCAGATCTCCAATGACAGAGCTTCTTCTTAAGAGCGGGCGAAATGGAAAAATCA 1863 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1799 GCATGTTCAGATCTCCAATGACCGAGCTTCTTCTTAAGAGCGGGCGAAATGGAAAAATCA 1858 Query 1864 ACGG-AAGAGGATACTATATATACGAAAAGGGAAGCAAACCAAAACCTGATCCATCAGTG 1922 |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1859 ACGGGAA-AGGATACTATATATACGAAAAGGGAAGCAAACCAAAACCCGATCCATCAGTG 1917 Query 1923 CTTTCAATTGTTGAGAAATCAAGGAAACTGACCAATATCATGCCTGGTGGGAAGCCTATA 1982 ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1918 CTTTCAATTGTTGAGGAATCGAGGAAACTGACCAATATAATGCCTGGTGGGAAGCCTATA 1977 Query 1983 TCAGTAACTGATAAAGAAATTGTAGAGATGATCTTATTCCCTGTTGTCAACGAGGCATGC 2042 |||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1978 TCAGTATCTGACAAAGAAATTGTAGAGATGATCTTATTCCCTGTGGTTAACGAGGCATGC 2037 Query 2043 CGCGTCCTAGATGAAGGAGTTGTGATCCGAGCCTCAGACTTGGACATTGCGTCTGTCCTT 2102 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2038 CGTGTCCTAGATGAAGGAGTTGTGATCCGAGCCTCAGACTTGGACATTGCGTCTGTCCTT 2097 Query 2103 GGAATGAGTTTTCCTTCTTACCG-GGGAGGAATTGTTTTCTGGGCAGACACTGTTGGACC 2161 ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| Sbjct 2098 GGAATGAGTTTTCCTTCTTACCGTGGG-GGAATTGTTTTCTGGGCAGACACAGTTGGACC 2156 Query 2162 AAAGTACATATATGAGAGGCTCAAGAAATTGTCGGAGACTTATGGCAGCTTTTTCAAACC 2221 ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 2157 AAAGTACATATATGAAAGGCTCAAGAGATTGTCGGAGACTTACGGCAGCTTTTTCAAACC 2216 Query 2222 ATCGAGGTATCTGGAGGAAAGAGCAATGAATGGAATGCTTTTGAGTGAATCGAAATCGTC 2281 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2217 GTCGAGGTATCTGGAGGAAAGAGCAATGAATGGAATGCTTTTGAGTGAATCGAAATCGTC 2276 Query 2282 GAGGTC-CAAATTGTGAAGCGTTTAATTAAGTATATGCAGAAGGAGAGGCTGAAGGTGTT 2340 |||||| | | |||||||||||||| | | ||| || ||||||||||| Sbjct 2277 GAGGTCTCGA-TTGTGAAGCGTTTA-----G-----G-AGA-GG-----CTGAAGGTGTT 2318 Query 2341 AGTCACTAAATGAAAATAAATCAGTCTCTCTTGTTGTTTCAAAGTTCAAAGTTAAAATGC 2400 ||||| || ||| |||||||||||||||||| ||||||||||||| || || || Sbjct 2319 AGTCA--AA-TGAGAATAAATCAGTCTCTCTTATTGTTTCAAAGTT-AA--TT-----GC 2367 Query 2401 TATTAAGGTGTGGTTGTTGTTAACACTCTTAAAATAAACAA-TTTTCTGCTCTTAATAAA 2459 ||||||||||| |||||||||||||| | |||| |||||| |||| ||||||||||||| Sbjct 2368 TATTAAGGTGT--TTGTTGTTAACACT-T-AAAAGAAACAAATTTTATGCTCTTAATAAA 2423 Query 2460 TGTTTGTAGTGACGTCA--GT--TTC--ATA-A-A-GTTATGATTTGTTCTAGCCAGAGA 2510 |||||||||||| | || || ||| ||| | | ||||||||||||||||| ||| || Sbjct 2424 TGTTTGTAGTGATGCCATTGTCATTCTCATATATAAGTTATGATTTGTTCTAGTCAG-GA 2482 Query 2511 -GAAAA-ATATGAAGAAATTTACATCttt 2537 ||||| ||| || ||||||||||||||| Sbjct 2483 AGAAAATATA-GA-GAAATTTACATCTTT 2509 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96711132055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5