BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29040.1 Length=1612 Score E Sequences producing significant alignments: (Bits) Value Ahg491854 jgi|Araly1|491854|fgenesh2_kg.7__1287__AT4G29040.1 2606 0.0 Ahg480455 jgi|Araly1|480455|fgenesh2_kg.3__3156__AT2G20140.1 1748 0.0 > Ahg491854 jgi|Araly1|491854|fgenesh2_kg.7__1287__AT4G29040.1 Length=1599 Score = 2606 bits (1411), Expect = 0.0 Identities = 1540/1602 (96%), Gaps = 9/1602 (1%) Strand=Plus/Plus Query 8 tacaagagagaaagaaaggaacct--cgaactc-agagaaattgagagaag-agagaaga 63 ||||||||||||| |||| ||||| |||||| |||||||| ||||| || |||||| Sbjct 1 TACAAGAGAGAAACAAAGTAACCTGAAGAACTCAAGAGAAATCGAGAG-AGAAGAGAATC 59 Query 64 aTCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGGAGATCGGAAACCTGATGGT 123 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 60 ATCATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGATCGGAAGCCTGATGGT 119 Query 124 GGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 183 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 120 GGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 179 Query 184 CAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 243 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 239 Query 244 AAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGGATTATTTGTTGATGGAGGAA 303 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 240 AAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTATTTGTTGATGGAGGAA 299 Query 304 GAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAGGAAGATAGA 363 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 300 GAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAAGAAGATAGA 359 Query 364 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 419 Query 424 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGACCTGAGTACTACGTTGGGATTTTG 483 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 420 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGAGTACTATGTTGGGATTTTG 479 Query 484 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 539 Query 544 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 599 Query 604 GAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 663 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 659 Query 664 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 719 Query 724 AAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 783 || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 779 Query 784 AAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 843 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 839 Query 844 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGAC 903 ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 840 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGCTTTTCAGAGTTGCCGATGAC 899 Query 904 CTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGGTATGAC 963 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 900 CTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTATTGGTACCAAGCGGTATGAC 959 Query 964 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1019 Query 1024 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGAGT 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1020 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGACT 1079 Query 1084 CTTGACCCAGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1143 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1139 Query 1144 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1199 Query 1204 GATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAG 1263 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 1200 GATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGTTCTCAGGAGCAGATATCAAG 1259 Query 1264 GCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGGAGCGTCGTATGAAGGTGACACAT 1323 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct 1260 GCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGCGTCGTATGAAGGTGACGCAT 1319 Query 1324 CCTGATTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGCGTCCCTGAA 1383 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1320 CCTGATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGTGTCCCTGAA 1379 Query 1384 GGCCTCTACATGTAAAATTATAATCATATCGTCATCATCGGCTTTCCTCCTCCACACTTT 1443 ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1380 GGCCTTTACATGTAAAATCATAATCATATCGTCATCATCGGCTTTCCTCCTCTACACTTT 1439 Query 1444 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1499 Query 1504 TGATCTCCTCCGGTAAAACAATTCCTCATTTCCATTTAGGATGTCTATTTC-GCATTAAA 1562 ||||||||| | ||||||| |||||||||||||||||||||| ||||||| | |||| Sbjct 1500 TGATCTCCTTCAGTAAAACGATTCCTCATTTCCATTTAGGATACCTATTTCTG-ATTAGC 1558 Query 1563 CTTAACCAACTGAAACCAAGCCCAAATaaaaaaaC-TGATCT 1603 |||||||||||||||||||| ||||| |||| ||| |||||| Sbjct 1559 CTTAACCAACTGAAACCAAGACCAAA-AAAACAACCTGATCT 1599 > Ahg480455 jgi|Araly1|480455|fgenesh2_kg.3__3156__AT2G20140.1 Length=1573 Score = 1748 bits (946), Expect = 0.0 Identities = 1225/1361 (90%), Gaps = 13/1361 (1%) Strand=Plus/Plus Query 48 gagaga-agaga-gaag-aaTCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGG 104 |||||| ||||| |||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 24 GAGAGAGAGAGACGAAGCAAAAATGGGTCAAGGACCATCCGGCGGATTGAATCGGCAAGG 83 Query 105 AGATCGGAAACCTGATGGTGGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACC 164 |||||||||||| |||||||| || ||||||||||||||||| || || || |||||||| Sbjct 84 AGATCGGAAACCAGATGGTGGTGACAAGAAAGAGAAGAAGTTCGAACCAGCCGCACCACC 143 Query 165 GGCTCGTGTAGGGAGGAAGCAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTT-C 223 ||||||||||||||||||||| ||||||| ||||| || || |||||||||||| || | Sbjct 144 TGCTCGTGTAGGGAGGAAGCAACGGAAGCAAAAAGGACCTGAAGCGGCGGCGAGA-TTGC 202 Query 224 CGACGGTGACTCCGTCTACTAAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGG 283 ||||||||||||| |||||||| |||||||| || || || ||| |||| || ||||||| Sbjct 203 CGACGGTGACTCCTTCTACTAAATGTAAGCTTCGATTGCTTAAACTGGAGCGAATCAAGG 262 Query 284 ATTATTTG-TTGATGGAGGAAGAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAA 342 | |||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 263 ACTATTTGCTT-ATGGAGGAAGAGTTTGTGGCGAATCAGGAGAGATTGAAACCTCAGGAA 321 Query 343 GAGAAAGCTGAGGAAGATAGATCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTT 402 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 322 GAGAAAGCTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTT 381 Query 403 GGGAAT-TTGGAAGAG-TTGATTGATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGAC 460 || ||| || |||||| || ||||||||||||||||| |||||||||||||||||||| | Sbjct 382 GGCAATCTT-GAAGAGCTT-ATTGATGAGAATCACGCCATTGTTTCTTCTTCTGTTGGTC 439 Query 461 CTGAGTACTACGTTGGGATTTTGTCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTT 520 ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || | Sbjct 440 CTGAGTATTACGTTGGGATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGTTGCT 499 Query 521 CGATTTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATC 580 | |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 500 CCATTTTGATGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATC 559 Query 581 CAATGGTGTCTGTGATGAAAGTTGAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAG 640 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 560 CAATGGTGTCTGTGATGAAAGTGGAGAAAGCTCCTTTGGAATCATATGCTGACATTGGAG 619 Query 641 GTTTAGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTG 700 ||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| | Sbjct 620 GTTTAGAAGCTCAGATTCAGGAGATCAAGGAAGCTGTTGAGCTACCTTTAACACATCCCG 679 Query 701 AGTTGTATGAAGATATTGGTATTAAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTG 760 |||||||||||||||| |||||||| |||||||| ||||| || |||||||||||||| | Sbjct 680 AGTTGTATGAAGATATCGGTATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAG 739 Query 761 GAACTGGGAAGACATTGCTTGCTAAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGA 820 | |||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 740 GCACTGGGAAGACATTGCTTGCTAAGGCAGTGGCGAATTCTACATCAGCTACTTTCTTGC 799 Query 821 GAGTTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAG 880 | ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 800 GTGTTGTCGGTAGTGAACTGATTCAGAAGTATTTGGGAGATGGTCCCAAGCTTGTGAGGG 859 Query 881 AACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATG 940 | |||||||| ||||| ||||||||||||||||| || || |||||||| |||||||||| Sbjct 860 AGCTTTTCAGGGTTGCCGATGACCTTTCACCATCTATTGTTTTCATAGACGAGATTGATG 919 Query 941 CTGTTGGTACCAAGCGGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTA 1000 ||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| | Sbjct 920 CTGTTGGCACCAAGCGGTATGACGCAAACTCAGGTGGTGAACGTGAAATCCAAAGAACCA 979 Query 1001 TGTTGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCC 1060 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 980 TGTTGGAACTACTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTAATTC 1039 Query 1061 TTGCAACAAACAGAATCGAGAGTCTTGACCCAGCACTGCTTCGACCTGGACGGATTGATA 1120 | || |||||||||||||| ||||||||||| ||||| ||| |||| || ||||| || | Sbjct 1040 TCGCGACAAACAGAATCGAAAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACA 1099 Query 1121 GGAAAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACA 1180 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1100 GGAAAATCGAGTTCCCTCTTCCAGATATCAAAACAAGGAGACGTATCTTCCAGATACACA 1159 Query 1181 CATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACG 1240 |||| ||||||||| | | |||||||| ||| | ||||||||||| ||||||||||||| Sbjct 1160 CATCAAAGATGACTTTGGCCGAAGATGTGAACTTAGAAGAGTTTGTAATGACGAAAGACG 1219 Query 1241 AGTTCTCAGGAGCTGATATAAAGGCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGG 1300 ||||||||||||||||||||||||| ||||| || || |||||||| || ||||| || | Sbjct 1220 AGTTCTCAGGAGCTGATATAAAGGCGATATGTACAGAAGCTGGTCTGCTTGCTCTTAGAG 1279 Query 1301 AGCGTCGTATGAAGGTGACACATCCTG-ATTTCAAGAAAGCAAAGGAGAAGGTTATGTTC 1359 ||||||| ||||| ||||| ||| || | |||||||| || |||||||||||||||||| Sbjct 1280 AGCGTCGAATGAAAGTGACGCATG-TGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTC 1338 Query 1360 AAGAAGAAAGAAGGCGTCCCTGAAGGCCTCTACATGTAAAA 1400 |||||||||||||| ||||||||||| || ||||||| ||| Sbjct 1339 AAGAAGAAAGAAGGAGTCCCTGAAGGTCTTTACATGTGAAA 1379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60411128570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5