BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29110.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491847 jgi|Araly1|491847|fgenesh2_kg.7__1280__AT4G29110.1 1009 0.0
> Ahg491847 jgi|Araly1|491847|fgenesh2_kg.7__1280__AT4G29110.1
Length=844
Score = 1009 bits (546), Expect = 0.0
Identities = 623/660 (94%), Gaps = 6/660 (1%)
Strand=Plus/Plus
Query 29 aaaataaaaaacattctctccaaagaaaatagtaaaaatGGAATCTTCGGTACCAAAGAG 88
|||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 16 AAAA-AAAAAATATTCTCTCCAAAGAAAATAGTAAAAATGGAATCTTCTGTACCAAAGAG 74
Query 89 AGGCTTATACATGGAAATGGAACAAAACGCTCAAGTGGCAGCCAAAAGGCTTTGGAAAGT 148
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 75 AGGCTTATACATGGAAATGGAACAAAACGCTCAAGTCGCAGCCAAGAGGCTTTGGAAAAT 134
Query 149 GGTCCGCATCGTCTTCTGCGTTTTAAAAACCGGTACGGTCAAAAACAAGCTCATGCTTGA 208
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CGTCCGCATAGTCTTCTGCGTTTTAAAAACCGGTACGGTCAAAAACAAGCTCATGCTTGA 194
Query 209 CTTAAACCTAATGCTTAAGAGAGGCAACAAAGCCATAACCAACCTCCGCCGTCGATCTAG 268
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 195 CTTAAACCTAATGCTTAAGAGAGGCAACAAAGCCATCACTAACCTCCGCCGCCGATCAAG 254
Query 269 CTCCACCGGCAGC-CATGACGTCAGCTCCTCCTCACGCGTCCGTGACTACGACCCTTTTG 327
| |||||||| | | ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 255 CCCCACCGGCGGTTC-TGACGTCAGCTCCAC---ACGCGTCCGTGACTACGACCCTTTTG 310
Query 328 CCTTTATCTCCAAACGCAAACGCCGCGTCCACGGCGGTTATGACAACGAAGAAGATGCGG 387
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 311 CCTTTATGTCCAAACGCAAACGCCGCGTCCATGGCGGTTATGACAACGAAGAAGATGCGG 370
Query 388 TGGAGGCAGCGGTCAAGAAAGTTTTTGAGTTGTTAGGAGAGAATGATAAGAAGACGGTGG 447
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 371 TGGAGGCAGCGGTAAAGAAAGTTTTTGAGTTGTTAGGAGAGAATGATAGGAAGACGGTGG 430
Query 448 CGACAGAATCGGCCAGAGAGTCGCCGCTGATAATGTCCCCGGCAGTGAGACAGCTCAGGG 507
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 431 CGGCAGAATCGGCCAGAGAGTCGCCGCTGATAATGTCTCCGGCAGTGAGACAGCTTAGGG 490
Query 508 TGACGGATTCGCCGTTCCCGTTAGACGACGGTGGAGATCACGATCATGTGGTGGACAAAG 567
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct 491 TGACGGATTCGCCGTTCCCGTTAGACGACGGCGGAGATCATGATCATGTGGTGGATAAGG 550
Query 568 CCGCAGAGGAGTTTATAAAGAAGTTTTATAAGAACCTTAAGCTGCAAAAGAAGATGACTA 627
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 551 CCGCAGAGGAGTTTATAAAGAAGTTTTATAAGAACCTTAAGATGCAAAAGAAGATGGCTA 610
Query 628 ACGCATTAGAGTCGCCGTACCACGATGGATGGGTTAGATGATCCAAGCGTTTAGAGACCA 687
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 611 ACACGTTAGAGTCGCCGTACCACGATGGATGGGTTAGATGATCCAAACGTTTAGAGACCA 670
Score = 270 bits (146), Expect = 1e-71
Identities = 172/184 (93%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 719 AGA-ACAAATAAGGGGACAATTGAGAATACATGTATAAATAATGGGGTTACAACTTTTCT 777
||| || |||||||||| |||||| |||| ||||||||||| ||||||| |||||||||
Sbjct 663 AGAGACCAATAAGGGGAAAATTGAAAATATATGTATAAATATTGGGGTTGGAACTTTTCT 722
Query 778 TAGATATATGTTCCATTTGAGTGTTGAATACTTAAATTTGGCTTGTGTTTATTTCGTCGG 837
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 723 TAGATATAT-TTCCATTTGAGTGTTGAATGCTTAAATTTGGCTTGTGTTTATTTCGTCGG 781
Query 838 TAGTTTTGATGTAAACATGGCTATGTATATATTTTCCTATCTTAATGAGAAGAATACTAT 897
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TAGTTT-GATGTAAACTTGGCTATGTATATATTTTCCTATCTTAATGAGAAGAATACTAT 840
Query 898 ATAC 901
||||
Sbjct 841 ATAC 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5