BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29190.1 Length=1436 Score E Sequences producing significant alignments: (Bits) Value Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1 1674 0.0 Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1 654 0.0 > Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1 Length=1307 Score = 1674 bits (906), Expect = 0.0 Identities = 1059/1132 (94%), Gaps = 13/1132 (1%) Strand=Plus/Plus Query 62 TTAAAGAAGATGATGATCGGAGAAACTCGCAGGACTTATCCCACTGTTGAAATACCTCCA 121 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1 TTAAAGAAGATGATGATCGGAGAAACTCGCCGGACTTATCCTACTGTTGAAATACCTCCA 60 Query 122 TGGCC-GGTACTTGAAGAGCTTACAACGTCGGAGtttttttCTCCGGTGATGAATAGTCC 180 ||||| | | | |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 TGGCCAGTTTC-TGAAGAGCTTACGGCGTCGGAGTTTTTTTCTCCGGTGATGAATAGTCC 119 Query 181 AGATTGTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAAC 239 ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 120 AGATTGTAGCATGCTTGAAGCTTTGGCGGCGTTGCAGCGTTATCTT-CCGTCTAACGAAC 178 Query 240 CGGATCCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCA 298 |||||||||| || | |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 179 CGGATCCGGATTC-TGACCCGGATTTATTGGGTCCTGATTCACCAATCGATGCTTACTCA 237 Query 299 TGCGACCATTTCCGTATGTACGATTTCAAAGTCAGGAGGTGTGCTCGTGGCCGGAGTCAT 358 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 238 TGTGACCATTTCCGTATGTACGATTTCAAAGTCCGGAGGTGTGCTCGTGGCCGGAGTCAT 297 Query 359 GATTGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGG 418 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 298 GATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGG 357 Query 419 AAGTACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGT 478 |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 358 AAGTACCATTACTCCGGTACGGCTTGTCCTGATTTTCGCAAAGGTGGTTGCAAGAAAGGT 417 Query 479 GACTCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGT 538 || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 418 GATTCTTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGG 477 Query 539 ACTCAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCA 598 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 478 ACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGGAAAGTTTGTTTCTTTGCTCATTCA 537 Query 599 CCGGATCAGCTT-AGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG 656 ||||||||| || |||||||||| | ||||||||| || | | ||||||||||| |||| Sbjct 538 CCGGATCAG-TTGAGGTTTTTACCGAGTCGGAGCCCCGATCGG-GTTGATTCTTTCGACG 595 Query 657 TTTCGTCTCCGATTCGTGCTAGAGCATTTCAGCTGTCGATTTCTCCGGTTTCTGGTTCGC 716 ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 596 TTTCGTCTCCGATTCGTGCTAGAGCGTTTCAGCTCTCGATTTCGCCGGTTTCTGGTTCGC 655 Query 717 CACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGAT 776 | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 656 CGCCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAATCACTTAGTCGAT 715 Query 777 CTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATT 836 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 716 CTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAACTTACAGTTTAATA 775 Query 837 CGGTAAAATCATTTCCTCGTAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGA 896 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 776 AGGTAAAATCATTTCCTCATAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGA 835 Query 897 TCTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCAGGGAATCTGGATA 956 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 836 TTTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCCGGAAATCTGGATA 895 Query 957 TTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGTGTCGTTGAGTCGGGTCGTG 1016 ||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||||||| Sbjct 896 TTTGGGACTATGGGTTAGAGGAAGAGCCTGTAATGGAGCGGGTCGTTGAGTCGGGTCGTG 955 Query 1017 AGCTACGAGAAAAGATGCGCGAGAAACTGCACAAGGAGAATTGCATGGATCGAGTTG-CC 1075 |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| || Sbjct 956 AGCTACGAGAAAAGATGCGCGAGAAACTACACAAGGAGAATTGCTTGGATCGGGTTGACC 1015 Query 1076 CAGGATCCGGATCAGAATTTGGGTGAGGCTCCTGATGTCGGGTGGGTATCTGACCTGCTC 1135 | ||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| Sbjct 1016 C-GGATCCGGATCAGAAGTCGGGTGATGCTCCTGATGTCGGGTGGGTATCTGACCTGCTG 1074 Query 1136 ATGTAAAGaaaaaaaTCTGACC-GTATTTCGAAGTCTCATTGGCTTTTTTGG 1186 |||||||||| ||| | ||| |||||||||||||||||||| |||||||| Sbjct 1075 ATGTAAAGAATGAAACCCGACTTGTATTTCGAAGTCTCATTGGTTTTTTTGG 1126 Score = 171 bits (92), Expect = 2e-41 Identities = 124/139 (89%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 1282 ATTTTGGGGCCTGATTTTTCTAAGATGATCGTTGTATAGATGTGCCTTAGGGTTTTAATT 1341 |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1172 ATTTTGGGTCCTGATTTTTCTGAGA-AATCGTTGTATAGATGTGCCTTAGGGTTTTAATT 1230 Query 1342 ATGAAATAGTATTA-ATATAATCGTGTTTTATAAGACTATAATGTTAGATTGTAACCACT 1400 ||| || | || || ||||| |||||||||||||| ||||| ||||| || ||||||||| Sbjct 1231 ATGGAACATTAATATATATA-TCGTGTTTTATAAGGCTATATTGTTAAAT-GTAACCACT 1288 Query 1401 TGGTACTAATCTATGAATG 1419 || |||||||||||||||| Sbjct 1289 TGTTACTAATCTATGAATG 1307 Score = 84.2 bits (45), Expect = 2e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 1206 GGAAGGGATCTTAGTGTGTTCATATTATTTTATTTACTAATCTCGTATTTT 1256 ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1126 GGAAGAGATCTTAGTGTGTTCATATTATTTTATTTACTAATTTCGTATTTT 1176 > Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1 Length=1442 Score = 654 bits (354), Expect = 0.0 Identities = 784/985 (80%), Gaps = 56/985 (6%) Strand=Plus/Plus Query 186 GTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAACCGGAT 244 |||| ||| | ||||||||||| | ||| || |||||| || |||||||||||||||||| Sbjct 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTT-CCGTCTAACGAACCGGAT 244 Query 245 CCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCATGCGA 303 ||||| || | | |||||||| | ||||||||||||||| ||||||||||| || || || Sbjct 245 CCGGATTC-TGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGA 303 Query 304 CCATTTCCGTATGTACGA-TTTCAAAGTCAGGA-GGTGTGCTCGTGGCCGGAGTCATGAT 361 ||||| || ||||| || ||| ||||| | || | || |||||||| |||||||||||| Sbjct 304 TCATTTTCGGATGTATGAGTTT-AAAGTGA-GACGTTGCGCTCGTGGTCGGAGTCATGAT 361 Query 362 TGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGGAAG 421 |||||||||||||| || |||||||||||||||||||||||||| | |||||||||||| Sbjct 362 TGGACGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAG 421 Query 422 TACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGTGAC 481 | ||||| || |||||||| |||||||| |||||||||||||| ||||||| ||| ||| Sbjct 422 TTTCATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGAC 481 Query 482 TCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACT 541 | ||||||||| ||||||||||||| ||||||||||||||||| || |||||||| ||| Sbjct 482 GCGTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACT 541 Query 542 CAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCACCG 601 |||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||| Sbjct 542 CAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCG 601 Query 602 GATCAGCTTAGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG-TTT 659 |||||||||||| |||| | || || |||||||| | | |||||||| || |||| ||| Sbjct 602 GATCAGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATC-GTGTTGATTCATTCGACGGTTT 660 Query 660 CGTCTCCGATTCGTGCTAGAGCATTTCAGCTGT-CGATTTCTCCGGTT-TCTGGTTCGCC 717 ||||||||||||| ||||| |||||| | | ||||||| ||| | ||| || || Sbjct 661 -GTCTCCGATTCGT---AGAGCGTTTCAGTT-TACGATTTCGCCG-TCGTCTAACTCCCC 714 Query 718 ACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGATC 777 ||| ||||||| ||| ||||||||| || || ||| | ||| | ||||||||| || Sbjct 715 GCCGGTGAGTCCTCGAGGTGACTCGGACTCGTCGCCG-T--CTC--T-ACTGAGTCGTTC 768 Query 778 TCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATTC 837 ||||| ||| || | ||||||||||||| | || | |||||| | ||| ||| | Sbjct 769 ACTCGGATCTAATTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAA 828 Query 838 GGTAAAATCA-TTTC--C-TCGTA-A-CAATCCTTT---AT--T-CGGAT-T-----CGG 879 || || || |||| | ||||| | |||| | | | ||||| | ||| Sbjct 829 AGTGAAGTCTCTTTCTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGG 888 Query 880 GTCGCCCCGTGGATCGATCTTGGGTCCTGGGTTTC--AGTCTCTGCCTACAACACCGACC 937 |||||| ||||||||| | ||||||||||| |||| || || | || |||||||||||| Sbjct 889 GTCGCCTCGTGGATCGGTTTTGGGTCCTGGTTTTCGGAG-CT-TACCAACAACACCGACC 946 Query 938 CGACCAGGGAATCTGGATATTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGT 997 ||||| ||| | || | |||||||| ||||||||||||||||||| | ||||| || Sbjct 947 CGACCCGGGTTTATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGG 1006 Query 998 GTCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAACTGCA-CAAGGAGAA 1056 |||| ||||||||||||| || |||| || || | |||| ||| | ||| ||||| Sbjct 1007 GTCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTG-AGCAAAGAGAA 1062 Query 1057 TTGCATGGATCGAGTTG-CCCAGGATCCGGATCAGA-ATTTGGGTGAGGCTCCTGATGTC 1114 |||||||| ||| |||| ||| ||||||||||||| | |||||| |||||||||||| Sbjct 1063 TTGCATGGGTCGTGTTGACCC-GGATCCGGATCAGGGAGC-GGGTGATGCTCCTGATGTC 1120 Query 1115 GGGTGGGTATCTGACCTGCTCATGT 1139 |||||||| |||||| || | |||| Sbjct 1121 GGGTGGGTCTCTGACTTGGTTATGT 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53707245450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5