BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29220.1 Length=2068 Score E Sequences producing significant alignments: (Bits) Value Ahg945103 jgi|Araly1|945103|scaffold_701332.1 2370 0.0 Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 547 1e-154 Ahg491836 jgi|Araly1|491836|fgenesh2_kg.7__1269__AT4G29210.1 185 9e-46 > Ahg945103 jgi|Araly1|945103|scaffold_701332.1 Length=1459 Score = 2370 bits (1283), Expect = 0.0 Identities = 1404/1463 (96%), Gaps = 5/1463 (0%) Strand=Plus/Plus Query 353 AGTCTCCGAAAAGGTTGGTTATGTCATCTTCTGTTCCAAACTCGGACCGGAAGATTGTTA 412 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AGTCTCCGACAAGGTTGGTTATGTCATCTTCTGTCCCAAACTCGGACCGGAAGATTGTTA 60 Query 413 CTGGTCCCGCCGGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATC 472 |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 61 CTGGTCCCGCAGGTTATATTCTTGAAGACGTTCCTCATTTCACCGACGACTTCCCTGATC 120 Query 473 ATCCTACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATT 532 | ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 121 ACCCTACATATCCAAATCCATTACAAGACAACGCAGCTTACTCTGTTGTTAGGCAGTATT 180 Query 533 TTGTCGATGAGGATGACACGGTTCCTCAAAAAATAGTAGTTCATCCTGATAGTCCTAGGG 592 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 TCGTCGATGAGGATGACACGGTTCCTCAAAAGATAGTAGTTCATCCTGATAGTCCTAGGG 240 Query 593 GAACGCATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 652 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAACACATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 300 Query 653 TTGCTTGCATTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGA 712 |||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 301 TTGCGTGCATTGTTACGTGTGGCGGTTTGTGTCCCGGGCTTAATACTGTGATCAGAGAGA 360 Query 713 TAGTTTGTGGATTATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTT 772 |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 361 TAGTTTGTGGTTTATCTTACATGTATGGTGTCAAGAGAATCCTTGGAATTGATGGAGGTT 420 Query 773 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATCC 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 421 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATTC 480 Query 833 ATAGAAGCGGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAG 892 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 481 ATAGAAGCGGAGGAACTATCCTCGGGACGTCAAGAGGCGGTCACGACACCACCAAGATAG 540 Query 893 TAGATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 952 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 541 TAGATAGTATTCAAGATCGTGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 600 Query 953 AGAAAGGAGCAGCTGCTATATTCGAGGAGATTAGGAAACGCA-AGCTTAAAGTTGCGGTT 1011 |||||||||| |||||||||||| ||||| |||||||||| | |||||||||||||||| Sbjct 601 AGAAAGGAGCTGCTGCTATATTCAAGGAGGTTAGGAAACG-AGGGCTTAAAGTTGCGGTT 659 Query 1012 GCCGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTT 1071 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||| Sbjct 660 GCCGGAATCCCGAAAACAATCGACAATGATATTCCTATTATCGATAGATCTTTTGGATTT 719 Query 1072 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGC 1131 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 720 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCCCATGTCGAAGCTACAAGC 779 Query 1132 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 839 Query 1192 CATGCCACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCTCCATTTTTT 1251 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 840 TATGCAACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCACCATTTTTT 899 Query 1252 CTTGAAGGCTCGGGCGGGCTTTTTGAATTTATCGATAAACGGTTAAAGGAGAGTGGTCAT 1311 ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 900 CTTGAAGGCCCGGGCGGGCTTTTTGAATTTATTGATAAACGGCTAAAGGAGAGTGGTCAC 959 Query 1312 ATGGTGATTGTAATTGCAGAAGGTGCGGGACAAGATCTGTTGTCTGAAAGCATGAAAGAG 1371 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| Sbjct 960 ATGGTGATTGTAATTGCAGAAGGCGCGGGACAAGATCTGTTGGCTGAAAGCATGGAAGAG 1019 Query 1372 TCCACAACTCTCAAAGATGCCTCTGGAAACAAACTTCTTCAAGACATTGGCCTATGGATC 1431 ||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1020 TCCACAATTCTGAAAGATGCCTCTGGAAACAAACTTCTACAAGACATTGGCCTGTGGATC 1079 Query 1432 TCCCAAAGAATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1491 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TCCCAAAGGATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1139 Query 1492 CCAACCTACATGATACGAGCTGTTCCGAGCAATGCATCAGACAATGTATGCTGCACGCTT 1551 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || Sbjct 1140 CCAACCTACATGATACGGGCTATTCCGAGCAATGCATCAGACAATGTATGCTGCACACTA 1199 Query 1552 TTAGCTCAAAGCGCGGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1611 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TTAGCTCAAAGCGCCGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1259 Query 1612 GTCAATGGAAGACATACTTACATTCCCTTCAATAGGATCACGGAGAAACAGAACAAGGTG 1671 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1260 GTCAATGGAAGACATACTTACATTCCCTTTTATAGGATCACGGAGAAACAGAACAAGGTG 1319 Query 1672 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1379 Query 1732 AAGCAAGCTGACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1791 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 AAGCA-G--GACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1436 Query 1792 TGATCAACACTGTCTACAAAAAC 1814 ||||||| ||||||||||||||| Sbjct 1437 TGATCAAGACTGTCTACAAAAAC 1459 > Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 Length=1799 Score = 547 bits (296), Expect = 1e-154 Identities = 647/815 (79%), Gaps = 30/815 (4%) Strand=Plus/Plus Query 424 GGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTACATAT 483 |||||| |||| ||||||||||||||| ||||||| || |||||| || |||||| ||| Sbjct 264 GGTTATGTTCTAGAAGACGTTCCTCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTAT 323 Query 484 CCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATTTTGTCGATGAG 543 || |||||||| ||||||||| |||| ||||| || || ||||| || ||||| |||| Sbjct 324 CCTAATCCATTGCAAGACAATCCAGCATACTCAGTGGTGAAGCAATACTTTGTTGATGCT 383 Query 544 GATGACACG-GTTCCTCAAAAAATAGTAGTTCATC-CTGATAGTCCTAGGGGAACGCATT 601 ||||| | | ||||||||||| || || ||||| | ||| |||| ||||| | |||| Sbjct 384 GATGATA-GTGTTCCTCAAAAGATCGTTGTTCA-CAAGGATGGTCCAAGGGGGATTCATT 441 Query 602 TCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTCTTGCTTGCA 661 | | || ||||| |||||||||| ||| ||||| || || ||||| | | |||||||| Sbjct 442 TTAGACGAGCAGGGCCACGTCAAAAGGTATACTTCGAATCTGATGAAGGGCATGCTTGCA 501 Query 662 TTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGATAGTTTGTG 721 | ||||| ||||| ||||| ||||| || |||||||| ||||| ||||| |||| || | Sbjct 502 TAGTTACCTGTGGAGGTCTTTGTCCTGGCCTTAATACCGTGATTAGAGAAATAG--TGAG 559 Query 722 GA-T-TATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTTACAGAGG 779 | | |||||||||||||||| || |||||||| || || || ||||| || || ||||| Sbjct 560 CAGTCTATCTTATATGTATGGAGTGAAGAGAATACTGGGAATAGATGGTGGATATAGAGG 619 Query 780 ATTTTACGC-GAGAAACACAATC-CATTTGGACT-TAAAAACAGTGAATGATATCCATAG 836 ||||| || || || || || | ||||||| |||| | || |||||||||||| Sbjct 620 CTTTTATGCTAAG-AATACTGTCTC-CTTGGACTCTAAAGTC-GTAAATGATATCCAT-- 674 Query 837 AAGC--GGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAGTA 894 |||| ||||| |||||||||||||| || |||| |||||| | ||||| |||||||| Sbjct 675 AAGCGTGGAGGGACTATCCTCGGGACCTCGCGAGGTGGTCACGATACCACAAAGATAGTT 734 Query 895 GATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCACAG 954 || || ||||||||||| || || || |||||||| || || || ||||||||| | ||| Sbjct 735 GACAGCATTCAAGATCGAGGAATCAATCAGGTTTACATTATAGGAGGAGATGGAACTCAG 794 Query 955 AAAGGAGCAGCTGCTATATTCGAGGAGATTAGGA-AACGCAAG-CTTAAAGTTGCGGTTG 1012 ||||||| ||| |||||| ||||| |||| || ||| | || |||||||| |||| Sbjct 795 CGAGGAGCATCTGTTATATTTGAGGAAATTA-GACGACG-TGGCCTGAAAGTTGCAGTTG 852 Query 1013 CCGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTTG 1072 ||||||||||||||||| || |||||||| ||| | || || | |||||| ||||||| Sbjct 853 TTGGAATCCCGAAAACAATCGATAATGACATACCTGTGATAGACAAATCTTTTGGGTTTG 912 Query 1073 ACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCT-ACAAGC 1131 ||||||||||||||||||||||||| ||||| || ||||||||||| ||||| | | | Sbjct 913 ACACAGCTGTAGAAGAGGCTCAACGAGCTATTAACGCAGCACATGTGGAAGCGGAGA-G- 970 Query 1132 TTT-GAGAATGGTATTGGTC-TTGTGAAG-TTAATGGGACGGTACAGCGGATTCATTGCA 1188 | | ||||| |||||||| | |||| ||| ||| |||| || |||||||| ||||| || Sbjct 971 TATAGAGAACGGTATTGG-CGTTGTCAAGCTTA-TGGGCCGCTACAGCGGTTTCATAGCG 1028 Query 1189 ATGCATGCCACTCTAGCCAGCCGAGATGTGGACTG 1223 ||| | || |||||||| ||| ||||||||||||| Sbjct 1029 ATGTACGCGACTCTAGCAAGCAGAGATGTGGACTG 1063 > Ahg491836 jgi|Araly1|491836|fgenesh2_kg.7__1269__AT4G29210.1 Length=2122 Score = 185 bits (100), Expect = 9e-46 Identities = 150/173 (87%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 1900 ATAATATTCTTCAAGCAAagagaagagagagagaTAACT-CTTGTGAG---AATAATGTA 1955 ||| ||||| |||||| || || ||| |||||||||||| |||||||| ||||||||| Sbjct 2122 ATAGTATTCATCAAGC-AA-AG-AGA-AGAGAGATAACTCCTTGTGAGAATAATAATGTA 2067 Query 1956 ACAACTCTTGGTTCCAACTACAACTTTGCTTCTGTATATATCCCACGCTGAGTCTTTGAG 2015 | |||||||| ||||||||||||||||||||||||||||||||||| || | ||||| | Sbjct 2066 ATAACTCTTGTTTCCAACTACAACTTTGCTTCTGTATATATCCCACACTCAATCTTTCAA 2007 Query 2016 GCTCATGTAACTTTATTCAAATTTACATGATAGAGAATGGGACTTGAATGAGG 2068 |||||| |||||||| |||| ||||||||||| | |||||||||||||| ||| Sbjct 2006 GCTCATATAACTTTAATCAACTTTACATGATATAAAATGGGACTTGAATAAGG 1954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77780280290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5