BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29490.1
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491808 jgi|Araly1|491808|fgenesh2_kg.7__1241__AT4G29490.1 2501 0.0
Ahg889167 jgi|Araly1|889167|Al_scaffold_0007_1153 104 2e-21
> Ahg491808 jgi|Araly1|491808|fgenesh2_kg.7__1241__AT4G29490.1
Length=1676
Score = 2501 bits (1354), Expect = 0.0
Identities = 1582/1690 (94%), Gaps = 24/1690 (1%)
Strand=Plus/Plus
Query 1 TTTATTATTAGGCCTTGCCGGaaaaacaaaaaaCTAGCTC-ATCGTCGTCATGTCGTCTC 59
||||||||||||||| ||||| |||| ||||||| | | | ||| |||||||||||||||
Sbjct 1 TTTATTATTAGGCCTCGCCGG-AAAA-AAAAAAC-ACCCCAATCATCGTCATGTCGTCTC 57
Query 60 TGTCTCCTCCACCGATTCCAATGGAACTCCACGCCGGTAACCGGAAAAAGTTACTAGAAT 119
||||||||||||||||||| ||||| |||||||||||||||||| ||||| | || || |
Sbjct 58 TGTCTCCTCCACCGATTCCTATGGAGCTCCACGCCGGTAACCGGCAAAAGCTCCTTGATT 117
Query 120 CAATACGCCGTCAGTTATCTAGTTCCAATCGTTCTCTCGATGGATTTGTTCTTCTACAGG 179
||||||||||||| ||||||| ||||||| ||||||| |||||||| ||| |||||||||
Sbjct 118 CAATACGCCGTCACTTATCTAATTCCAATTGTTCTCTAGATGGATTCGTTTTTCTACAGG 177
Query 180 GTGGCGAGGAGAAAAATCGATACTGTACTGATCACACCGAGCTCTTCAGGCAAGAGAGTT 239
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 178 GTGGTGAGGAGAAAAATCGATACTGCACTGATCACACCGAGCTCTTCAGGCAGGAGAGTT 237
Query 240 ATTTTGCTTACTTGTTTGGAGTCAGAGAGCCAGATTTCTATGGAGCTATTGACATTGGAA 299
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 238 ATTTTGCTTACTTGTTTGGTGTCAGAGAGCCTGATTTTTATGGAGCTATTGACGTTGGAA 297
Query 300 GTGGGAAATCTATCCTTTTTATTCCAAGGTTGCCTGATGATTATGCTGTTTGGTT-GGGA 358
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 298 GTGGGAAATCTATCCTTTTTATTCCAAGGTTGCCTGTTGATTATGCTGTCTGGTTAGGG- 356
Query 359 GAGATTAAGCCATTGTCGCATTTTAAGGAAACATATATGGTTGACATGGTTTTCTATGTG 418
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAGATAAAGCCGTTGTCGCATTTTAAGGAAACATATATGGTTGACATGGTTTTCTATGTG 416
Query 419 GATGAGATTATTCAAGTCTTTAATGAACAATTTAAGGGATCTGGAAAGCCCCTGTTGTAT 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 GATGAGATTATTCAAGTCTTTAATGAACAATTTAAGGGATCTGGAAAGCCTCTGTTGTAT 476
Query 479 CTCTTGCATGGTCTTAATACTGACAGCAGTAACTTCTCAAAACCTGCCAGCTTTGAGGGG 538
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCTTGCATGGTCTTAACACCGACAGCAGTAACTTCTCAAAACCTGCCAGCTTTGAGGGG 536
Query 539 ATAGACAAGTTTGAGACTGATTTGACTACTTTACATCCTATTTTGGCGGAATGTCGAGTT 598
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 537 ATAGAAAAGTTTGAGACTGATTTGACTACTTTACATCCTATATTGGCGGAATGTCGAGTT 596
Query 599 ATTAAATCAAGTTTGGAGCTTCAACTAATACAGTTTGCAAATGATATAAGTTCTGAAGCT 658
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 597 ATTAAATCAAGTTTGGAGCTTCAAGTAATACAGTTTGCAAATGATATCAGTTCTGAAGCT 656
Query 659 CATATAGAGGTTATGAGGAAAGTCACACCGGGCATGAAAGAATATCAGATGGAAAGTATG 718
||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 657 CATATAGAGGTTATGAGGAGAGTCACACCTGGCATGAAGGAATATCAGATGGAAAGTATG 716
Query 719 TTTTTGCATCACAGCTACATGTACGGTGGCTGTAGGCATTGCTCGTACACATGCATTTGT 778
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 717 TTTATGCATCACAGCTACATGTACGGTGGCTGTAGGCATTGCTCATACACATGTATTTGT 776
Query 779 GCAACAGGGGATAATAGTGCTGTTCTTCATTATGGGCATGCTGCGGCTCCAAATGATAGG 838
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCAACAGGGGATAACAGTGCTGTTCTTCATTATGGGCATGCTGCGGCTCCAAATGATAGG 836
Query 839 ACTTTTGAAGATGGAGATTTGGCATTGCTTGATATGGGTGCTGAATACCATTTTTATGGG 898
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACTTTCGAAGACGGAGATTTGGCATTGCTTGATATGGGTGCTGAATACCATTTTTATGGG 896
Query 899 TCTGACATAACATGCTCATTCCCCGTCAATGGTAAATTTACAAGTGACCAGAGTCTAATC 958
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 897 TCTGACATAACCTGCTCATTCCCCGTCAATGGTAAATTTACTAGCGACCAGAGTCTAATC 956
Query 959 TACAATGCTGTTCTGGATGCACATAATTCTGTAATCTCTGCGATGAAGCCAGGAGTAAAC 1018
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 957 TACAATGCTGTTCTGGATGCTCATAATTCTGTAATCTCTGCGATGAAACCAGGAGTAAAC 1016
Query 1019 TGGGTGGATATGCACAAGTTAGCTGAAAAAATCATCCTTGAGTCACTGAAGAAGGGGTCC 1078
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1017 TGGGTGGATATGCACAAGTTAGCCGAAAAAATCATCATTGAGTCACTGAAGAAGGGGTCC 1076
Query 1079 ATACTCACTGGTGATGTAGATGACATGATGGTACAGCGCTTGGGTGCTGTTTTCATGCCT 1138
|| |||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1077 ATCCTCACTGGTGATGTGGACGACATGATGGTACAACGCTTAGGTGCTGTTTTCATGCCT 1136
Query 1139 CATGGACTAGGTCACTTCATGGGCATCGACACTCACGATACTGGTGGCTACCCAAAGGGA 1198
|||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||
Sbjct 1137 CATGGACTAGGTCACTTCATGGGCATTGACACACATGATACCGGTGGTTACCCAAAGGGA 1196
Query 1199 GTGGAGAGACCAAAGAAACCTGGATTGAAGTCATTACGAACTGCAAGAGACCTACTTGAA 1258
||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1197 GTGGAGAGACCAAAGGAACCTGGATTGAAGTCATTACGCACAGCAAGAGACCTTCTTGAA 1256
Query 1259 GGAATGGTAATAACGGTGGAACCAGGATGCTATTTCATCAAGGCATTGCTGTTCCCAGCC 1318
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1257 GGAATGGTAATAACGGTGGAACCAGGATGCTATTTCATCAAGGCATTGCTATTCCCAGCC 1316
Query 1319 ATGGCAAACGCAACAACCTCTAAGTTCTTCAACCGTGAAACAATAGAGAGATTCAGAAAT 1378
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATGGAAAACGAAACAACCTCTAAGTTCTTCAACCGTGAAACAATAGAGAGATTCAGAAAC 1376
Query 1379 TTCGGAGGTGTCAGAATCGAAAGCGATTTGGTCGTTACTGCTAATGGCTGCAAGAACATG 1438
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1377 TTCGGAGGTGTCAGAATCGAAAGTGATTTGGTCGTTACTGCGAATGGCTGCAAGAACATG 1436
Query 1439 ACGAATGTTCCACGAGAGACATGGGAGATCGAAGCTGTGATGGCTGGAGGGCCTTGGCCA 1498
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ACGAATGTTCCGCGAAAGACATGGGAGATCGAAGCTGTGATGGCTGGAGGGCCTTGGCCA 1496
Query 1499 CCGACCAAGTGATCGTAGCTACTCTTAGGCAGCTTATGGAAATTAAAAACTTGATAAGTA 1558
|||| ||||||||| || |||||||||| | || ||||||||||||||||||||||| |
Sbjct 1497 CCGAGCAAGTGATCATAACTACTCTTAG-C--CT-ATGGAAATTAAAAACTTGATAAG-A 1551
Query 1559 -AAACTCAATAATA---CAACCTTTATTTTTGTTAATGGGAATAAGGAAAAATTGCCTGT 1614
||||||||||||| |||||||| | |||||| |||||||| || |||||||||
Sbjct 1552 GAAACTCAATAATAATACAACCTTTGT----GTTAATTGGAATAAG-AACTATTGCCTGT 1606
Query 1615 GTTTTACTAATCTTGTAC-A-TGTAG-T-TTATTTTGTTTCAGTGTCTTGTTTGTGTGGT 1670
||||||||||||| |||| | |||| | || ||||||||||||||||||||||||||||
Sbjct 1607 GTTTTACTAATCTAGTACTACTGTACATGTTGTTTTGTTTCAGTGTCTTGTTTGTGTGGT 1666
Query 1671 TGGATATTAA 1680
|||||||||
Sbjct 1667 CGGATATTAA 1676
> Ahg889167 jgi|Araly1|889167|Al_scaffold_0007_1153
Length=1689
Score = 104 bits (56), Expect = 2e-21
Identities = 67/72 (93%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 965 GCTGTTCTGGATGCACATAATTCTGTAATCT-CTGCGATGAAGCCAGGAGTAAACTGGGT 1023
|||||||||||||||||||||||||||| || |||| |||||| |||||||||| |||||
Sbjct 1561 GCTGTTCTGGATGCACATAATTCTGTAA-CTTCTGCAATGAAGTCAGGAGTAAAGTGGGT 1619
Query 1024 GGATATGCACAA 1035
||||||||||||
Sbjct 1620 GGATATGCACAA 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5