BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29540.2 Length=1225 Score E Sequences producing significant alignments: (Bits) Value Ahg491803 jgi|Araly1|491803|fgenesh2_kg.7__1236__AT4G29540.2 1888 0.0 > Ahg491803 jgi|Araly1|491803|fgenesh2_kg.7__1236__AT4G29540.2 Length=1201 Score = 1888 bits (1022), Expect = 0.0 Identities = 1145/1205 (95%), Gaps = 6/1205 (0%) Strand=Plus/Plus Query 1 ATGTATGCAATTGGAAGGGGTGTGGTTTTGGTCGACGTAGCCCGCC-ATGATTTCTCTCC 59 ||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct 1 ATGTATGCAATTGAAAGGGGTTTGGTTTTGGTCTACGTAGCCCGCCAATGATTTCTCTCC 60 Query 60 TTAAAGCTCGCGAGAAGCTTCTCTCTCCTCTCGTCAGTTCCACTATCCGAAGACTCTCCT 119 |||||||||||||||||||||| ||||||||| ||||| || |||||| ||||||||||| Sbjct 61 TTAAAGCTCGCGAGAAGCTTCTTTCTCCTCTCTTCAGTACCTCTATCCAAAGACTCTCCT 120 Query 120 CTAGCCTCTCCTATTCTCGTGAAGATTCGAGGGATTCTGAAGTCTTAATACACCCGAGTG 179 |||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 121 CTAGTCTCTCTTATTCTCGTGAAGATTCAAGAGATTCTGAAGTCTTAATACACCCGAGTG 180 Query 180 CTGTCGTCCACCCAAATGCTGTGATTGGCAAGGGAGTTTCAGTTGGTCCATACTGTACTA 239 |||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| | Sbjct 181 CTGTCGTCCACCCAAACGCTGTGATTGGCAAGGGAGTGTCAGTTGGTCCATTCTGTAC-A 239 Query 240 -TTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATGTCTTT 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 GTTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATATCTTT 299 Query 299 GGAAACACAGAGTTGGGGGAATCTTGTGTTCTCATGACTGGTGCTGTTGTTGGCGATGAG 358 |||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 300 GGAAACACCGAGATGGGGGAATCTTGTGTACTGATGACTGGTGCTGTTGTTGGCGATGAG 359 Query 359 CTTCCTGGCTATACATTCATAGGATGCAATAACATTATCGGTCACCACGCCGTGGTTGGT 418 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 CTTCCTGGCTATACATTCATAGGAAGCAATAACATTATCGGTCACCACGCCGTGGTTGGT 419 Query 419 GTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAAC 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAAC 479 Query 479 AACAATGAAATCAGGGAGTTCTGCTCGATTCACAGGTCATCAAAGCCCAGTGATAAAACG 538 ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 480 AACAATGAAATTAGGGAGTTCTGTTCGATTCACAGGTCATCAAAACCCAGTGATAAAACG 539 Query 539 GTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATT 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATT 599 Query 599 GGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCTGGCCATGTGGTTGTAGAAGAC 658 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 600 GGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCCGGCCATGTGGTTGTACAAGAC 659 Query 659 AATACACACACAGCAGGAGCCTCGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCT 718 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 660 AATACACACACAGCAGGAGCCACGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCT 719 Query 719 TTCATTGGCGGTGGTTCTGTGGTCTCACAAGATGTTCCAAAGTACATGATGGTGGCTGGA 778 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 720 TTCATTGGCGGTGGTTCTGTGGTTTCACAAGATGTTCCAAAGTACATGATGGTGACTGGA 779 Query 779 GAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATG 839 Query 839 TCAGAGATGAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTC 898 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TCAGAGCTAAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTC 899 Query 899 TCCTTAAGTTTTGAAGAGCGTCTCACGGAGCTGGAACAGGACCAAGAGCTGTACAGTGTT 958 |||| ||| ||||||||||||||| | || |||||||| |||||||| ||||||||||| Sbjct 900 CCCTTGAGTCTTGAAGAGCGTCTCATGAAGATGGAACAGAACCAAGAGTTGTACAGTGTT 959 Query 959 CCTGCAGTATCGGCAATGTTGCAGTCAATCCGAGATTCTTTCACTGAAAGTCGCCGTGGG 1018 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 960 CCTGCAGTATCGGCAATGTTGCAATCAATCCGAGATTCTTTCACAGAAAGTCGCCGTGGG 1019 Query 1019 ATATGCAAGTTCAGACAATGGCTCGATTCCACAACTTAGAGACTTAGCTTAGGCATTCAG 1078 ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| || Sbjct 1020 ATATGCAAGTTCAGACAATGGCTGGATTCCACAGCTTAGAGACTTAGCTTACGCATCCAT 1079 Query 1079 TAATCAGCAATGGCTTATTATACCTAATTGCTCAATACCATTTCCTTCACTGGAACTGTA 1138 | |||||||||||| || |||||| |||||||| |||||||| ||||||||| ||||| Sbjct 1080 TGATCAGCAATGGC--AT-ATACCTTATTGCTCAGCACCATTTCTTTCACTGGATCTGTA 1136 Query 1139 ATAGTTTGATATATAGCTTTAACTAAGTGTTGTCAACATTCTGTGGGCACATAACATCCT 1198 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 1137 ATAGTTTGATATATAGCTTTAACCAAGTGTTGTCAACATTTTGTGGGCACATAACATCCT 1196 Query 1199 TAAAA 1203 ||||| Sbjct 1197 TAAAA 1201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45747500400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5