BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29590.1 Length=1229 Score E Sequences producing significant alignments: (Bits) Value Ahg491801 jgi|Araly1|491801|fgenesh2_kg.7__1234__AT4G29590.1 1722 0.0 > Ahg491801 jgi|Araly1|491801|fgenesh2_kg.7__1234__AT4G29590.1 Length=1073 Score = 1722 bits (932), Expect = 0.0 Identities = 1028/1075 (96%), Gaps = 4/1075 (0%) Strand=Plus/Plus Query 1 TGCGACACATCATCTTCATCGTCATGTTCTGTCTTGCAAAGTTCAAACCTTTTTACAAAT 60 |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct 1 TGCGACACATCATCTTCATCGTCATGTTCTCTCCT-AAAAGTTCAAACCTTTTTACAAAT 59 Query 61 CAGACAAAACCCAACAATTAATGAAACAATGTCAAAAACGGCTAATTTTCTCAGCCTGAG 120 ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| || Sbjct 60 CAGACAAAACCCAACAACTATTGAAACAATGTCAAAAACGGCTAATTTCCTCAGCCTCAG 119 Query 121 ATCCAATCCTCTACCTCCGATTTTCTCCTCCACCGGAAACTCTCCTTTCCTCCGAGCTTC 180 |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 120 ATCCAATCCTCTGCCTCCGATTTTCTCCTCCACCGGAGATTCTCCTTTCCTCCGAGCTTC 179 Query 181 CTCGGCTCTGAATCTTCCGACAACTGCTTCGAAACCTTTCCACAGTTGGATTCGTGCTTC 240 ||| ||||||||||||||||| ||||||||||| |||||| |||||||||| ||||| Sbjct 180 CTCTGCTCTGAATCTTCCGACGGCTGCTTCGAAA---TTCCACCGTTGGATTCGCGCTTC 236 Query 241 TTCACGTCGCCGGTTGGTTCTCGGTGGTTTTGGCGGCGCTTCTTTGTGGATGAACAACAA 300 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 237 TTCACGTCGCCGGTTGGTTCTTGGTGGTTTTGGCGGCGCTTCATTGTGGATGAACAACAA 296 Query 301 TATGTCCGGTAAATTTGGCGGTAAATCTTTCATTGCTTCCGCTAGGCAGACCAATCCTTC 360 ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 297 CATGTCCGGTAATTTTGGCGGTAAATCTTTCATTGCGTCCGCTAGGCAGACGAATCCTTC 356 Query 361 TCCCGTCGAACAGGCGTTGAATAAGGTGGATTGGCCAGAGACTTTCCCTTTCAAAGAAGA 420 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 357 TCCGGTCGAACAGGCGTTGAATAAGGTGGATTGGCCCGAGACTTTCCCTTTCAAAGAAGA 416 Query 421 AGATTTCCAGAGATACGATGAGTCGTCTGATTCAACATTCTACGAAGCTCCAAGGTTTGT 480 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 417 AGATTTCCAGAGATTCGATGAGTCGTCTGATTCAACATTCTATGAAGCTCCAAGGTTTGT 476 Query 481 GACACACATTGATGATCCAGCTATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCC 540 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 477 GACACACATTGATGATCCAGCCATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCC 536 Query 541 TCAGAGCGATACTCCAGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTA 600 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TCAGAGCGATACTCCGGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTA 596 Query 601 TCCACCGGGGTATAGGCAAGAACGAATAGTTGGAATGGGTATGAATGAAGAAGAGCTTAA 660 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 597 TCCACCGGGGTATAGGCAGGAACGAATAGTTGGAATGGGTATGAACGAAGAAGAGCTTAA 656 Query 661 GCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATTCAAATCTGCC 720 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 657 GCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATCCAAAGCTGCC 716 Query 721 TTTTGAAGACAATTCTTTCCAAGTTATAACCAATGTGGTAAGTGTGGATTATCTTACAAA 780 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 717 TTTTGAAGACAATTCTTTCCAAGTTATTACCAATGTGGTAAGTGTGGATTATCTTACAAA 776 Query 781 GCCGCTTGAAGTGTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAAT 840 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GCCACTTGAAGTTTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAAT 836 Query 841 GAGCTTCTCGAACCGTTGCTTCTTTACTAAAGCAATCTCGATATGGACATCAACTGGCGA 900 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 837 GAGCTTCTCGAACCGTTGCTTCTTTACGAAAGCAATCTCGATATGGACATCAACTGGCGA 896 Query 901 CGCAGATCATGCTCTCATTGTTGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCC 960 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 897 TGCAGATCATGCTCTCATTGTCGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCC 956 Query 961 TCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTTTACTC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 957 TCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTGTACTC 1016 Query 1021 TAGAAAACTCCCCATGGTTTAAACCTGAGATCCAAGCACATCATGTATACACATA 1075 ||||||||||||||||| ||||| ||||| ||||| ||| ||||||||||||||| Sbjct 1017 TAGAAAACTCCCCATGGCTTAAAGCTGAGGTCCAAACACTTCATGTATACACATA 1071 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45899992068 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5