BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29658.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328749 jgi|Araly1|328749|fgenesh1_pm.C_scaffold_7000976           582    5e-166


> Ahg328749 jgi|Araly1|328749|fgenesh1_pm.C_scaffold_7000976
Length=819

 Score =  582 bits (315),  Expect = 5e-166
 Identities = 365/388 (94%), Gaps = 8/388 (2%)
 Strand=Plus/Plus

Query  1    ATGATCTTTCGAACCAACTACATTGTTATCTTCATTGTTAGTATCTTCATCAGCATGCTT  60
            |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| 
Sbjct  436  ATGATCTTCCGAACCAACTACATTGTCATCTTCATTGTTACTATCTTCATCAGCATGCTC  495

Query  61   TGGCAACCCGTCCACCTTTCCGTCTTTGTTATCTTGATAGTAGCATGGCTATATGTCTAC  120
            |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  496  TGGCAACCCGTCCACCTTTCTGTCTTTTTTATCTTGATAGTAGCATGGCTATATGTCTAC  555

Query  121  TCCCGTGATAATGAACCATGGGTGATATTTGGCAGTGTGATCGATGATTCTACTTTGGTG  180
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  556  TCCCGTGATAATGAACCATGGGTGATATTTGGCAATGTGATCGATGATTCTACTTTGGTG  615

Query  181  CTGGTTTTGTTGGTCCTCACGATCGGTATATTTCTACTAACAGATGTATCCCGCGGTATT  240
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  616  CTGGTTTTGTTGGTCCTCACGATCGGTATATTTCTATTAACAGATGTATCCCGCGGTATT  675

Query  241  GTGATCGGGGTTTTGGCTGGTTTGCCCGTTGTTCTGGTTCATGGCATGTGTAGGAGGAAT  300
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |
Sbjct  676  ATGATCGGGGTTTTGGCTGGTTTGCCCATTGTTCTGGTTCATGGCATGTGTAGGA--A-T  732

Query  301  ACAGAGATGTTGTTCGTCTTGGAAGATGATGAAGAGAAAG-TGGCAATGAACACATCA--  357
            |||||||||||||||||||||||||||||||||||||| | || |||| |||||| ||  
Sbjct  733  ACAGAGATGTTGTTCGTCTTGGAAGATGATGAAGAGAA-GCTGACAATTAACACAGCAAA  791

Query  358  -TCTTCGTCACTTTCTTCTTCCTCTTAA  384
             |||||||| |||||||||||||| |||
Sbjct  792  ATCTTCGTCGCTTTCTTCTTCCTCGTAA  819



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5