BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29658.1 Length=384 Score E Sequences producing significant alignments: (Bits) Value Ahg328749 jgi|Araly1|328749|fgenesh1_pm.C_scaffold_7000976 582 5e-166 > Ahg328749 jgi|Araly1|328749|fgenesh1_pm.C_scaffold_7000976 Length=819 Score = 582 bits (315), Expect = 5e-166 Identities = 365/388 (94%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 1 ATGATCTTTCGAACCAACTACATTGTTATCTTCATTGTTAGTATCTTCATCAGCATGCTT 60 |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 436 ATGATCTTCCGAACCAACTACATTGTCATCTTCATTGTTACTATCTTCATCAGCATGCTC 495 Query 61 TGGCAACCCGTCCACCTTTCCGTCTTTGTTATCTTGATAGTAGCATGGCTATATGTCTAC 120 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 496 TGGCAACCCGTCCACCTTTCTGTCTTTTTTATCTTGATAGTAGCATGGCTATATGTCTAC 555 Query 121 TCCCGTGATAATGAACCATGGGTGATATTTGGCAGTGTGATCGATGATTCTACTTTGGTG 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 556 TCCCGTGATAATGAACCATGGGTGATATTTGGCAATGTGATCGATGATTCTACTTTGGTG 615 Query 181 CTGGTTTTGTTGGTCCTCACGATCGGTATATTTCTACTAACAGATGTATCCCGCGGTATT 240 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 616 CTGGTTTTGTTGGTCCTCACGATCGGTATATTTCTATTAACAGATGTATCCCGCGGTATT 675 Query 241 GTGATCGGGGTTTTGGCTGGTTTGCCCGTTGTTCTGGTTCATGGCATGTGTAGGAGGAAT 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 676 ATGATCGGGGTTTTGGCTGGTTTGCCCATTGTTCTGGTTCATGGCATGTGTAGGA--A-T 732 Query 301 ACAGAGATGTTGTTCGTCTTGGAAGATGATGAAGAGAAAG-TGGCAATGAACACATCA-- 357 |||||||||||||||||||||||||||||||||||||| | || |||| |||||| || Sbjct 733 ACAGAGATGTTGTTCGTCTTGGAAGATGATGAAGAGAA-GCTGACAATTAACACAGCAAA 791 Query 358 -TCTTCGTCACTTTCTTCTTCCTCTTAA 384 |||||||| |||||||||||||| ||| Sbjct 792 ATCTTCGTCGCTTTCTTCTTCCTCGTAA 819 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13736012040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5