BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29950.1
Length=3109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491759 jgi|Araly1|491759|fgenesh2_kg.7__1192__AT4G29950.1 4283 0.0
> Ahg491759 jgi|Araly1|491759|fgenesh2_kg.7__1192__AT4G29950.1
Length=3026
Score = 4283 bits (2319), Expect = 0.0
Identities = 2579/2703 (95%), Gaps = 24/2703 (1%)
Strand=Plus/Plus
Query 414 AAGCTTATGGTTCCATCGGAGATAG-AATCTCTAGGAGACGAATCTGATCGTCGTTTCGC 472
||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 340 AAGCTTATGGTTCCATCGGAGATAGAAAT-TCTGGGAGACGAATCTGATCGTCGTTTCGC 398
Query 473 CAATCTGAGAGGTCTGCGATGGCGCGTGAATCTCGGTGTTCTTCCGTTTCAGTCTTCTTC 532
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CAATCTGAGAGGTGTGCGGTGGCGCGTGAATCTCGGTGTTCTTCCGTTTCAGTCTTCTTC 458
Query 533 CATCGATGATCTTCGTAAAGCTACAGCTGAATCTCGCAGAAGATATGCTGCTTTAAGAAG 592
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 459 TATCGATGATCTTCGCAAAGCAACAGCTGAATCTCGCAGAAGATATGCTGCTTTAAGAAG 518
Query 593 ACGGCTCTTGATTGATCCACATTTGTCTAAAGATGTTCGAAATTCCCCTGATCTCTCTAT 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACGGCTCTTGATAGATCCACATTTGTCTAAAGATGTTCGAAATTCCCCTGATCTCTCTAT 578
Query 653 CGACAATCCCTTATCACAAAACCCTGATAGTACATGGGGTCGGTTCTTCCGTAACGCAGA 712
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 579 CGACAATCCCTTATCACAAAACCCAGATAGTACATGGGGTCGATTCTTTCGTAACGCAGA 638
Query 713 GCTAGAGAAAACATTGGATCAAGACTTGTCTAGGTTATATCCAGAGCATTGGAGTTACTT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 639 GCTAGAGAAAACATTGGATCAAGACTTGTCTAGGTTATATCCAGAGCATTGGACTTACTT 698
Query 773 TCAAGCTCCTGGATGTCAAGGCATGTTAAGGCGTATTCTACTCTTGTGGTGCCTTAAACA 832
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 699 TCAAGCTCCTGGATGTCAAGGCATGTTAAGACGTATTTTACTCTTGTGGTGCCTTAAACA 758
Query 833 TCCCGAGTACGGTTATCGACAAGGGATGCATGAGCTTTTGGCGCCACTGCTTTATGTACT 892
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 759 TCCCGAGTACGGTTATCGACAAGGAATGCATGAGCTTTTGGCGCCTCTGCTTTATGTACT 818
Query 893 TCATGTTGATGTTGATCGTCTCTCTGAAGTGCGTAAAAGTTATGAAGATCATTTCATAGA 952
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TCATGTTGATGTCGATCGTCTCTCTGAAGTGCGTAAAAGTTATGAAGATCATTTCATAGA 878
Query 953 CAGATTCGATGGTTTATCTTTTGAAGAAAGAGATATTACTTACAACTTTGAATTCAAAAA 1012
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 879 CAGATTTGATGGTTTATCTTTCGAAGAAAGAGATATTACTTACAACTTTGAGTTCAAAAA 938
Query 1013 GTTTCTGGAGGATTTCACGGATGATGAGATTGGTGGTATTCAGGGGAATTCAAAGAAAAT 1072
|||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 939 GTTTCTGGAGGATTTCACAGACGATGAGATTGGTGGTATTCAGGGGAACTCAAAAAAAAT 998
Query 1073 AAAGAGTCTAGATGAGCTCGATCCCGAAATCCAGTCTATTGTGAGGTTAAGTGATGCTTA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AAAGAGTCTAGATGAGCTCGATCCCGAAATCCAGTCTATTGTGAGGTTAAGTGATGCTTA 1058
Query 1133 TGGAGCTGAAGGTGAACTCGGGATTGTCTTGTCCGAGAAATTCATGGAGCATGATGCTTA 1192
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGGAGCCGAAGGTGAACTCGGGATTGTCTTGTCCGAGAAATTCATGGAGCATGATGCTTA 1118
Query 1193 CTGCATGTTTGATGCTCTAATGAATGGAGTTCATGGTTGTGTTGCAATGGCTGGATTTTT 1252
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1119 CTGCATGTTTGATGCTCTAATGAATGGAGCTCATGGTTGTGTTGCAATGGCTGGATTTTT 1178
Query 1253 -TGCTTACTCTCCAGCTAGCGGATCCCACACGGGTTTACCTCCCGTTCTTGAAGCTTCCA 1311
| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1179 CT-CTTACTCTCCAGCTAGCGGATCCCATACGGGTTTACCTCCTGTTCTTGAAGCTTCCA 1237
Query 1312 CTGCGTTTTACCATCTTTTATCATTCGTTGATTCGTCTCTCCATAGTCATTTAGTAGAAC 1371
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1238 CTGCGTTTTACCATCTTTTATCGTTCGTTGATTCGTCCCTGCATAGTCATTTAGTAGAAC 1297
Query 1372 TCGGAGTTGAACCTCAGTACTTTGGGCTTCGCTGGTTACGAGTTTTGTTTGGAAGAGAGT 1431
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1298 TCGGAGTTGAACCTCAGTACTTTGGGCTTCGTTGGTTACGAGTTTTGTTTGGAAGAGAGT 1357
Query 1432 TTTTGCTTCAGGATTTATTGATAGTGTGGGATGAGATATTCTCAGCAGATAACACGACGA 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1358 TTTTGCTTCAGGATTTATTGATAGTGTGGGATGAGATATTCTCAGCAGATAATACGACGA 1417
Query 1492 GAACAGATGCGGATAACAATACAAACCAGAGCTACAAGATCTTTGATTCTCCTCGGGGAG 1551
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GAACAGATGAGGATAACAATAGAAACCAGAGCTACAAGATCTTTGATTCTCCTCGGGGAG 1477
Query 1552 CTCTAATCTCGGGAATGGCAGTTTCGATGATATTATGTTTAAGATCATCATTGCTTGCTA 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CTCTAATCTCGGGAATGGCAGTTTCGATGATATTATGTTTAAGATCATCATTGCTTGCTA 1537
Query 1612 CTGAAAACGCAGCTTCTTGTCTCCAGAGACTATTGAATTTCCCAGAGAAGATTGATGTGA 1671
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1538 CTGAAAATGCAGCTTCTTGTCTTCAGAGACTATTGAATTTCCCAGAGAAGATTGATGTGA 1597
Query 1672 GGAAGATAATAGAGAAAGCTAAGTCATTACAAACTTTGGCTTTGGATGATGATGTACGAT 1731
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1598 GGAAGATAATAGAGAAAGCTAAGTCATTACAAACTTTGGCGTTGGATGATGATGTACGAT 1657
Query 1732 CATCAGCTCTATCGATAAATGATGGCTTTGATCAGAGCATCAGTCCAGCAGTACCGGCGA 1791
|||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1658 CATCCGCTCTGTCGATAAACGATGGCTTTGATCAGAGCATCAGTCCACCAGTACCGGCGA 1717
Query 1792 GAACTAACAGTTTTCCTTCCGGATCCACATCTCCTAAATCTCCATTGATAATTACCCCAC 1851
||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 1718 GAACTAACAGTTTTCCTTCGGGATCTACTTCTCCTAAATCTCCATTGATAATTACACCAC 1777
Query 1852 AAAGTTATTGGGAGGATCAATGGAGAGTTCTACACAAAGCCGCCGAGGAAGAGAAAAAGA 1911
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1778 AAAGCTATTGGGAGGATCAATGGAGAGTTCTACACAAAGCCGCCGAGGAAAAGAAACAGA 1837
Query 1912 GTCCTTCTCCAATACAGAAGAAAAAGCCTTGGTTCAGGGTGAAAAGACTTTTCAGAGCAG 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1838 GTCCTTCTCCAATACAGAAGAAAAAGCCTTGGTTCAGGGTGAAAAGACTTTTCAGAACAG 1897
Query 1972 AGTCTGAGCCAACTCATAGCGCCAAGTCACCAAATGGGAAAAGTGAAGTCAAGATATCAT 2031
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 1898 AGTCTGAGCCAACTCAGAGCGCCAAATCATCAAATGGGAAAAGTGAAGTCAAGGTATCAT 1957
Query 2032 CAGTTGCGCGAAACTTGCTTGAAGATTTTAATCGGCAGCTTGTTTCTGAACCTGTGGAAG 2091
||||||| || |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1958 CAGTTGCTCGTAACTTGCTTGAAGATTTTAATCGGCAGCTTATTTCTGAACCTGAGGAAG 2017
Query 2092 CTAATCCAATAGATGTTGTGAACAATGAAGATAGCTCAATTCGAGAAACCGAGGATATAA 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CTAATCCAATAGATGTTGTGAACAATGAAGATAGCTCAATTCGAGAAACCGAGGATATAA 2077
Query 2152 ACACGGATTTTGAAACTGCTGCTGAAGAGAGTATAGTAATGGAGGAGAATTCTTCTGATC 2211
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2078 ACACTGATTTTGAAACAGCTGCTGAAGAGAGTATAGTAATGGAGGAGAATTCATCTGATG 2137
Query 2212 TTTTCTCAGATCCAAACAGTCCTCTCAGAGACTCAAACTACATTGAGAATGATTCGGATA 2271
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2138 TTTTCTCAGATCCAAACAGTCCTCTCAGAGGCTCAAACTACATTGAGAATGATTCGGATA 2197
Query 2272 GCAGTAACGAGTCAAATCTATTTCCTGATGAAACAGTTAAAGATCGAGAAACAAGCGTAG 2331
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2198 GCAGTAACGAGTCAAATCTATTTCCCGATGAAACAGTTAAAGATCAAGAAACAAGCGTAG 2257
Query 2332 TAGATTCGCCTCTTTCCATTTCTTCTCAACCGAGCATGGAGTTTATAGTATCTCTGTCTA 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 2258 TAGATTCGCCTCTTTCCATTTCTTCTCAACCGAGCATGGAGTTTATAGTATCTGTATCCA 2317
Query 2392 AAGATCAAGAAACAAGCGTAGTAGATTCTCCTCTTCCCGTTTCTTCTCAACCGAGCATCG 2451
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2318 AAGATCAAGAAACAAGCGTAGTAGATTCTCCTCTTCCCATTTCTTCTCAACCGAGCATCG 2377
Query 2452 AGTTTCCAGTAACTCAGTCTAATGATGAAGACAACGCTGCAGATAAATCTGTGGCCAATA 2511
||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||
Sbjct 2378 AGTTTCCAGTAACTCAGTCCAATGATGAAGACGATGCTGCAGATAAATCTGTGGCCATTA 2437
Query 2512 TCAAGGAGCGTAGTAAGGTTTTACCAGGAAAATTCCAGTGGTTTTGGAAGTTTGGACGCA 2571
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2438 TCAAGGAGCGTAGTAAGGTTGTACCAGGAAAATTCCAGTGGTTTTGGAAGTTTGGACGCA 2497
Query 2572 ATGTCACTGCTGAGGAGACGAGATGTAATGGAGTCGAAAGTAGTAAGAGCGATTTAGTTT 2631
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2498 ATATCGCTGCTGAGGAGACGAGATGTAATGGTGTCGAAAGTAGTAAGAGCGATTTAGTTT 2557
Query 2632 GCTCTTCTGAGTCACATTCTCTTCCACAGGCTTCATCTTCGGGCAGCAAAGGAGACACAG 2691
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2558 ACTCTTCCGAGTCACATTCTCTTCCACAGGCTTCATCTTCGAGCAGCAAAGGAGACACAG 2617
Query 2692 ACCAGAATGTGATGAATACTCTGAAAAACCTTGGCAATTCGATGCTCGAACACATTCAGG 2751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618 ACCAGAATGTGATGAATACTCTGAAAAACCTTGGCAATTCGATGCTCGAACACATTCAGG 2677
Query 2752 TGATAGAGTCAGTTTTCCAGCAAGAACGAGGTCAGGTTCAGGCAGGACTAATTGAGAATT 2811
|||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 2678 TGATCGAGTCAGTTTTCCAGCAAGAACGAGGTCAGGTTCAGGCAGGATTAATGGAGAACT 2737
Query 2812 TATCTAAGAACAATTTGGTCGAAAAGGGACAAGTCACAGCCATGACTGCTCTGAAGGAGC 2871
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2738 TATCTAAGACCAATTTGGTCGAAAAGGGACAAGTCACAGCCATGACAGCTCTCAAGGAGC 2797
Query 2872 TTCGAAAAATTAGTAATCTTTTGTTGGAAATGTGATGGACCCTTTGATTCTTCTTGTTCT 2931
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2798 TTCGTAAAATTAGTAATCTTTTGTTGGAAATGTGATGGACCCTTTGATTCTTCTTGTTCT 2857
Query 2932 GCTCTCTGtatatatatatatatCTA-AT-TTTTT--GTAAAGTATTGTT-CTTTAGAGC 2986
||||| ||||||||||||||||| || || ||||| ||||||||||||| |||||||||
Sbjct 2858 GCTCTGTGTATATATATATATATATATATATTTTTTTGTAAAGTATTGTTTCTTTAGAGC 2917
Query 2987 ACAGAATAAAATTAA-GGAAACGTTTTCCTTGATCTCTGTCGATTTTGCTGCAGAAATAC 3045
|| |||||||| ||| ||||| ||||| || || | || | | | | | || |||
Sbjct 2918 ACGGAATAAAAATAAAGGAAAAGTTTTTCTCGA-C-CT--C--T---G-T-C-GA--TAC 2963
Query 3046 CAAAACTTTTTGGTTTAGCGGTCATGTGTAAGATGTTATCAATAAAGATACCTAAGTCCT 3105
|||||||||||||||| | | |||||| ||||||||||||||||||||| ||||||| ||
Sbjct 2964 CAAAACTTTTTGGTTTTGTGATCATGTTTAAGATGTTATCAATAAAGATGCCTAAGTTCT 3023
Query 3106 GAG 3108
|||
Sbjct 3024 GAG 3026
Score = 396 bits (214), Expect = 6e-109
Identities = 299/336 (89%), Gaps = 22/336 (7%)
Strand=Plus/Plus
Query 11 CACTTTGCTCCGACAGGTCACCACTTAAG-TTTTGCTTTTCTCACGAAACAAACAAACTT 69
|||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||
Sbjct 1 CACTTTGCTCCGACAGGTCA-C-CTT-AGTTTTTGCTTTTCTCACGAAACAAACAAACTT 57
Query 70 GCTATTTTCTTCTCTTTTTCCAGACCATGAGAAAGCAAAATAATTGAGCTCATTCTCTGC 129
|||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||
Sbjct 58 GCTATTTTCTTCTCTTTTTCCAGACCATGAGAG-GAAAAATAATTGAGCTCCTTCTGTG- 115
Query 130 aaaaaaaaCCATCTTTAATCTCTTCCATTTGGATTCGGAGAGAGAATAA-AAACGAATAG 188
||||| |||||||||||||||||| |||||||||||||||||| || ||| || |
Sbjct 116 AAAAAC--CCATCTTTAATCTCTTCCGCTTGGATTCGGAGAGAGAA-AATAAA-GA---G 168
Query 189 ACAATTTGATTCTCTGTTTCTCTCTCACCTATTTTTATTGTGTTCCGATCTGATCGGATT 248
| | || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 169 A-A-TT-GATTCTCTGTCTCTCTCTCACCTATTTT-ATTGTGTTCCGATCTGATCGGATT 224
Query 249 TAATTATCAGGTTCATTTTCGATTTAAATTTCGATTCttttttttGCTGGTCTCAACGGA 308
| ||| |||||||||||| ||||||||||||||||||||||| | | || || || ||||
Sbjct 225 TTATTTTCAGGTTCATTTGCGATTTAAATTTCGATTCTTTTTCTGG-TG-TC-CA-CGGA 280
Query 309 GAAATTTTCCGGTGACAGCTTAAAGttttgattttt 344
||||||| |||||| |||||||||||||||||||||
Sbjct 281 GAAATTTCCCGGTGGCAGCTTAAAGTTTTGATTTTT 316
Score = 102 bits (55), Expect = 1e-20
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 2390 TAAAGATCAAGAAACAAGCGTAGTAGATTCTCCTCTTCCCGTTTCTTCTCAACCGAGCAT 2449
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 2235 TAAAGATCAAGAAACAAGCGTAGTAGATTCGCCTCTTTCCATTTCTTCTCAACCGAGCAT 2294
Query 2450 CGAGTTT 2456
||||||
Sbjct 2295 GGAGTTT 2301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117432225335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5