BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30230.1

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491728 jgi|Araly1|491728|fgenesh2_kg.7__1161__AT4G30230.1        1371    0.0  


> Ahg491728 jgi|Araly1|491728|fgenesh2_kg.7__1161__AT4G30230.1
Length=1079

 Score = 1371 bits (742),  Expect = 0.0
 Identities = 973/1080 (90%), Gaps = 34/1080 (3%)
 Strand=Plus/Plus

Query  32    atggaaactacaaaaaacactaatctccaaaa-cc--ctactaaactcccaaaacCATTT  88
             |||||||||  ||||||||| ||||||||||| ||  |||||||||||||||||||||||
Sbjct  1     ATGGAAACTTTAAAAAACACCAATCTCCAAAACCCTACTACTAAACTCCCAAAACCATTT  60

Query  89    CAACATCACCTAGAAGAAGAAAAAGAAGACGCACTATCTCTCCGAGATCTTCCCCTCAAA  148
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  61    CAACATCACCTAGAAGAAGAAAAAGAAGAAGCACTATCTCTCCGAGATCTTCCCCTCAAT  120

Query  149   GCCAAGAATCCTAAT-----------CCC-ACCACCACCGAAGACCACAAAGAACCGTCA  196
             ||| |||| ||||||           ||| ||||||||||||||||||   |||||||||
Sbjct  121   GCCGAGAACCCTAATCCCACCGCCACCCCAACCACCACCGAAGACCACCGTGAACCGTCA  180

Query  197   ACGGAACTTTTTGAGTTTCTAACCTCATCCTCCTACGACGTAGCTCCGGCAGAAAATATA  256
             |||||||||||||||||||| || ||| |||||||||||||  ||||||||||||| |||
Sbjct  181   ACGGAACTTTTTGAGTTTCTTACGTCAACCTCCTACGACGTTTCTCCGGCAGAAAACATA  240

Query  257   ATCTTTGGCGGGAAACTCATCCCTTTAAACTACCAAAATGCTTTCTTTTCACCTCCTGAG  316
             ||||||||||| |||||||||||||||||||||||||||||  ||||||||||||| || 
Sbjct  241   ATCTTTGGCGGCAAACTCATCCCTTTAAACTACCAAAATGCCCTCTTTTCACCTCCCGAA  300

Query  317   CACATTAGCCGTCGAATCCGTTCACGGTCTGAGTCCTTATCCGCGATACAAGGCCATAAG  376
             |||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct  301   CACATTAGCCCTCGAATTCGTGCACGGTCTGAGTCCTTATCCGCCATACAAGGCCATAAG  360

Query  377   CTTAACCGTCCCGGTAGTTGTACCGTGGCACGTCGTGACAATGCGGGACCTATGAGGGCA  436
             ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct  361   CTTAACCGTCCAGGTAGTTGTTCTGTGGCACGTCGTGACAATGCGGGACCTATGAGGACA  420

Query  437   AGCCGCTCTTTAGATTATCGTAAGCTTTCACGTGGTCTAACCACCGTACATTCTCCACCG  496
             ||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct  421   AGCCGTTCTTTAGATTACCGTAAGCTCTCACGTGGTCCAACCACCGTACATTCTCCACCG  480

Query  497   GAAAATAGTTCATCGACTAAAAACACGGGGAAGCCTGAAACAACGTCTTCGGGAAGTGTA  556
             ||||| | |||| || |||||||||||  |||| |||||||  |||| ||||||||||  
Sbjct  481   GAAAACATTTCACCGGCTAAAAACACGACGAAGGCTGAAACGGCGTCGTCGGGAAGTGGG  540

Query  557   AAAAGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTTCCGCCGGAG  616
             ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  541   AAATGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTCCCTCCGGAG  600

Query  617   ATCGAACTCAAGGATATAAAGAGCCGTCAGATTCGCCGGAATATTCCACCGGTTATGTTT  676
             ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct  601   ATCGAACTCAAGGATATCAAGAGCCGCCAGGTTCGCCGGAATATTCCACCGGTTATGTTT  660

Query  677   CCATCTCCTGCTAACAGGAGAGCTCGTGGATCTCG------GTCGCCATCACCGTCACCT  730
             ||||||||||||||| ||||| ||||| |||||||      ||| || ||||| ||||||
Sbjct  661   CCATCTCCTGCTAACCGGAGATCTCGTAGATCTCGATCACCGTCACCGTCACCTTCACCT  720

Query  731   TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG  790
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721   TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG  780

Query  791   CCGTTTTGGGTTCCTCATCCATAAATTACTATATTATTCCTACGAACATTGTGCGCGGTT  850
             ||||||||| |||| ||| |||||||||||||||||| |||| |||||||||| ||||| 
Sbjct  781   CCGTTTTGGATTCCCCATTCATAAATTACTATATTATCCCTATGAACATTGTGTGCGGT-  839

Query  851   ACTTGCTCTGCCGTTGATTAAGAAGGATAGGATCGTCATTTAGTATAAGAAATATCGATA  910
             ||||||| |||||||| |||| |||||||||| |||||||||| ||||||||||||||||
Sbjct  840   ACTTGCTTTGCCGTTGTTTAAAAAGGATAGGAACGTCATTTAGCATAAGAAATATCGATA  899

Query  911   TTGTT-AATTTATTTTGTGAAAGAATGTCGAAATTGTAATTTATTTGGTGAATCGATAAT  969
             ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  900   TTGTTTAATTTATTTTGTGAAAGAATGTCGATATTGTAATTTATTTGGTGAATCGATAAT  959

Query  970   AGTTTGGACCATAACACATCTTATTCACACCttttt-ctttttctttgattttttcgtta  1028
             |||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  960   AGTTTGGACCATAATATATCTTATTCACACTTTTTTTCTTTTTCTTTGATTTTTTCGTTA  1019

Query  1029  ttttgtattt-------cagctcattt---agaatatttcaatatatattttAATAAAAT  1078
             ||||||||||       ||||||||||   |||||||||||||||||||||||||| |||
Sbjct  1020  TTTTGTATTTTGTATTTCAGCTCATTTGTTAGAATATTTCAATATATATTTTAATATAAT  1079



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40257800352


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5