BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30230.1 Length=1081 Score E Sequences producing significant alignments: (Bits) Value Ahg491728 jgi|Araly1|491728|fgenesh2_kg.7__1161__AT4G30230.1 1371 0.0 > Ahg491728 jgi|Araly1|491728|fgenesh2_kg.7__1161__AT4G30230.1 Length=1079 Score = 1371 bits (742), Expect = 0.0 Identities = 973/1080 (90%), Gaps = 34/1080 (3%) Strand=Plus/Plus Query 32 atggaaactacaaaaaacactaatctccaaaa-cc--ctactaaactcccaaaacCATTT 88 ||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 1 ATGGAAACTTTAAAAAACACCAATCTCCAAAACCCTACTACTAAACTCCCAAAACCATTT 60 Query 89 CAACATCACCTAGAAGAAGAAAAAGAAGACGCACTATCTCTCCGAGATCTTCCCCTCAAA 148 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 CAACATCACCTAGAAGAAGAAAAAGAAGAAGCACTATCTCTCCGAGATCTTCCCCTCAAT 120 Query 149 GCCAAGAATCCTAAT-----------CCC-ACCACCACCGAAGACCACAAAGAACCGTCA 196 ||| |||| |||||| ||| |||||||||||||||||| ||||||||| Sbjct 121 GCCGAGAACCCTAATCCCACCGCCACCCCAACCACCACCGAAGACCACCGTGAACCGTCA 180 Query 197 ACGGAACTTTTTGAGTTTCTAACCTCATCCTCCTACGACGTAGCTCCGGCAGAAAATATA 256 |||||||||||||||||||| || ||| ||||||||||||| ||||||||||||| ||| Sbjct 181 ACGGAACTTTTTGAGTTTCTTACGTCAACCTCCTACGACGTTTCTCCGGCAGAAAACATA 240 Query 257 ATCTTTGGCGGGAAACTCATCCCTTTAAACTACCAAAATGCTTTCTTTTCACCTCCTGAG 316 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 241 ATCTTTGGCGGCAAACTCATCCCTTTAAACTACCAAAATGCCCTCTTTTCACCTCCCGAA 300 Query 317 CACATTAGCCGTCGAATCCGTTCACGGTCTGAGTCCTTATCCGCGATACAAGGCCATAAG 376 |||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||| Sbjct 301 CACATTAGCCCTCGAATTCGTGCACGGTCTGAGTCCTTATCCGCCATACAAGGCCATAAG 360 Query 377 CTTAACCGTCCCGGTAGTTGTACCGTGGCACGTCGTGACAATGCGGGACCTATGAGGGCA 436 ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| || Sbjct 361 CTTAACCGTCCAGGTAGTTGTTCTGTGGCACGTCGTGACAATGCGGGACCTATGAGGACA 420 Query 437 AGCCGCTCTTTAGATTATCGTAAGCTTTCACGTGGTCTAACCACCGTACATTCTCCACCG 496 ||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||||| Sbjct 421 AGCCGTTCTTTAGATTACCGTAAGCTCTCACGTGGTCCAACCACCGTACATTCTCCACCG 480 Query 497 GAAAATAGTTCATCGACTAAAAACACGGGGAAGCCTGAAACAACGTCTTCGGGAAGTGTA 556 ||||| | |||| || ||||||||||| |||| ||||||| |||| |||||||||| Sbjct 481 GAAAACATTTCACCGGCTAAAAACACGACGAAGGCTGAAACGGCGTCGTCGGGAAGTGGG 540 Query 557 AAAAGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTTCCGCCGGAG 616 ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 541 AAATGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTCCCTCCGGAG 600 Query 617 ATCGAACTCAAGGATATAAAGAGCCGTCAGATTCGCCGGAATATTCCACCGGTTATGTTT 676 ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| Sbjct 601 ATCGAACTCAAGGATATCAAGAGCCGCCAGGTTCGCCGGAATATTCCACCGGTTATGTTT 660 Query 677 CCATCTCCTGCTAACAGGAGAGCTCGTGGATCTCG------GTCGCCATCACCGTCACCT 730 ||||||||||||||| ||||| ||||| ||||||| ||| || ||||| |||||| Sbjct 661 CCATCTCCTGCTAACCGGAGATCTCGTAGATCTCGATCACCGTCACCGTCACCTTCACCT 720 Query 731 TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG 780 Query 791 CCGTTTTGGGTTCCTCATCCATAAATTACTATATTATTCCTACGAACATTGTGCGCGGTT 850 ||||||||| |||| ||| |||||||||||||||||| |||| |||||||||| ||||| Sbjct 781 CCGTTTTGGATTCCCCATTCATAAATTACTATATTATCCCTATGAACATTGTGTGCGGT- 839 Query 851 ACTTGCTCTGCCGTTGATTAAGAAGGATAGGATCGTCATTTAGTATAAGAAATATCGATA 910 ||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||| Sbjct 840 ACTTGCTTTGCCGTTGTTTAAAAAGGATAGGAACGTCATTTAGCATAAGAAATATCGATA 899 Query 911 TTGTT-AATTTATTTTGTGAAAGAATGTCGAAATTGTAATTTATTTGGTGAATCGATAAT 969 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 900 TTGTTTAATTTATTTTGTGAAAGAATGTCGATATTGTAATTTATTTGGTGAATCGATAAT 959 Query 970 AGTTTGGACCATAACACATCTTATTCACACCttttt-ctttttctttgattttttcgtta 1028 |||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 960 AGTTTGGACCATAATATATCTTATTCACACTTTTTTTCTTTTTCTTTGATTTTTTCGTTA 1019 Query 1029 ttttgtattt-------cagctcattt---agaatatttcaatatatattttAATAAAAT 1078 |||||||||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct 1020 TTTTGTATTTTGTATTTCAGCTCATTTGTTAGAATATTTCAATATATATTTTAATATAAT 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40257800352 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5