BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30270.1 Length=1207 Score E Sequences producing significant alignments: (Bits) Value Ahg944964 jgi|Araly1|944964|scaffold_701193.1 1356 0.0 > Ahg944964 jgi|Araly1|944964|scaffold_701193.1 Length=851 Score = 1356 bits (734), Expect = 0.0 Identities = 803/837 (96%), Gaps = 2/837 (0%) Strand=Plus/Plus Query 124 gtacgcacacacacaAAGACAATGTCTCCTTTCAAAATATTCTTCTTCACGACTCTTCTC 183 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 GTACGCGCACACACAAAGACAATGTCTCCTTTCAAAATATTCTTCTTCACGGCTCTTCTC 60 Query 184 GTGGCGGCGTTTTCAG-TGTCGGCTGCTGATTTCAACACTGACGTCAACGTAGCTTGGGG 242 |||||||||||||| | | || || ||||||||||| ||||||||||||||||||||||| Sbjct 61 GTGGCGGCGTTTTC-GTTCTCCGCCGCTGATTTCAATACTGACGTCAACGTAGCTTGGGG 119 Query 243 AAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCCTTAGACAAATC 302 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 120 AAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCTTTAGACAAATC 179 Query 303 CTCTGGTTCCGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGAT 362 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTCTGGTTCTGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGAT 239 Query 363 TAAGCTTGTTCCTGGTAACTCTGCAGGAACAGTCACAACTTTTTACCTAAAATCCGAAGG 422 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 240 TAAGCTTGTTCCTGGTAACTCAGCAGGAACAGTCACAACTTTTTACCTAAAATCTGAAGG 299 Query 423 ATCCACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATAC 482 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ATCGACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATAC 359 Query 483 TTTACACACTAATGTTTACACTCAAGGTAAAGGTGACAAAGAGCAACAATTCCATCTCTG 542 ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| Sbjct 360 TTTACACACTAATGTTTACACTCAAGGCAAAGGTGATAAAGAGCAACAATTCTATCTCTG 419 Query 543 GTTCGACCCAACCGCCAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCAT 602 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTCGACCCAACCGCAAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCAT 479 Query 603 ATTGACCGTCGATGACACACCCATTAGAGAGTTTAAAAACTATGAGTCTCTCGGTGTCTT 662 ||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||| Sbjct 480 ATTGACCGTTGATGACACACCGATTAGAGAGTTTAAAAACCATGAGTCTATCGGTGTCTT 539 Query 663 GTTTCCAAAGAACAAGCCGATGAGGATGTACGCGAGTTTATGGAACGCAGACGATTGGGC 722 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 540 GTTTCCAAAGAACAAGCCGATGAGGATGTACGCAAGTTTATGGAACGCAGACGATTGGGC 599 Query 723 AACAAGAGGCGGTCTTGTTAAAACTGATTGGTCTAAAGCTCCATTCATGGCTTCTTACAG 782 ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 600 AACTAGAGGCGGTCTTGTTAAAACGGATTGGTCTAAAGCTCCATTCATAGCTTCTTACAG 659 Query 783 AAACATTAAGATTGACTCGAAACCAAACTCCAATTGGTACACTCAAGAAATGGATTCAAC 842 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 660 AAACATTAAGATCGACTCGAAACCAAACTCCAACTGGTACACTCAAGAAATGGATTCGAC 719 Query 843 AAGCCAAGCTAGACTCAAATGGGTTCAGAAGAATTACATGATCTACAATTATTGTACTGA 902 |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 720 GAGCCAAGCTAGACTCAGATGGGTTCAGAAGAACTACATGATCTACAATTATTGTACTGA 779 Query 903 CCATAGGAGGTTTCCACAGGGAGCTCCTAAGGAATGCACAACAAGCTCATAGAATCT 959 || || |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 780 CCGTAAGAGGTTTCCACAGGGAGCCCCTAAGGAATGCACAACAAGCTCATAGAATCT 836 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45061287894 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5