BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30360.1
Length=2636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491716 jgi|Araly1|491716|fgenesh2_kg.7__1149__AT4G30360.1 3834 0.0
Ahg481319 jgi|Araly1|481319|fgenesh2_kg.4__379__AT2G24610.1 407 2e-112
> Ahg491716 jgi|Araly1|491716|fgenesh2_kg.7__1149__AT4G30360.1
Length=2479
Score = 3834 bits (2076), Expect = 0.0
Identities = 2359/2494 (95%), Gaps = 26/2494 (1%)
Strand=Plus/Plus
Query 1 AAACAAATATCCCTCCGATTTCTGACTCGT-CCCGTGACTCAGTGATTCTCCT-CTTC-- 56
|||||||||||| ||||| ||||||||||| |||||||||||||| ||| ||| ||||
Sbjct 1 AAACAAATATCCTTCCGAGTTCTGACTCGTCCCCGTGACTCAGTGGTTC-CCTCCTTCAA 59
Query 57 -CAATCCTCTCCGGAAGAACTAAACAAAAAC-ACGATCTTTCTCAGATTT--agagagag 112
|||||||||||||| ||| ||||||||| | || || |||||||||||| ||||||||
Sbjct 60 TCAATCCTCTCCGGAGGAATTAAACAAAACCAACAATTTTTCTCAGATTTAGAGAGAGAG 119
Query 113 taagagtgagagagtgtcagagaCACGAATCAAAGAAATGATTTTTAAAAGCTTCTGTTA 172
||||||| ||||||||||||||| |||||||||||||||||||||||| | | || |
Sbjct 120 TAAGAGT--GAGAGTGTCAGAGACGTGAATCAAAGAAATGATTTTTAAAAAC-T-TG-T- 173
Query 173 ATTC-TAA-TTTGCATAGATTTGTTTACTCGAGCTTGAGCTTGAGCTTCTTCTAATGGAG 230
||| ||| |||| | || ||| ||| | | || ||||||||||||||||||||||||
Sbjct 174 GTTCGTAATTTTG-A-AGGTTT-TTTTTTTTA-CTCGAGCTTGAGCTTCTTCTAATGGAG 229
Query 231 TTAAGGAAGGACAAGCTTCTTATGTTTTACTCAGAGGGGAAAGAAAGCAAAGAAGCTAAA 290
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 230 TTAAGGAAGGACAAGCTTCTTATGTTTTATTCAGAGGGGAAAGAACGCAAAGAAGCTATC 289
Query 291 TGGGCAGTGAATGATCCAATGAGCAAATCTTATAAGCTCTCTTTACCTTCAGCACTAAGA 350
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGGGCAGTGAATGACCCAATGAGCAAATCTTATAAGCTCTCTTTACCTTCAGCACTAAGA 349
Query 351 CCTGATAATCTCTTACCTGGAAATAGACTTAGATACACTGATGCTTCTAAGTCCAAATCT 410
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 350 CCTGATAATCTCTTACCTGGAAATAGACTTAGATACACTGATGCTTCTAAATCCAAATCT 409
Query 411 TCTAAAGTCTCATGGTACAAGACTATTCTTGATCCAGGAAGTGAGATTGTCTTGAAATGG 470
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 410 TCCAAAGTCTCATGGTACAAGACAATTCTTGATCCAGGAAGTGAGATTGTCTTGAAATGG 469
Query 471 AATTGGGTCTTCATTGTCTCATGTATGGTTGCTCTCTTCATCGACCCGTTGTACTTCTTT 530
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 470 AATTGGGTCTTCATTGTCTCGTGTATGGTTGCTCTTTTCATCGACCCGTTGTATTTCTTC 529
Query 531 GTCCCAGCTATAGGAGGAGATAAAAACTATCCTTGTGCAAGGACTGATACAAGTTTAAGC 590
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 530 GTGCCAGCTATAGGAGGAGATAAAAACTATCCATGTGCAAGGACTGATACGAGTTTAAGC 589
Query 591 ATCCTTGTTACTTTCTTCAGGACAATAGCGGATCTTTTCTACTTGCTGCACATTTTCATT 650
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 590 ATTCTTGTTACGTTCTTCAGGACAATTGCGGATCTTTTCTACTTGCTGCACATTTTCATT 649
Query 651 AAGTTTAGGACTGGTTTCATTGCGCCTAATTCAAGTACTAGAGTGTTTGGTAGAGGTGAG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAGTTTAGGACTGGTTTCATTGCGCCTAATTCAAGTACTAGAGTGTTTGGTAGAGGTGAG 709
Query 711 CTTGTGATGGATCCTAAGGCTATTGCTTGGAGGTATATTAAATCTGACTTCATCATCGAT 770
|| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 710 CTGGTGATGGATTCTAAGGCAATTGCTTGGAGGTATCTTAAATCTGACTTCATCATTGAT 769
Query 771 CTCATTGCGACGTTACCACTTCCACAGATAGTTATCTGGTTTGTTATATCGACTACAAAA 830
||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 770 CTCATCGCGACGTTACCACTTCCGCAGATAGTTATCTGGTTTGTTATATCGTCCACAAAA 829
Query 831 AGTTACCGGTTTGATCATAACAACAATGCTATTGCTTTGATTGTGCTCCTCCAATACATC 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 830 AGTTACCGGTTTGATCATAACAACAATGCTATTGCTTTGATTGTGCTCCTCCAATACACC 889
Query 891 CCAAGATTCTATTTGATAATTCCGTTAAGTTCTCAAATTGTTAAAGCAACTGGAGTTGTT 950
||||| |||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 890 CCAAGGTTCTATTTGATAATTCCGTTAAGTTCTCAAATCGTCAAAGCGACTGGAGTGGTT 949
Query 951 ACAAAGACTGCTTGGGCTGGAGCTGCTTATAATCTTTTGCTATACATGCTGGCTAGTCAT 1010
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 950 ACAAAGACTGCGTGGGCTGGAGCTGCTTATAACCTTTTGCTATACATGCTAGCTAGTCAT 1009
Query 1011 GTGCTTGGTGCAGCCTGGTATATATTATCGGTTGATAGATATACATCGTGCTGGAAATCA 1070
|| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1010 GTACTTGGTGCTGCGTGGTATATATTATCGGTCGATAGATATACATCGTGCTGGAAATCA 1069
Query 1071 AGATGCAATGGTGAAGC-TGGCCAAGTTAATTGTCAGCTATATTACTTAGACTGTGATTC 1129
||||| | | ||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1070 CGATGCGACAGAGAA-CGTGGCCTAGTTAATTGTCAGCTATATTACTTAGACTGTGATTC 1128
Query 1130 AATGTATGACAATAATCAGATGACTTGGGCAAATGTCACAAAAGTGTTTAAACTCTGTGA 1189
|||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1129 AATGTATGACGACAATCAGATGAATTGGGCAAATGTCACAAAAGTGTTTAAACTCTGTGA 1188
Query 1190 TGCACGGAATGGCGAGTTCAAGTATGGGATCTTTGGGAATGCAATCACGAAAAACGTTGT 1249
||||||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||
Sbjct 1189 TGCACGGAATGGCGAGTTCAATTATGGGATATTCGGGAACGCAATCACGAAAAAAGTTGT 1248
Query 1250 GTCTTCACAGTTCTTCGAGAGATATTTCTACTGTTTGTGGTGGGGATTGCAGCAGCTTAG 1309
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GTCTTCAAACTTCTTCGAGAGATATTTCTACTGTTTGTGGTGGGGATTGCAGCAGCTTAG 1308
Query 1310 TTCTTATGGACAGAATTTGTCCACGACCATGTTCATGGGCGAAACCACATTTGCTGTTCT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TTCTTATGGACAGAATTTGTCCACGACCATGTTCATGGGCGAAACCACATTTGCTGTTCT 1368
Query 1370 CATTGCAATCTTTGGTCTTGTCCTCTTTGCCCATCTCATTGGGAATATGCAGACATATCT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CATTGCAATCTTTGGTCTTGTCCTCTTTGCCCATCTCATTGGGAATATGCAGACATATCT 1428
Query 1430 GCAATCTTTGACTGTACGGCTTGAGGAATGGAGATTGAAGAAGAGAGACACTGAGGAGTG 1489
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1429 GCAATCTTTGACTGTACGGCTTGAGGAATGGAGATTGAAGAAAAGAGACACTGAGGAGTG 1488
Query 1490 GATGAGACATCGTCAACTTCCTGAAGAGTTGAGAAACCGTGTGAGGCGATATGAGCAGTA 1549
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1489 GATGAGACATCGTCAACTTCCTGAAGAATTGAGAAACCGTGTGAGACGATATGAGCAGTA 1548
Query 1550 TAAGTGGCTTGCAACAAGAGGAGTCGATGAAGAGGTTCTCCTGCAAAGTTTACCCACTGA 1609
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1549 TAAGTGGCTTGCAACAAGAGGAGTCGATGAAGAGGTTCTGCTGCAAAGTTTACCCACTGA 1608
Query 1610 TCTTCGCCGTGATATTCAACGTCACCTATGTTTAGATCTTGTTCGAAGAGTCCCATTTTT 1669
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1609 TCTTCGCCGTGATATTCAACGTCACCTATGTTTAGATCTCGTTCGAAGAGTCCCATTTTT 1668
Query 1670 CTCTCAAATGGATGATCAGCTGCTTGATGCGATATGTGAGCGCCTGGTTTCTTCTCTGTG 1729
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1669 CTCTCAAATGGATGATCAGTTACTCGATGCGATATGTGAGCGCCTGGTTTCTTCTCTGTG 1728
Query 1730 TACTGAAGGGACTTACCTTGTACGTGAAGGTGACTTGATCTCAGAGATGCTCTTCATCAT 1789
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 TACCGAAGGGACATACCTTGTACGTGAAGGTGACTTGATCTCAGAGATGCTCTTCATCAT 1788
Query 1790 CAGAGGTAGACTCGAGAGTTCCACAACCAATGGAGGCAGAACCGGTTTCTTCAACTCGAT 1849
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1789 CAGAGGTAGACTCGAGAGTTCCACAACCAATGGAGGCCGAACCGGTTTCTTCAACTCGAT 1848
Query 1850 TATACTTAGACCTGGAGATTTCTGTGGGGAAGAGCTTCTTTCTTGGGCTTTGCTTCCAAA 1909
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1849 TATACTTAGACCTGGAGATTTCTGCGGGGAAGAACTTCTTTCTTGGGCTTTGCTTCCAAA 1908
Query 1910 ATCAACCTTGAATTTACCATCTTCTACAAGAACAGTTAGGGCTTTAGTTGAAGTCGAAGC 1969
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1909 ATCAACCTTGAATTTACCATCTTCTACAAGAACAGTTAGGGCTTTAGTAGAAGTCGAAGC 1968
Query 1970 ATTCGCTCTTCGAGCTGAAGATTTGAAATTTGTTGCAAATCAGTTTAGGCGGTTACACAG 2029
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1969 ATTTGCTCTTCGAGCTGAAGATTTGAAGTTTGTTGCAAATCAGTTTAGGCGGTTACACAG 2028
Query 2030 CAAGAAGCTTCAACATACATTCAGATTCTACTCTCACCATTGGAGAACTTGGGCTGCTTG 2089
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 CAAGAAGCTTCAACATACTTTCAGATTCTACTCTCACCATTGGAGAACTTGGGCTGCTTG 2088
Query 2090 CTTCATACAAGCGGCTTGGCGCAGGTACAAGAGAAGAGTTATGGAGAATAACCTCACTGC 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 CTTCATACAAGCGGCTTGGCGCAGGTACAAGAGAAGAGTTATGGAGAATAACCTCACTGC 2148
Query 2150 GATTGAATCAATGGAAAATgaagaaggagaagtaggagaagaattagtagtagtagaaga 2209
||||||| ||||||||||||||||||||||||||||||||||| ||| || | ||||||
Sbjct 2149 GATTGAAACAATGGAAAATGAAGAAGGAGAAGTAGGAGAAGAAGTAGAAG-A--AGAAGA 2205
Query 2210 agaagagtgtgttgaggagagtcctagaaCAAAGATGAACCTTGGAGTTATGGTTTTGGC 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 AGAAGAGTGTGTTGAGGAGAGTCCTAGAACAAAGATGAACCTTGGAGTTATGGTTTTGGC 2265
Query 2270 ATCGCGTTTTGCAGCTAATACAAGACGCGGTGTTGCAGCTCAGAGAGTTAAGGATGTAGA 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2266 ATCGCGTTTTGCAGCTAATACAAGACGCGGTGTTGCAGCTCAGAGAGTTAAGGATGTCGA 2325
Query 2330 ATTACCCCGGTTTAAGAAACCCGAGGAGCCTGATTTCTCTGCTGAGCATGATGATTGACT 2389
||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2326 ATTGCCTCGGTTTAAGAAACCAGAAGAGCCTGATTTCTCTGCTGAGCATGATGATTGACT 2385
Query 2390 GATGTATAACCAGGAGAAGAAGCTGACTTTGTTCCATAGAAGATCTTAATGACAAGAACA 2449
||| ||||||||||| |||||||||||||| || || || |||| || ||||||||||||
Sbjct 2386 GATTTATAACCAGGAAAAGAAGCTGACTTTATTTCACAGGAGATTTTTATGACAAGAACA 2445
Query 2450 CTACAGAGTAAGTTTCCTGTTCCTTTGGGAGACA 2483
||||||| ||||||||||| ||||||||||||||
Sbjct 2446 CTACAGATTAAGTTTCCTGGTCCTTTGGGAGACA 2479
> Ahg481319 jgi|Araly1|481319|fgenesh2_kg.4__379__AT2G24610.1
Length=2342
Score = 407 bits (220), Expect = 2e-112
Identities = 703/933 (75%), Gaps = 46/933 (5%)
Strand=Plus/Plus
Query 1215 GGGATCTTT-G-GGAATGCAATCACGAAAAACGTTGTGTCTTCACAGTTCTTCGAGAGAT 1272
||||| ||| | || |||| |||| |||||||| || || || | ||||| |||| ||
Sbjct 1046 GGGAT-TTTCGCGG-ATGCTCTCACCAAAAACGTGGTTTCCTCGCCTTTCTTGGAGAAAT 1103
Query 1273 ATTTCTACTGTTTGTGGTGGGGATTGCAGCAGCTTAGTTCTTATGGACAGAATTTG-TC- 1330
| || || |||||||||| ||| ||||| | || |||||||||||||||||| || |
Sbjct 1104 ACTTGTATTGTTTGTGGTTTGGACTGCAGAATCTAAGTTCTTATGGACAGAATCTGAGCA 1163
Query 1331 CACG-ACC-ATGTTCATGGGCGAAACCACATTTGCTGTTCTCATTGCAATCTTTGGTCTT 1388
|| | ||| ||||| | || || | |||||| | || | || |||||||||||
Sbjct 1164 CAAGTACCTCTGTTC-T---TGAGACAATGTTTGCTATCCTTGTGGCTATCTTTGGTCTA 1219
Query 1389 GTCCTCTTTGCCCATCTCATTGGGAATATGCAGACATATCTGCAATCTTTGACTGT-ACG 1447
|| | ||||| | | | || || || |||||||| ||| ||||||| | || || | |
Sbjct 1220 GTTTTGTTTGCTCTTTTAATCGGAAACATGCAGACGTATTTGCAATCGATCACGGTGA-G 1278
Query 1448 GCTTGAGGAATGGAGA-TTGAAGAAG-AGAGACACTGAGGAGTGGATGAGACATCGTCAA 1505
|||||||| |||||| || ||| || |||||||| || || |||||| ||||||| | |
Sbjct 1279 ACTTGAGGAGTGGAGACTT-AAG-AGAAGAGACACAGAAGAATGGATGGGACATCGACTA 1336
Query 1506 CTTCCTGA-AGAGT-TGAGA-AACCGTGTGAGGCGATAT-GAGCAGTATAAGTGGCTTGC 1561
|| || | ||| | | ||| || || |||||||| | | | ||||||||| ||||| ||
Sbjct 1337 CTGCC--ACAGAATCTTAGAGAA-CGAGTGAGGCG-TTTCGTGCAGTATAAATGGCTGGC 1392
Query 1562 AACAAGAGGAGTCGATGAAGAGGTTC-TCCTGCAAAGTTTACCCACTGATCTTCGCCGTG 1620
|| |||| || || ||||| | | || || |||||| | ||||| || | |
Sbjct 1393 GACTCGAGGTGTTGACGAAGA-AACCATTCTTCATTCATTACCCGCAGATCTCCGTAGAG 1451
Query 1621 ATATTCAACGTCACCTATGTTTAGATCTTGTTCGAAGAGT-CC-CATTTTTCTCTCAAAT 1678
| || ||||| || || ||| | ||||||||||| | || || | | ||| | |||||
Sbjct 1452 ACATCCAACGCCATCTCTGTCTCGATCTTGTTCGTCGTGTACCGC-TATTT-GCACAAAT 1509
Query 1679 GGATGATCAGCTGCTTGATGCGATATGTGAGCGCCTGGTTTCTTCTCTGTGTACTGAAGG 1738
|||||||||| | || ||||| |||||||| || | | || ||||| | || ||||
Sbjct 1510 GGATGATCAGTTACTAGATGCAATATGTGAACGGTTAGCATCATCTCTAAGCACACAAGG 1569
Query 1739 G-ACTTACCTTGTACGTGAAGGTGACTTGA-TCTCAGAGATGCTCTTCATCATCAGAGGT 1796
| || ||| |||||||||||||||| | | | | || ||||||||||| ||| | ||
Sbjct 1570 GAAC-TACATTGTACGTGAAGGTGA-TCCAGTGACGGAAATGCTCTTCATTATCCGTGGA 1627
Query 1797 AGACTCGAGAGTTCCACAACCAATGGAGGCAGAACCGGTTTCTTCAACTCGATTATACTT 1856
| |||||| || || || || ||||||||||||||||||||||||||||| || | |||
Sbjct 1628 AAACTCGAAAGCTCGACGACTAATGGAGGCAGAACCGGTTTCTTCAACTCAATCACACTC 1687
Query 1857 AGACCTGGAGATTTCTGTGGGGAAGAGCTTCTTTCTTGGGCTTTGCTTCCAAAATCAACC 1916
||||| |||||||||||||| |||||||||||| | ||||| |||||||||||||||||
Sbjct 1688 AGACCAGGAGATTTCTGTGGAGAAGAGCTTCTTGCATGGGCATTGCTTCCAAAATCAACA 1747
Query 1917 TTGAATTTACCATCTTCTACAAGAACAGTTAGGGCTTTAGTTGAAGTCGAAGCATTCGCT 1976
| || |||||||| || |||||||| || | || |||| ||||| ||||| || |||
Sbjct 1748 GTAAACTTACCATCCTCAACAAGAACGGTGCGAGCCTTAGAAGAAGTTGAAGCCTTTGCT 1807
Query 1977 CTT-CGAGCTGAAGATTTGAAATTTGTTGCAAATCAGTTTAGGCGGT-TACACAGCAAGA 2034
|| | ||| | ||| | |||||||| || || || || ||||| | |||| |||||||
Sbjct 1808 -TTACAAGCAGGTGATCTCAAATTTGTGGCTAACCAATTCAGGCG-TCTACATAGCAAGA 1865
Query 2035 AGCTTCAACATACATTCAGATTCT-ACTCTCACCATTGGAGAACTTGGGCTGCTTGCTTC 2093
|||| ||||| |||||| | || | ||||||| || |||||||||||||||||||| ||
Sbjct 1866 AGCTGCAACACACATTCCG-TTATTACTCTCATCAGTGGAGAACTTGGGCTGCTTGTTTT 1924
Query 2094 ATACAAG-CGGCTTGGCG-CAGGTACAAGAGAA 2124
|||||| || | ||| | | |||| |||||||
Sbjct 1925 GTACAAGTCG-CGTGGAGAC-GGTATAAGAGAA 1955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99415539450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5