BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30450.1 Length=649 Score E Sequences producing significant alignments: (Bits) Value Ahg491707 jgi|Araly1|491707|fgenesh2_kg.7__1140__AT4G30450.1 894 0.0 > Ahg491707 jgi|Araly1|491707|fgenesh2_kg.7__1140__AT4G30450.1 Length=638 Score = 894 bits (484), Expect = 0.0 Identities = 596/648 (92%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 3 CTAATCAAGTTACACTATAAACTCAAACACATCTATCGGCAAGTCTTAACACACGAAGAT 62 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1 CTAATCAAGTTACACTATAAACTCAAATACATCGATCGGCAAGTCTTAACACACGAAGAT 60 Query 63 TTCCAAAATGGCTAAGGCCGAAGGTCTTTTTCTTCTTGGTTTAGTAGTTATTTCAAGTTT 122 |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 61 TTCCAAAATGGCTAGGGCCCAAGGTCTTTTTCTTCTTGGTTTATTAGTTATTTCAAGTTT 120 Query 123 AGTTATGTTAACCGAGAGCCGACTCGCAAGAAAAGACTTGGGGATTGACCTAGGTGGGAT 182 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 121 AGTTATGTTAACCGAGAGCCGAGTCGCAAGAAAAGACTTGGGGCTTGACCTAGGTGGGAT 180 Query 183 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 240 Query 243 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCCAGCTCATCATC 302 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 241 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCTAGCTCGTCATC 300 Query 303 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCCGGTTCATTTGCTGG 362 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCTGGTTCATTTGCTGG 360 Query 363 CTCTAGAGCTGGATCAGGATCTGGTAACTAAATTATAATA---A-TTACTTTTCGACTTA 418 |||| |||||||||||||||||||||||||||||||||| | ||| ||||| ||||| Sbjct 361 ATCTAAAGCTGGATCAGGATCTGGTAACTAAATTATAATATGCAGTTAATTTTCTACTTA 420 Query 419 AAGTGTGAAACAATAAGTATGTTTTATGTTTTTGGTTCGTCGTAGTTAATATCGTATGTA 478 ||||||||||| ||||||||||| |||||| |||||| |||||| ||| ||||||||||| Sbjct 421 AAGTGTGAAACTATAAGTATGTTGTATGTTGTTGGTTTGTCGTAATTAGTATCGTATGTA 480 Query 479 CGGAAT-GGAATGAATAATTTGTTACCGTAAGTTATGTTTTGTTTGAGCGAGTGTGTGTA 537 || ||| ||| ||||||| ||| || ||||||||||||| |||||| ||||| | Sbjct 481 CGAAATTGGA-TGAATAAACTGTCGCCATAAGTTATGTTTTATTTGAG----TGTGT--A 533 Query 538 CCTAGCTTACTCTCTCTATTCAAGTCTTTCACCAAAAGTAGAATCTCTTTAGATTTGGAA 597 |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct 534 CCTAGCTTACTCTCTCAATTCAAGTATTTTGCCAAAAGTAGAATCTCTTTAGATTTGGAT 593 Query 598 CAGAACATGTTTGATTAATCGTAAATTATTGGTAATTCGAATTTGAGA 645 |||| |||||| || ||||||||||| ||||||| |||||||||| Sbjct 594 CAGAGCATGTTCAATCAATCGTAAATT---GGTAATTTGAATTTGAGA 638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23788700208 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5