BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30460.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491706 jgi|Araly1|491706|fgenesh2_kg.7__1139__AT4G30460.1 1214 0.0
> Ahg491706 jgi|Araly1|491706|fgenesh2_kg.7__1139__AT4G30460.1
Length=798
Score = 1214 bits (657), Expect = 0.0
Identities = 757/804 (94%), Gaps = 12/804 (1%)
Strand=Plus/Plus
Query 1 ATTCATCAAGAGCACTGCAAAAGCACTCTAAATTGGGGTG--AAAAAGCATTACCAAACA 58
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATTCATCAAGAGCACTGCAAAAGCACTCTAAATTGGGGGGAAAAAAAGCATTACCAAACA 60
Query 59 CCAAATAAATATGTCTGATCTGAATAACTCATCATCACTCATTCTAATAACTTTGATTTT 118
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 61 CCAAATAAATATGTC---TCTGAGTAACTTTTCATCACTCATTCTAATAACTTTGATATT 117
Query 119 GGCCACATCAGTTCTAGTCTCCGAGAGCCGGGTCGCAAGAAAAGACTTGGGTTTGGACCT 178
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGCCACATCAGCCCTAGTCTCCGAGAGCCGGGTCGCAAGAAAAGACTTGGGTTTGGACCT 177
Query 179 TGGAGGGATCGGTGCT-GGT-ATAGGCATAGGCATAGGTATCGGTGGAGGTGGATCCGGA 236
||| ||||| || | | ||| | || || ||||||||||||||||||||||||||||||
Sbjct 178 TGGCGGGATAGG-GATCGGTGCT-GGTATTGGCATAGGTATCGGTGGAGGTGGATCCGGA 235
Query 237 TCCGGAGCTGGTGCCGGGTCTGGATCCGGAGGAGGAGGATCAAGCTCTTCTTCCTCATCT 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 236 TCCGGAGCTGGTGCCGGGTCTGGATCCGGAGGAGGAGGGTCAAGCTCTTCTTCCTCATCT 295
Query 297 AGCTCTAGTTCTTCTTCTAGCTCCGGTGGTGGTGGAGGTGATGCAGGATCCGAAGCTGGA 356
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 296 AGCTCTAGTTCTTCTTCCAGCTCCGGTGGTGGAGGAGGTGATGCAGGATCCGAAGCTGGA 355
Query 357 TCATACGCCGGATCACATGCCGGGTCTGGTTCGGGAGGACGTTCCGGGTCAGGCCgtgga 416
|| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 356 TCCTACGCCGGATCACGTGCCGGCTCTGGTTCGGGAGGACGTTCTGGGTCAGGCCGCGGA 415
Query 417 agaggaagtggaggaggagggggtcacggtggaggaggtggaggaggagggggtagaggt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGAGGAAGTGGAGGAGGAGGGGGTCACGGTGGAGGAGGTGGAGGAGGAGGGGGTAGAGGT 475
Query 477 ggaggaggtggaTCCGGTAACGGAGAAGGATACGGTGAAGGCGGTGGATATGGTGGAGGA 536
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 476 GGAGGAGGTGGATCCGGTAACGGAGGAGGGTACGGTGAAGGCGGTGGATATGGTGGAGGA 535
Query 537 TATGGTGGTGGCGACGACTGAATGAAGAATATTGCATGCATGCAATATTGTGTTTTATAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TATGGTGGTGGCGACGACTGAATGAAGAATATTGCATGCATGCAATATTGTGTTTTATAC 595
Query 597 GTAATTATATTATGTTATTAGTATG-AGAAAAATAAAATGCTTGAAAAGTAAACTTTCTA 655
|| ||||||| ||||||||||||| | |||||||||||||| |||||||||| ||||||
Sbjct 596 GTCATTATATGATGTTATTAGTATATAAAAAAATAAAATGCTAGAAAAGTAAATTTTCTA 655
Query 656 AAGTGTGTGAGTACAGGAGATGGAAAAGGAGGAATTCTAATGTGTTTGGTT-CGTAATTA 714
||||||||||||| |||||||||||||||| |||||||||||||||||||| | || |||
Sbjct 656 AAGTGTGTGAGTAAAGGAGATGGAAAAGGATGAATTCTAATGTGTTTGGTTACTTA-TTA 714
Query 715 TATACCCTTCCATATTCGAATTGGATTCTTGGTGTTGTATATGTTTTACTTTTGTACTAT 774
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 715 TATACTCTTCCATATTCGAATTGGATTCTTGGTGTTGTATTTGTTTTACATTTGTACTAT 774
Query 775 AAGTTGTAATTTCCCAATTTAAAT 798
||||||||||||||||||||||||
Sbjct 775 AAGTTGTAATTTCCCAATTTAAAT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5