BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30470.1 Length=1379 Score E Sequences producing significant alignments: (Bits) Value Ahg491705 jgi|Araly1|491705|fgenesh2_kg.7__1138__AT4G30470.1 1886 0.0 Ahg481248 jgi|Araly1|481248|fgenesh2_kg.4__308__AT2G23910.1 832 0.0 > Ahg491705 jgi|Araly1|491705|fgenesh2_kg.7__1138__AT4G30470.1 Length=1340 Score = 1886 bits (1021), Expect = 0.0 Identities = 1141/1196 (95%), Gaps = 20/1196 (2%) Strand=Plus/Plus Query 1 AACAGAAAAATAGTTCACCCAACTTTCTCCTATTAATACTTGCCTCTTCTCTCTTCCTAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACAGAAAAATAGTTCACCCAACTTTCTCCTATTAATACTTGCCTCTTCTCTCTTCCTAC 60 Query 61 TTCTAACCTTC-T-TT-TT-CTC--CTTCATCACACACATATACACACGCTTTCGTTTAA 114 ||||||||||| | || || ||| ||||||||||||||||||||||||||||||||||| Sbjct 61 TTCTAACCTTCTTCTTCTTCCTCTTCTTCATCACACACATATACACACGCTTTCGTTTAA 120 Query 115 ACTCTCTCTGTTTCAATCATTAATCAGAAAGAAGCAACACAA-ATATGGATCACGACAAG 173 |||||||||| |||||||| |||||| ||||||||||| || ||||||||||||||||| Sbjct 121 ACTCTCTCTGCTTCAATCAATAATCA-CAAGAAGCAACA-AACATATGGATCACGACAAG 178 Query 174 TCTACTTCTTGTTGCTGCGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAG 233 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TCCACTTCTTGTTGCTGCGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAG 238 Query 234 AAATTGCTTAGCAGAGGATACTCTGTTCACGCAGCGATTCGTAGAAACGGGGAGAGTGAA 293 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 239 AAATTGCTTAGCAGAGGATACTCTGTTCACGCAGCTATTCGTAGAAACGGGGAGAGTGAA 298 Query 294 ATTGAGGAGATGATCAGAGAGATGGAAACAACAGAAGAGAGATTAGTGGTGTACGATGTA 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 ATTGAGGAGATGATCAGAGAGATGGAAACAACAGAAGAGAGATTAGTGGTGTACGATGTA 358 Query 354 GATGTGTTGGATTATCAAAGCATACTTGTCTCTCTCAAGACATGTAACGTTGTCTTCTGT 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GATGTGTTGGATTATCAAAGCATACTTGTCTCTCTCAAGACATGTAACGTTGTCTTCTGT 418 Query 414 TGCTTAGACAGCCCTGAAGGGTACGATGAGAAGGAGGTGGATTTGGAAGTGAGAGGAGCG 473 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TGCTTAGATAGCCCTGAAGGGTACGATGAGAAGGAGGTGGATTTGGAAGTGAGAGGAGCC 478 Query 474 ATCAATGTGGTGGAAGCGTGTGGAAGAACAGAGAGTATAGAGAAGATTGTGTTTTCTTCT 533 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 479 ATCAATGTGGTGGAAGCATGTGGAAGAACAGAGAGTATAGAGAAGATTGTGTTCTCTTCT 538 Query 534 TCATTAACAGCTTCAATTTGGAGAGACAACATTGGAACTCAAAAGGATGTTGATGAGAAG 593 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 539 TCGTTAACAGCTTCAATTTGGAGAGACAACATTGGAACTCAGAAGGATGTTGATGAGAAG 598 Query 594 TGTTGGAGTGACCAAGACTTCTGTCGCAGCAAGAAGTTGTGGCATGCACTGGCAAAGATG 653 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 599 TGTTGGAGTGACCAAGACTTCTGTCGCAACAAGAAGTTGTGGCATGCATTGGCAAAGATG 658 Query 654 TTGTCGGAGAAAGCAGCTTGGGCATTAGCCATGGACCGTAGGCTCAACATGGTCTCTATC 713 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 659 TTGTCAGAGAAAGCAGCTTGGGCATTAGCCATGGACCGTAGGCTCAATATGGTCTCTATC 718 Query 714 AACCCTGGTCTTGTCGTCGGACCATCTGTCGCACAACACAACGCTAGGCCCACCATGTCA 773 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 719 AACCCTGGTCTTATCGTCGGACCATCGGTCGCACAACACAACGCTAGGCCCACCATGTCA 778 Query 774 TACCTTAAAGGAGCTGCACAAATGTATGAGAATGGTGTGTTAGCTTATGTAGACGTTAAG 833 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 779 TACCTCAAAGGAGCTGCACAAATGTATGAGAATGGTGTGTTAGCGTACGTAGACGTTAAG 838 Query 834 TTTCTAGCGGACGTTCATATTAGAGCATTCGAGGATGTTTCAGCTTGCGGTCGATACTTC 893 ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 839 TTTTTAGCGGATGTTCATATTAGAGCATTCGAGGATGTTTCGGCTTGCGGTCGATATTTC 898 Query 894 TGCTTCAACCAAATCGTCAACACAGAAGAAGAAGCTCTCAAGCTAGTGGAGAGTTTGTCT 953 |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct 899 TGCTTCAACCAAATCGTCAACACAGAAGAAGAAGCTCTCAAGCTTGTGGAGCGCTTGTCT 958 Query 954 CCTTTGATTCCTATGCCACCGAGGTATGAGAATGAGATGCACGGAAGTGAAGTTTACGAA 1013 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CCTTTGATACCTATGCCACCGAGGTATGAGAATGAGATGCACGGAAGTGAAGTTTACGAA 1018 Query 1014 GAAAGATTAAGGAACAACAAATTAAGCAAGCTGGTAGAAGCTGGCTCTGCTTGTTAAAGA 1073 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 GAAAGATTAAGGAACAATAAATTAAGCAAGCTGGTAGAAGCTGGCTCTGCTTGTTAAAGA 1078 Query 1074 AAGATTTCACAATTTAAATTGAAAGA-GACGAGATTATACaaa-aa-aaaG--TTGTAAT 1128 ||||||||| ||||||||| ||| | || ||||||||||||| || |||| ||||||| Sbjct 1079 AAGATTTCATAATTTAAATCCAAA-ATGAAGAGATTATACAAACAAGAAAGGATTGTAAT 1137 Query 1129 TTGTATATTGATCTTCT-C--ATAGATGCATGTGTTG-CTTGTGAACTATTaaaaa 1180 ||||||||||||||||| | |||||||||||||||| | ||||||||| ||||| Sbjct 1138 TTGTATATTGATCTTCTTCTCATAGATGCATGTGTTGTCC-GTGAACTATCAAAAA 1192 Score = 209 bits (113), Expect = 4e-53 Identities = 138/149 (93%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 1223 TATATGAGTAGt-ttt-ttttttttGGCTGGGGGCACAATATGAATGTTTTCTAATTTTT 1280 |||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||| Sbjct 1193 TATATGAGTAGTCTTTCTTTTTTTTTGCTGGGGGCACAATATGAATG--CTCTAATTTTT 1250 Query 1281 GTTAAACATATT-AAATCTTGGTGGGAGAGTTGTCGTATACGAACCTTTTAAAGCGATGT 1339 |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1251 GTTAAACATATTAAAAAATTGGTGGGAGAGTTGTCGTATACGAACCTTATAAAGCGATGT 1310 Query 1340 TTCCTATAATTGTGCAATAATAATATGAA 1368 |||||||||||||||||||||| |||||| Sbjct 1311 TTCCTATAATTGTGCAATAATAGTATGAA 1339 > Ahg481248 jgi|Araly1|481248|fgenesh2_kg.4__308__AT2G23910.1 Length=1126 Score = 832 bits (450), Expect = 0.0 Identities = 768/922 (83%), Gaps = 20/922 (2%) Strand=Plus/Plus Query 159 ATGGATCACGACAAGTCTACTTCTTGTTGCTGCGTTCTTGATGCTTCCACTTATGTTGGT 218 ||| |||| || ||| | | |||||||||||| ||||||||||||||||||||||| ||| Sbjct 7 ATGAATCAAGAAAAGCCCATTTCTTGTTGCTGTGTTCTTGATGCTTCCACTTATGTGGGT 66 Query 219 TTCTGGATTCTCAAGAAATTGCTTAGC-AGAGGATACTCTGTTCACGCAGCGATTCGTAG 277 |||||||||||||||| |||||| | | ||||| ||||||||||||||||| || |||| Sbjct 67 TTCTGGATTCTCAAGAGATTGCTCA-CTAGAGGTTACTCTGTTCACGCAGCTATCCGTAA 125 Query 278 AAACGGGGAGAGTGAAATTGAGGA-GATGATCAGAGAGATGGAAAC-AACAGAAGAGAGA 335 ||||||||| |||| |||| || || || ||||| |||||| | || |||||||||| Sbjct 126 AAACGGGGATAGTGTGCTTGAAGAGGA-AATTAGAGACATGGAAGCTAA-AGAAGAGAGA 183 Query 336 TTAGTGGTGTACGATGTAGATGTGTTGGATTATCAAAGCATACTTGTCTCTCTCAAGACA 395 |||| ||| || ||||| |||||||| ||||| ||||| || || | |||||||| | | Sbjct 184 TTAGAGGTTTATGATGTGGATGTGTTAGATTACCAAAGTATCCTCATTTCTCTCAACA-A 242 Query 396 -TGTAACGTTGTCTTCTGTTGCTTAGACAGCCCTGAAGGGTACGAT---GAGAAGGAGGT 451 ||||| | ||| |||||||| || |||| ||||||||||| ||| |||||||| || Sbjct 243 TTGTAATGCTGTGTTCTGTTGTTTGGACAATCCTGAAGGGTATGATGAGGAGAAGGAAGT 302 Query 452 GGATTTGGAAGTGAGAGGAGCGATCAATGTGGTGGAAGCGTGTGGAAGAACAGAGAGTAT 511 ||||||||| ||||||||||| || |||||||||||||| |||| ||||||||||||||| Sbjct 303 GGATTTGGAGGTGAGAGGAGCTATTAATGTGGTGGAAGCATGTGCAAGAACAGAGAGTAT 362 Query 512 AGAGAAGATTGTGTTTTCTTCTTCATTAACAGCTTCAATTTGGAGAGACAACATTGGAAC 571 ||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||| Sbjct 363 AGAGAAGATTGTGTTCTCTTCTTCATTAACTGCTGCAATTTGGAGAGATAACATTGGAAC 422 Query 572 TCA-AAAGGATGTTGATGAGAAGTGTTGGAGTGACCAAGACTTCTGTCGCAGCAAGAAGT 630 || |||| ||||||||||||||||||||||||| | ||||| |||| | || |||| Sbjct 423 ACAGAAAG-ATGTTGATGAGAAGTGTTGGAGTGATCTTGACTTTTGTCTAAAAAAAAAGT 481 Query 631 TGTGGCATGCACTGGCAAAGATGTTGTCGGAGAAAGCAGCTTGGGCATTAGCCATGGACC 690 |||||||||| || || |||| ||| ||||| ||||| ||||||||||||||||| | Sbjct 482 TGTGGCATGCTCTTGCGAAGACACAGTCCGAGAAGGCAGCGTGGGCATTAGCCATGGATC 541 Query 691 GTA-GGCTCAACATGGTCTCTATCAACCCTGGTCTTGTCGTCGGACCATCTGTCGCACAA 749 ||| || |||||||||| || | ||||| || || |||| |||||||| || || | | Sbjct 542 GTATGG-TCAACATGGTTTCGGTTAACCCGGGCCTCATCGTTGGACCATCAGTGGCTCTA 600 Query 750 CACAACGCTAGGCCCACCATGTCATACCTTAAAGGAGCTGCACAAATGTATGAGAATGGT 809 |||||| |||| ||||| |||| ||||| |||| | ||||||| ||||||||||||||| Sbjct 601 CACAACCCTAGACCCAC--TGTCTTACCTCAAAG-ATCTGCACAGATGTATGAGAATGGT 657 Query 810 GTGTTAGCTTATGTAGACGTT-AAGTTTCTAGCGGACGTTCATATTAGAGCATTCGAGGA 868 |||||||| || ||||| ||| || ||| | ||||| ||||| ||| |||||||||| || Sbjct 658 GTGTTAGCATACGTAGATGTTGAA-TTTGTTGCGGATGTTCACATTCGAGCATTCGAAGA 716 Query 869 TGTTTCAGCTTGCGGTCGATACTTCTGCTTCAACCAAATCGTCAACACAGAAGAAGAAGC 928 | ||| ||||||||| ||||||| |||||||||||||| || || || ||||||||||| Sbjct 717 TACTTCGGCTTGCGGTAGATACTTTTGCTTCAACCAAATTGTGAATACGGAAGAAGAAGC 776 Query 929 TCTCAAGCTAGTGGAGAGTTTGTCTCCTTTGATTCCTATGCCACCGAGGTATGAGAATGA 988 |||||||| || | | | | |||||||| || ||||||||||| ||||||||||| || Sbjct 777 CCTCAAGCTTGTACAAACTCTATCTCCTTTAATACCTATGCCACCAAGGTATGAGAAAGA 836 Query 989 GATGCACGGAAGTGAAGTTTACGAAGAAAGATTAAGGAACAACAAATTAAGCAAGCTGGT 1048 |||||| |||||||||||||| ||||| ||||| || ||||| ||| ||| ||||||||| Sbjct 837 GATGCAAGGAAGTGAAGTTTATGAAGAGAGATTGAGAAACAAGAAACTAAACAAGCTGGT 896 Query 1049 AGAAGCTGGCTCTGCTTGTTAA 1070 |||||||| | |||||||||| Sbjct 897 GGAAGCTGGATTTGCTTGTTAA 918 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51618429618 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5