BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30530.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491698 jgi|Araly1|491698|fgenesh2_kg.7__1131__AT4G30530.1 1375 0.0
> Ahg491698 jgi|Araly1|491698|fgenesh2_kg.7__1131__AT4G30530.1
Length=945
Score = 1375 bits (744), Expect = 0.0
Identities = 890/956 (93%), Gaps = 27/956 (3%)
Strand=Plus/Plus
Query 65 aaaaaaaaTGGTGGAGCAAAAGAGATACGCTCTGTTTCTAGCGACTTTGGACTCAGAGTT 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAATGGTGGAGCAAAAAAGATACGCTCTGTTTCTAGCGACTTTGGACTCAGAGTT 60
Query 125 CGTGAAGAAAACTTACGGAGGATACCACAACGTGTTCGTGACGACGTTCGGAGACGAAGG 184
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 61 CGTGAAGAAAACTTACGGAGGATACCACAACGTGTTCGTGACAACGTTCGCAGACGAAGG 120
Query 185 AGAGCATTGGGACTCCTTTAGAGTCGTCAGCGGAGAGTTTCCTGACGAGAAAGATCTGGA 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 121 AGAGCATTGGGACTCCTTTAGAGTCGTCAGCGGTGAGTTTCCTGACGAGAAAGATCTTGA 180
Query 245 GAAATACGATGGCTTCGTTATCAGCGGAAGCTCTCACGATGCCTTTGAGAATGATGATTG 304
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 181 GAAATACGATGGCTTCGTTATCAGTGGAAGCTCTCACGATGCCTTTGAGAATCATGATTG 240
Query 305 GATCCTTAAGCTCTGTGATATTGTCAAGAAAATTGATGAGATGAAGAAGAAAATTCTTGG 364
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 241 GATCCTTAAGCTCTGTGATATCGTCAAGAAAATCGACGAGATGAAGAAGAAAATTCTTGG 300
Query 365 CATCTGCTTTGGTCATCAGATCATAGCCAGGGTAAGGGGAGGAACAGTCGGAAGAGCAAA 424
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATCTGTTTTGGTCATCAGATCATAGCCAGGGTAAGGGGAGGAACAGTCGGAAGAGCAA- 359
Query 425 GAA-GGGACCAGAACTTAAACTTGGAGACATAACCATCGTCAAGGATGCGATTACGCCTG 483
||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 360 GAAAGGGACCAGAACTAAAACTTGGAGACATAACCATCGTGAAGGATGCGATTACGCCGG 419
Query 484 GAAGTTACTTCGGAAACGAGATTCCTGATAGCATAGCGATCATCAAATGTCACCAGGACG 543
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 420 GAAGTTACTTCGGAAACGAGATTCCTGATAGCATGGCGATCATCAAATGCCACCAGGACG 479
Query 544 AAGTGTTGGTGCTGCCCGAAACTGCTAAAGTGCTTGCGTATTCCAAGAACTACGAGGTGG 603
| |||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| |
Sbjct 480 AGGTGTTGGTGCTGCCGGAAACTGCTAAAGTGCTAGCTTATTCCACCAACTACGAGGTAG 539
Query 604 AGATGTAT-TCGATTGAGGATCATTTGTTCTGTATCCAAGGACATCCTGAGTATAACAAA 662
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 AGATGT-TCTCGATTGAGGATCATTTGTTCTGTATTCAAGGACATCCTGAGTATAACAAA 598
Query 663 GAGATTCTCTTCGAGATTGTTGATCGTGTTCTTGCTCTAGGCTACGTCAAGCAAGAATTT 722
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 599 GAGATTCTCTTCGAGATTGTTGATCGTGTTCTTGCTCAAGGCTTCGTCAAGCAAGAATTT 658
Query 723 GCTGATGCGGCTAAGGCAACGATGGAGAATAGGGGAGCAGACAGGAAGCTTTGGGAGACG 782
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 659 GCTGATGCGGCTAAGGCAACGATGGAGAACAGGGGAGCAGACAGGAAGCTTTGGGAAACG 718
Query 783 ATTTGCAAGAACTTCCTCAAAGGCAGAGTTCCAACTAACTAGTTTCACTCCCAAATTATC 842
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 ATTTGCAAGAACTTCCTCAAAGGCAGAGTTCCAACTAACTAGTTTCACTTCCAAATTATC 778
Query 843 TATTTGGCTCTTGTCATATTGAAACAAT-TTG-TGGATTTATGATCTTGCTTTATTTTT- 899
||||||||||||||||||||| |||||| || ||||||||| |||||||||||||| |
Sbjct 779 TATTTGGCTCTTGTCATATTGGAACAATATTTATGGATTTATTATCTTGCTTTATTTCTG 838
Query 900 ATTCAATGTATAACGACATATTAATCTCGGCGTGACTTATTTGTGT-T-AT-A--CC-A- 952
|| || |||||||| || ||| |||||||||||||||||||||| | || | || |
Sbjct 839 AT-CATTGTATAACTT-AT-TTA-TCTCGGCGTGACTTATTTGTGTGTTATTATACCCAT 894
Query 953 GT----TGATAAATGAATAAGAAGAACCTAAGCTATTTAAAGCCATAATTGCAGTT 1004
| |||||||||||||||||||| | ||||||||| |||||||||| |||
Sbjct 895 GGGCCATGATAAATGAATAAGAAGAA---A--CTATTTAAAACCATAATTGCTGTT 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5