BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30690.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491684 jgi|Araly1|491684|fgenesh2_kg.7__1117__AT4G30690.1 1511 0.0
> Ahg491684 jgi|Araly1|491684|fgenesh2_kg.7__1117__AT4G30690.1
Length=1044
Score = 1511 bits (818), Expect = 0.0
Identities = 953/1014 (94%), Gaps = 25/1014 (2%)
Strand=Plus/Plus
Query 50 GAAGCAAATGGCTGGGATCACCAGCACCGTTGGATTCAACGCCATTCTCGCCGGAGCCAC 109
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 33 GAAGCAAATGGCTGGTATCACCATCACCGTCGGATTCAACGCCATTCTCGCCGGAGCCAC 92
Query 110 CAAAACGGTGTCGCA----T----C-CTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTG 160
||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 93 CAAAACGGTGTCGCATCCTTCACCCTCTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTG 152
Query 161 TGTACCCGAATTCTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGTCCCGCCAT 220
| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 153 TCTGGCCGAATTGTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGCCCCGCCAT 212
Query 221 CACTTGCCGTTACGGAGGCGGTGGTGGC---GGAGGC------TCTAGATTTCCCGGCGA 271
||| ||||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 213 CACCTGCCGCTACGGAGGCGGTGGTGGCGGAGGAGGCGGAGGGTCTAGATTTCCCGGCGA 272
Query 272 TAGGAGAGGTAGGCAGAAAGAATCCGA-G--GATGATGATTCGCTTGATATCTCAGCTAT 328
||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 273 TAGGAGAGGTAGGCAAAAAGAATCCGAGGATGATGATGATTCGCTTGATATCTCAGCTAT 332
Query 329 TAGGTCAGCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAA 388
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TAGGTCACCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAA 392
Query 389 AGAAGAAGCTGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGA 448
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AGACGAAGCGGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGA 452
Query 449 TGCAGATCCTCCGGTTGTTAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAA 508
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGCAGATCCTCCGGTTGTCAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAA 512
Query 509 GAGGAAAAAGGAACAGCAGAAGAAAACTACTCGAATGGACTTGAAGGAGCTTAAAATGGG 568
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 513 GAGGAAAAAGGAACAGCAGAAGAAAACTACTCGCATGGACTTGAAGGAGCTTAAAATGGG 572
Query 569 TTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAGTTCTTGCA 628
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 573 TTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAATTCTTGCA 632
Query 629 AGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAA 692
Query 689 TATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTG-GTACTGAGG 747
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 693 TATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTGCG-ACTGAGG 751
Query 748 AGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTGTCTTGGTGCCAAACAAGGAAGTTA 807
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 752 AGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTACCTTGGTGCCAAACAAAGAAGTTA 811
Query 808 TTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATAAAGTTT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 812 TTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATGAAGTTT 871
Query 868 CAGCAGCAAATATAACTGCAACACAAGATATATGATGCGGAATTGTCTGATGTAAAATGT 927
|||| ||| |||||||||||| ||||||| |||||| ||||||||||||| | ||||||
Sbjct 872 CAGCGGCAGGTATAACTGCAACGCAAGATACATGATGTGGAATTGTCTGATATCAAATGT 931
Query 928 TCTGTGACTTTGATAAATTTCTGTATAGTTTCTTTTTTAATATGCTTCTTGCATTTCCAT 987
|| | || |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
Sbjct 932 TCAGGGAGTTTGATAAATTTCTGTATAGTTCCTTTTCTAATATGCTTCCTGCATTTCCTT 991
Query 988 GTAAT-TGTAACCATAGAAATAGATTATTTGAATGAAGATCTTCGTCAACTTTT 1040
||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GTA-TCTGTAACCATAGAAATAGATTATTTGAATGAAGATCTTCGTCAACTTTT 1044
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 TTAAATCGGATCATTCTAATTGGTGGAGAGAC 32
||||||||||||||||||||||||||||||||
Sbjct 1 TTAAATCGGATCATTCTAATTGGTGGAGAGAC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5