BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30720.1 Length=2488 Score E Sequences producing significant alignments: (Bits) Value Ahg491679 jgi|Araly1|491679|fgenesh2_kg.7__1112__AT4G30720.1 3611 0.0 > Ahg491679 jgi|Araly1|491679|fgenesh2_kg.7__1112__AT4G30720.1 Length=2345 Score = 3611 bits (1955), Expect = 0.0 Identities = 2104/2176 (97%), Gaps = 9/2176 (0%) Strand=Plus/Plus Query 21 CACAGAGACGAGCTTTTTAGTTTGAGCTCTCTCTCACTATGTCTCTCTCGCAAACGAATT 80 ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 CACAGAGACAAGCTTTTTAGTTTGAG----CTCTCACTATGTCTCTCTCGCAAACGAATT 56 Query 81 TCCTCAGTTCTTCATTACTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGCGG 140 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 57 TCCTCAGTTCTTCATTTCTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGAGG 116 Query 141 TACTTTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCGAAGCGAACCGGGA 200 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 117 TACTCTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCCAAGCGAACCGGGA 176 Query 201 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCTA 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 177 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCCA 236 Query 261 AGGTTAAGAACAAGCTTGAAGGAGTTTGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 320 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 237 AGGTTAAGAACAAGCTCGAAGGAGTATGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 296 Query 321 ATGACCCTGGAAAGGACTTTCTCGGGATTTCAGAAGGTTTGCTTCAAGCCATCGCTAAAG 380 |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 297 ATGACCCTGGAAAGGATTTTCTCGGAATTTCCGAAGGTTTGCTTCAAGCCATCGCTAAAG 356 Query 381 TTATCGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 440 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TTATTGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 416 Query 441 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTTTACACTGTGGATTTGGATG 500 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 417 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTGTATACTGTGGATTTGGATG 476 Query 501 TGAAGACGCTCCTTGAGTTAGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTA 560 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 477 TGAAGACGCTTCTTGAGTTGGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTG 536 Query 561 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 596 Query 621 TGGTGAATGACTGTAAAAGGATCAACAGTGAGACAGCATCCGGAGAATATGAACCTCAGA 680 ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 597 TGGTGAACGACTGTAAAAGGATCAACAGTGAGACATCATCCGGAGAACATGAACCTCAGA 656 Query 681 TTATCAATGGCTCTGGAGATCCACACCATCATGGAGGAGGACGAAGCAAACCGAAAATTG 740 |||||||||||||||||||||||||||| | | ||||||||||||||||||||||| | Sbjct 657 TTATCAATGGCTCTGGAGATCCACACCAGC---GTGGAGGACGAAGCAAACCGAAAATCG 713 Query 741 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCTGCTCTTGTACTTGCAGAGTTCGGTG 800 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 714 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCAGCTCTTGTTCTTGCAGAGTTCGGTG 773 Query 801 CAGATGTGACATTGATTGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATAGGCG 860 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 774 CAGATGTGACATTGATAGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATCGGCG 833 Query 861 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 893 Query 921 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTC 980 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTT 953 Query 981 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGGGCTCCTGATAATATATTGGTCAACGGAA 1040 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 954 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGTGCTCCTGATAATATATTGGTCAACGGAA 1013 Query 1041 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1073 Query 1101 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1133 Query 1161 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAAACCAATTGCAGACTACCTCCCAGA 1220 ||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| Sbjct 1134 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAGACCAATTGCAGAGTACTTCCCAGA 1193 Query 1221 ATTTAAAGGTTGATGCAGTTGTTCTTGCAGTTGGTCATTCAGCACGTGACACATATGAGA 1280 |||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1194 ATTTAAAGTTTGATGCAGTTGTTCTTGCGGTTGGTCACTCAGCACGTGACACATATGAGA 1253 Query 1281 TGCTTCATTCTCGTAATGTCGAATTGATTCCAAAAGATTTTGCTGTTGGTTTGCGTATTG 1340 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||| Sbjct 1254 TGCTTTATTCTCGTAATGTTGAATTGACCCCAAAAGATTTTGCTGTTGGTTTGCGCATTG 1313 Query 1341 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGCTAA-TGAAGTTCTT 1399 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1314 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGC-AAGTGAAGTTCTT 1372 Query 1400 AAAGGGCGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1459 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 AAAGGACGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1432 Query 1460 ACCGAGGATCTCTCGCAGTCTTCATCGAAACGCAGTTGCTACTCCTTCTGCATGTGTCCT 1519 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1433 GCCGAGGATCTCTCGCAGTCTTCATCAAAACGTAGTTGCTACTCCTTCTGCATGTGTCCT 1492 Query 1520 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1552 Query 1580 TTTTCTCGCCGTTCATCCAAATGGGCCAATGCTGCACTCGTCGTTACAGTCTCAGCAAAA 1639 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1553 TTTTCTCGCCGTTCTTCCAAATGGGCCAATGCTGCACTCGTCGTCACAGTATCAGCAAAA 1612 Query 1640 GATTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAATTT 1699 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1613 GACTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAGTTT 1672 Query 1700 GAAAGAAGAGCAGCCATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1759 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 GAAAGAAGAGCGGCTATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1732 Query 1760 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1733 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1792 Query 1820 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTGCTCATATCACAGAGGCTCTGCGAGAG 1879 ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| || Sbjct 1793 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTACTCATATTACAGAGTCTCTGCGACAG 1852 Query 1880 TCTATCTCTATGTTTGAAAAGGAGTTACCGGGATTCATCTCAGAGGAAGCACTCCTCCAC 1939 |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 1853 TCTATCTCTATGTTTGAAAAAGAGTTGCCAGGATTCATCTCAGAGGAAGCACTCCTCCAT 1912 Query 1940 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1999 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1913 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1972 Query 2000 AGTACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGAATT 2059 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1973 AGCACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGCATT 2032 Query 2060 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2033 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2092 Query 2120 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTAAAGTAC 2179 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2093 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTGAAGTAC 2152 Query 2180 tgatgatgctgatgat 2195 |||||||| ||||||| Sbjct 2153 TGATGATGATGATGAT 2168 Score = 198 bits (107), Expect = 1e-49 Identities = 162/186 (87%), Gaps = 13/186 (7%) Strand=Plus/Plus Query 2250 TTGTCGAGGTAAAAGAACATCAAGGGGGACTG----CTCCAAAATCCAGTTTTGTTGTAC 2305 |||| |||||||||||||||||| |||||||| ||||| ||| |||||||||||||| Sbjct 2168 TTGTTGAGGTAAAAGAACATCAATGGGGACTGCTTCCTCCAGAATTCAGTTTTGTTGTAC 2227 Query 2306 CATAGCTCAAGGACTTATACAG-AAAAGGCCCAAATCAGAAGCGGGAAGGAATCGTCATC 2364 || |||| ||| || ||||||| ||||||| | |||||||||| | |||| | |||| Sbjct 2228 CAAAGCTTAAGAACCTATACAGAAAAAGGCTC-AATCAGAAGC--G--GGAA-C--CATC 2279 Query 2365 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTACTGAAGA 2424 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2280 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTAGTTAAGA 2339 Query 2425 AAGTAA 2430 |||||| Sbjct 2340 AAGTAA 2345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93778183190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5