BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31000.1
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353717 jgi|Araly1|353717|fgenesh1_pg.C_scaffold_7000890 2549 0.0
Ahg481287 jgi|Araly1|481287|fgenesh2_kg.4__347__AT2G24300.2 1090 0.0
> Ahg353717 jgi|Araly1|353717|fgenesh1_pg.C_scaffold_7000890
Length=1671
Score = 2549 bits (1380), Expect = 0.0
Identities = 1590/1690 (94%), Gaps = 20/1690 (1%)
Strand=Plus/Plus
Query 244 ATGGAAAATTCTATGAACAACAGAGGACATGGACACAATCAAGAACATGCAGACAACTTG 303
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAATTCCATGAACAAGAGAGGACATGGACACAATCAAGAACATGCAGACAACTTG 60
Query 304 CCAGAATCAAAGAGACAGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAG 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGAACCAAAGAGACAGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAG 120
Query 364 GTAGATAGTCTGCAGAGGCTATGCTCGTCTTTGGAACCATTATTTCGAAGAATTGTCAGT 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTAGATAGTCTGCAGAGGCTTTGCTCGTCTTTGGAACCATTATTTCGAAGAATTGTCAGT 180
Query 424 GAAGAGGTGGAACGTGCCATATCAAGGTTGGAGAACTCGAAATCTACTTCAAGATCTACA 483
|||||||||||||||||| |||| || ||||||||||||||||||| |||||||||| ||
Sbjct 181 GAAGAGGTGGAACGTGCCTTATCGAGATTGGAGAACTCGAAATCTATTTCAAGATCTCCA 240
Query 484 GAACCGAATAAGATTCAAGGCCTCGATGGAAGAAATCTGCAACTTCGGTTCAGAACACGA 543
|||||||| |||| ||||||||| ||||||||||| |||||| |||| ||||||||||||
Sbjct 241 GAACCGAAGAAGAATCAAGGCCTTGATGGAAGAAACCTGCAAATTCGCTTCAGAACACGA 300
Query 544 ATGCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCAC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCAC 360
Query 604 GTGGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGAGAAGAATCAATGACA 663
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 361 GTGGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGACAAGAATCAATGGCA 420
Query 664 AAGCTGAATATTGTCGTGTTAGATGGAGACTTCAATGATGAAGACGACAAAGATTGGACG 723
||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 421 AAGCTGAGTATTGTCGTCTTAGATGGAGACTTCAATGATGATGACGACGAAGATTGGACG 480
Query 724 AGAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGAAAACGTCCCATCTTGACT 783
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 481 AGAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGGAAACATCCCATCTTGACT 540
Query 784 GGTGACAGACATGTGATAATTAAAGAAGGTGTAGGAACTCTTGGAAAACTTACTTTCACT 843
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGACAGACATGTGATACTTAAAGAAGGTGTAGGAACTCTTGGAAAACTTACTTTCACT 600
Query 844 GACAATTCGAGCTGGATTAGGAGCAGAAAGTTTAGACTTGGTGTTAAGCCTGCAACGGGA 903
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 601 GACAATTCGAGCTGGATTAGGAGCAGAAAGTTTAGACTTGGTGTTAAGGCTGCATCGGGG 660
Query 904 TTTCACATCCGTGAAGCTAAAACAGAACCATTTGCTGTTAAAGATCACAGAGGAGAACTA 963
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 TTTCACATACGTGAAGCTAAAACAGAGCCATTTGCTGTTAAAGATCACAGAGGAGAACTA 720
Query 964 TACAAGAAACATTATCCACCGGTTTTACATGATGAAGTCTGGAGATTGGATAAAATAGCG 1023
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 TACAAGAAACATTATCCACCGGCTTTACATGATGAAGTCTGGAGATTGGATAAAATAGCG 780
Query 1024 AAAGATGGAGCGCTACACAAGAAGCTACTAAAATCTAACATTGTGACTGTTGAAGACTTC 1083
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 781 AAAGATGGAGTGCTACACAAGAAGCTACTAAAATCTAACATCGTGACTGTTAAAGACTTC 840
Query 1084 CTACAGATACTCATGAAGGATCCGCAGAAACTAAGAAGCTTACTTGGGAGTGGAATGTCA 1143
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 841 CTACGGATACTCATGAAGGATCCGCAGAAACTAAGAAGTTTGCTTGGGAGTGGAATGTCA 900
Query 1144 AATAGAATGTGGGATAACACGGTAGAGCACGCAAAGACTTGTGTCTTAGGTGGGAAACTT 1203
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 901 AATAGAATGTGGGATAACACGGTGGAGCACGCAAAGACCTGTGTATTAGGTGGGAAACTT 960
Query 1204 TACGCCTATTACACAGATCAAACACACCAGACAGCTGTTGTCTTTAATCATATATATGAA 1263
|||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 961 TACGTCTATTACACAGATCAAACACACGAGACCGGTGTTGTCTTTAATCATATATATGAC 1020
Query 1264 TTTCAAGGCCTAATTGCCAATGGCCACTTCTTGTCT-TCGGAATCTCTTAACCATGACCA 1322
|| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||
Sbjct 1021 TTCCAAGGCCTAATTGCCAATGGCCACTTCTTATCTCT-GGAATCTCTTAACCATGATCA 1079
Query 1323 AAAGATTTCTGCAGACACTTTGGTGAAGACTGCTTACGAGAACTGGCATAAAGTGGTTGA 1382
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AAAGATTTCTGCAGACATTTTGGTGAAGACAGCTTACGAGAACTGGCATAAAGTGGTTGA 1139
Query 1383 GTATGGCGGTAAGCTCTTGAATTGCTTACCAGTTGCTAAGAAGGGAATAAAAAGCTTGCC 1442
||||| ||||||||| |||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1140 GTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCTAAGAATGAAATAAAAA--TTGC- 1196
Query 1443 AGAGCCAAAAATGGCTCAGAACCATCAAACGCAGCAGAAGGCTCTGCAATGCCAACAGAC 1502
| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1197 -----------T--C--AGAACCATCAAACGCAGCAGAAGACTCTGCAATGCCAACAGAC 1241
Query 1503 TGTGAATGGCTACTCATCAGATCCTCAGCATCTGATAGAGTATCCTTTTGTCCAACAACC 1562
|| |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct 1242 TGCGAATGGCTACTCATGGGTTCCTCAGCATCTGATAGAGTATCCTTTAGTCCAACAACC 1301
Query 1563 TTGCTATCAGTTACGAGACTACACATCGATGGAGAGTTCTTCAGTTTCAGGCTCATATAA 1622
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1302 TTGCAATCAGTTACGAGACTACACATCGATGGAGAGTTCTTTGGTTTCGGGCTCATACAA 1361
Query 1623 TGGAGGCCTTGAAGATATTTTCACGGAGGAAATTCGAGCGAGGAGTTCTGAGATGCTCGA 1682
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1362 TGGAGGCCTTGAAGATATTTTTACGGAGGAAATTCGAGCGAGGAGTTCTGAGATGCTGGA 1421
Query 1683 GACGGATAACATGCAGAGATTGCTCAAGACATTTGGGATATCAGGCGGGTTTGGTAACAG 1742
||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 1422 GACCGATGACATGCAGAGATTGCTGAAGACATTTGGGATATCAGGCAGGTTTGGTCACAG 1481
Query 1743 GGATGAGTCCATTTACGGTTTCAGTGATCAGTACGAAGCTCAGATAGACAAGGGTTATAT 1802
|||||||| || ||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 1482 GGATGAGTTCAGTTACGGTTTCAGTGATCGGTATGAAGCTCAGATAGATAAGGGTTATAG 1541
Query 1803 GAGAGAAGGAGGTAGAGGCGCAGGGAAAGCTGTAGTGGGATGGCTTAAGCTCAAAGCTGC 1862
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1542 GAGAGAAGGAGGTCGAGGCGCAGGGAAAGCTGTAGTGGGATGGCTTAAGCTTAAAGCTGC 1601
Query 1863 ATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAGGAGGCCTCAAATTGTGGA 1922
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1602 ATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAGGAGGCCTCAGATTGTGGA 1661
Query 1923 GATCGACTAA 1932
||||||||||
Sbjct 1662 GATCGACTAA 1671
> Ahg481287 jgi|Araly1|481287|fgenesh2_kg.4__347__AT2G24300.2
Length=1954
Score = 1090 bits (590), Expect = 0.0
Identities = 1032/1240 (83%), Gaps = 51/1240 (4%)
Strand=Plus/Plus
Query 252 TTCTATGAACAA-CAGAGGACATGGACACAATCAAGAACATGCAGACAACTTGCCAGAAT 310
||| |||||||| | ||||| | | | || |||||| || ||||||| ||||||||||
Sbjct 2 TTCCATGAACAAGC-GAGGATACGAATGCAGTCAAGAGGATACAGACAAGTTGCCAGAAT 60
Query 311 CAAAGAGAC-AGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAGGTAGAT 369
||||||||| | ||| | ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 61 CAAAGAGACAAAAAG-TGCCTGCTTTGGCAAGTGTTATTGTGGAAGCTGTTAAGGTAGAT 119
Query 370 AGTCTGCAGAGGCTATGCTCGTCTTTGGAACCATTATTTCGA-AGAATTGTCAGTGAAGA 428
|||||||||||||| |||||||||||||| || || |||| | |||||||| ||||||||
Sbjct 120 AGTCTGCAGAGGCTTTGCTCGTCTTTGGAGCCGTTGTTTC-ACAGAATTGTTAGTGAAGA 178
Query 429 GGTGGAACGTGCCATATCAAGGTTGGAGAACT-CGAAA-TCTA-CTTCAAGATCTAC-AG 484
||||||||| ||| |||||||||||| ||| | | ||| | || | || || || || ||
Sbjct 179 GGTGGAACGAGCCTTATCAAGGTTGG-GAAATGC-AAAGT-TAACATCGAGGTC-ACCAG 234
Query 485 AACCGAATAAGATTCAAGGCCTCGATGGAAGAAATCTGCAACTTCGGTTCAGAACACGAA 544
|||| || | ||| |||| || |||||||||||| || ||||||| || || || ||||
Sbjct 235 AACCAAAGAGGATCCAAGACCGCGATGGAAGAAACCTACAACTTCACTTTAGGACGCGAA 294
Query 545 TGCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCACG 604
|||||||||| ||||||||||||||||||||||||||||||| |||||| || ||||| |
Sbjct 295 TGCCTCCTCACTTATTCACAGGTGGGAAAGTCGAGGGAGAGCGAGGCTCGGCAATTCATG 354
Query 605 TGGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGAGAAGAATCAA-TGACA 663
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||| | ||
Sbjct 355 TGGTTCTTATAGATGCAAACACAGGAAATGTAGTCCAAACAGGAGAAGAGTCAGCTT-CA 413
Query 664 AAGCTGAATATTGTCGTGTTAGATGGAGACTTCAATGATGAAGACGACAAAGATTGGACG 723
||||||||| |||| |||||||| || |||||||||||||||||||| |||| ||||||
Sbjct 414 AAGCTGAATGTTGTAGTGTTAGAGGGTGACTTCAATGATGAAGACGATGAAGACTGGACG 473
Query 724 AGAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGAAAACGTCCCATCTTGACT 783
||||| || |||||||||||||||||||| || || ||||| ||||| ||||| || |||
Sbjct 474 AGAGAGCACTTTGAGAGCTTTGAAGTGAAAGAGCGAGAAGGGAAACGCCCCATTTTAACT 533
Query 784 GGTGACAGACATG-T-GATAATTAAAGAAGGTGTAGGAACTCTT-GGAAAACTTACTTTC 840
|| |||| ||| | | | | |||| |||||||| |||||| || ||| |||||||||||
Sbjct 534 GGGGACACACA-GATAG-TGCTTAAGGAAGGTGTGGGAACT-TTAGGAGAACTTACTTTC 590
Query 841 ACTGACAATTCGAGCTGGATTA-GGAGCAGAAAGTTTAGACTTGGTGTTAAGCC---TGC 896
|||||||| ||||| ||||| | ||||| |||||||||| |||||||||||||| |||
Sbjct 591 ACTGACAACTCGAGTTGGAT-ACGGAGCCGAAAGTTTAGGCTTGGTGTTAAGCCGGCTGC 649
Query 897 AACG-G-G---AT---TTCA-CATCCGTGAAGCTAAAACAGAACCATTTGCTGTTAAAGA 947
| | | | || || ||| |||||||| ||||||||||| |||||||| |||||
Sbjct 650 AGGGTGTGGTGATAGCTTTTGCATTCGTGAAGCCAAAACAGAACCTTTTGCTGTCAAAGA 709
Query 948 TCACAGAGGAGAACTATACAAGAAACATTATCCACCGGTTTTACATGATGAAGTCTGGAG 1007
||| ||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 710 TCATAGAGGAGAATTATACAAGAAACATTATCCACCGGCTGTACACGATGAAGTCTGGAG 769
Query 1008 ATTGGATAAAATAGCGAAAGATGGAGCGCTACACAAGAAGCTACTAAAATCTAACATTGT 1067
| |||||| |||||||||||| |||| |||||||||||| ||| | ||| |||| || ||
Sbjct 770 ACTGGATAGAATAGCGAAAGACGGAGTGCTACACAAGAAACTATTGAAAGCTAATATCGT 829
Query 1068 GACTGTTGAAGACTTCCTACAGA-TACTCATGAAGGATCCGCAGAAACTAAGAAGCTTAC 1126
||| || ||||||||||| | || | || | |||||||| ||||| || |||| || |
Sbjct 830 GACAGTCGAAGACTTCCTTC-GACTCCTTGTTAAGGATCCACAGAAGCTGAGAAATTTGC 888
Query 1127 TTGGGAGTGGAATGTCAAATAGAATGTGGGATAACACGGTAGAGCACGCAAAGACTTGTG 1186
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 889 TTGGGAGTGGAATGTCGAATAGAATGTGGGAGAACACGGTGGAGCACGCAAAGACATGTG 948
Query 1187 TCTTAGGTGGGAAACTTTACGCCTATTACACAGATCAAACACAC-CAGACAG-CTGTTGT 1244
| || |||||||| ||| | | | ||||||||| || || ||| | |||| | |||||
Sbjct 949 TGTTGGGTGGGAAGCTTCATGTGTTTTACACAGACCAGACTCACGCT-ACAGGC-GTTGT 1006
Query 1245 CTTTAATCATATATATGAATTTCAAGGCCTAATTGCCAATGGCCACTTCTTGTCT-TCGG 1303
||| || ||||| |||||||| | |||||||||| | || || || ||| | || | |
Sbjct 1007 CTTCAACCATATCTATGAATTCCGAGGCCTAATTACAAACGGGCATTTCCTATCGCTAG- 1065
Query 1304 AATCTCTTAACCATGACCAAAAGATTTCTGCAGACACTTTGGTGAAGACTG-CTTACGAG 1362
| ||||| |||||||||||||||||||||||||| | |||||| ||| ||| ||||||||
Sbjct 1066 AGTCTCTCAACCATGACCAAAAGATTTCTGCAGATATTTTGGTCAAG-CTGGCTTACGAG 1124
Query 1363 AACTGGCATAAAG-TGGTTGAGTATGGCGGTAAGCTCTTGAATTGCTTACCAGTTGCTAA 1421
||||||||||||| | ||||||| | ||||||||| || ||||||||||||||||| |
Sbjct 1125 AACTGGCATAAAGCTA-TTGAGTACGACGGTAAGCTGTTAAATTGCTTACCAGTTGCCGA 1183
Query 1422 GAAGGGAA-TAAAAAGCTTGCCAGAGCCAAAAATGGCTCA 1460
||||| || |||||||||| ||||| |||||||||| |||
Sbjct 1184 GAAGG-AAGTAAAAAGCTTACCAGAACCAAAAATGG-TCA 1221
Score = 156 bits (84), Expect = 7e-37
Identities = 170/210 (81%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 1725 AGGCGGGTTTGGTAACAGGGATGAGTCCAT-TTACGGTT-TCAGTGAT-CAGTACGAAGC 1781
||| ||||||||| | | ||||||| | | |||||||| | | || | |||| ||||
Sbjct 1598 AGGTGGGTTTGGTCAGACTGATGAGT-CTTGTTACGGTTAT-A-ACATACCGTACCAAGC 1654
Query 1782 TCAGATAGACAA-GGGTTATATGAGAGAA-GGAGGTAGAGGCGCAGGG-AAAGCTGTAGT 1838
|||||| || || ||| | || |||| | | |||||| | ||| |||||||| ||
Sbjct 1655 TCAGATCGATAACACGTT-CAGGACAGAACGTA-ACAGAGGCTC-GGGAAAAGCTGTGGT 1711
Query 1839 GGGATGGCTTAAGCTCAAAGCTGCATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGC 1898
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1712 TGGATGGCTAAAGCTTAAAGCTGCTTTGAGATGGGGTATCTTCATACGCAAGAAAGCTGC 1771
Query 1899 AGAGAGGAGGCCTCAAATTGTGGAGATCGA 1928
||||||||||||||| ||||||||||||||
Sbjct 1772 AGAGAGGAGGCCTCAGATTGTGGAGATCGA 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79456251070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5