BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31060.1 Length=1372 Score E Sequences producing significant alignments: (Bits) Value Ahg944876 jgi|Araly1|944876|scaffold_701105.1 974 0.0 > Ahg944876 jgi|Araly1|944876|scaffold_701105.1 Length=605 Score = 974 bits (527), Expect = 0.0 Identities = 578/603 (96%), Gaps = 1/603 (0%) Strand=Plus/Plus Query 494 TGCTTCTGTTA-GGATATAATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTC 552 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3 TGCTTCTGTTAGGGATATAATGCCACCCTCTCCTCCTAAATCTCCTTTTATGAGCTCTTC 62 Query 553 ACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGTC 612 ||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 63 ACTGAAAGAAGCTCATGAAGATAGCAGATTTAAATGCTATAGGGGTGTCCGAAAGAGGTC 122 Query 613 TTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGG 672 |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 123 GTGGGGCAAGTGGGTGTCTGAAATCAGAGTTCCAAAGACTGGAAGACGAATATGGCTAGG 182 Query 673 TTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGATGCTGCTTTGTTCTGTATTAG 732 |||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 183 TTCATACGATGCTCCAGAGAAGGCAGCTCGAGCCTATGATGCTGCTCTGTTTTGTATTAG 242 Query 733 GGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTC 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 GGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTC 302 Query 793 TGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGT 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 TGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGT 362 Query 853 TGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAGT 912 ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 363 TGTGCATGTACCTCCCCATGCCACCACACTCCCGGTAACAGCCCAGGTTCCCTCTGAAGT 422 Query 913 TCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTA 972 |||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 423 TCCTACTTCCCCTGATGTATCTGCTTCTACTGAGATTACAGAGATAGTCGATGAATATTA 482 Query 973 TCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGTTGAAGACTTACAACTGGACAG 1032 ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| Sbjct 483 TCTCCCAACCGATGCAAGTGCAGAATCAATATTCTCAGTAGAAGACTTGCAACTGGACAA 542 Query 1033 TTTCCTCATGATGGACATTGATTGGATAAACAATCTAATCTGATGTGTAACGTCACTTGC 1092 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 543 TTTCCTCATGATGGACATTGATTGGATAAACAATCTAGTCTGATGTGTGACGTCACTTGC 602 Query 1093 AGT 1095 ||| Sbjct 603 AGT 605 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51351569199 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5