BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31080.2
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491637 jgi|Araly1|491637|fgenesh2_kg.7__1070__AT4G31080.1 1262 0.0
> Ahg491637 jgi|Araly1|491637|fgenesh2_kg.7__1070__AT4G31080.1
Length=1673
Score = 1262 bits (683), Expect = 0.0
Identities = 855/934 (92%), Gaps = 27/934 (3%)
Strand=Plus/Plus
Query 853 CAGAGATATGACCCGGACCCAGCTGCAAAGGCAGCTGCCGCAACTGTCCTGGCATCCAAA 912
|||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||
Sbjct 760 CAGAGATATGACCCCGACCCAGCGGCAAAAGCAGCTGCTGCAACTGTTCTGGCATCCAAA 819
Query 913 TTGGGTGCCGATTCAGGCTTGAAAGTATATTTAGGAGATGAATCCCAACTCGATCCATCC 972
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 820 TTGGGTGCCGATTCAGGCTTGAAAGTATTTTTAGGAGATGAATCCCAACTAGATCCATCC 879
Query 973 TCGGGCAAGAGCAATGACATGGAGGTTAACCAATCACGTGGGTTGAGGAATCGAAGGCAA 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 880 TCGGGCAAGAGCAATGACATGGAGGTTAACCAATCACGTGGGTTGAGGAATCGAAGACAA 939
Query 1033 CCAAATACAAGACCCCACGGTTCTGGGAGCACTTCAACACATCATTCTGATGATGAGTCT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CCAAATACAAGACCCCACGGTTCTGGGAGCACTTCAACACATCATTCTGATGATGAGTCT 999
Query 1093 CACCATTCTGGAACAAGCGAGAGATTTCCAGGCACCACAGAGCAAAACCAGCAGATGTTG 1152
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1000 CACCATTCTGGAACAAGCGAGAGATTTCCAGGCGCCACAGAGCAAAACCAGCAGATGTTG 1059
Query 1153 GTTGAGCATTACAGCCCTCAGGGATATGCTGCTCATGATGGCAGTTGGATCTCACGCATT 1212
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1060 GTTGAGCATTACAGCCCTCAGGGATATGCTGCTCACGATGGCAGTTGGATCTCACGCATT 1119
Query 1213 GCGGCTCTACTTGTGGGCGAAGATCCCACACAATCATATGCGCTCATTTGTGGAAACTGT 1272
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1120 GCAGCTCTACTTGTGGGCGAAGATCCCACACAATCATATGCACTCATTTGTGGAAACTGT 1179
Query 1273 CGTATGCACAATGGACTTGCTCGGAAAGAGGATTTTGCTTACATTACATACTATTGCCCT 1332
| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1180 CATATGCATAATGGACTTGCTCGGAAAGAGGATTTTGCATACATTACATACTATTGCCCT 1239
Query 1333 CACTGTAATGCTCTGAACAAACCGAAGCATTCAGAGGAGAATGTACTTCTTCCTGCTATT 1392
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||
Sbjct 1240 CACTGTAATGCTCTGAACAAACCGAAGCATACAGAGGAGAACGCACTTCTTCCTGCTGTT 1299
Query 1393 TCCGCTTCACCAATCACAGACTCTCTGCCACTGATTGAGACCAGCGAAGTGGTTAATAGC 1452
|| ||||| || |||| |||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 1300 TCTGCTTCGCCGATCATAGACTCACTGCCATTGATTGAAACCAGCGAAGTGGTTAATAGC 1359
Query 1453 AGCAGCTCGAGTAGTGAACGTGGAAGTAGCCCCACTCCAGAAATAAAAGAGGAAGCTGCA 1512
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1360 AGCAGCTCGAGTAGTGAACGTGGAAATAGCCCCGCTCCAGAAATAAAAGAGGAAGCTGTG 1419
Query 1513 ATTACTGAGACCGGGACACCGAGCTGAGGAAGATCCAGTGAGCTAA-GAAGAAGGCTTAG 1571
| | |||||||||||||| | ||||||||||||| ||||||||||| |||||||||||
Sbjct 1420 ACTGCTGAGACCGGGACAGCTAGCTGAGGAAGATTCAGTGAGCTAAAGAAGAAGGCTTTC 1479
Query 1572 TCGTGTTGGTGCTACAGAGAAGAGATTTTGTGTGTGCATGTGTGTTTGTGGATGCGAGTA 1631
| |||||| || ||| || |||||| ||||||||| ||||||||||||||||||||||
Sbjct 1480 TTGTGTTGCTGTTACGGAAAAGAGAGATTGTGTGTGTGTGTGTGTTTGTGGATGCGAGTA 1539
Query 1632 CTCATTCAGGTAATCTTATGCTATGGATTGCTAATATATGAAGGTGCTTACAGTTTTGAT 1691
||| ||||||||||||||||||| || || | | ||||||||
Sbjct 1540 CTCGTTCAGGTAATCTTATGCTA-------CT--TA----------C--A--GTTTTGAT 1576
Query 1692 TCTGGTTTGTTTCTATACAACAAGACAATAGGGTTTTGGTGGGTAAATATGCGATTCT-A 1750
| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1577 TTTGGTCTGTTTCTATACAACAAGACAATAGGGTTTTGGTGGGTAAATATACGATTCTGA 1636
Query 1751 CTGTCGTAAACGACGATTGTTATACG-TTTTGGG 1783
|||||||||| | |||||||||||| |||||||
Sbjct 1637 -TGTCGTAAACTATGATTGTTATACGATTTTGGG 1669
Score = 1088 bits (589), Expect = 0.0
Identities = 717/772 (93%), Gaps = 35/772 (5%)
Strand=Plus/Plus
Query 7 GTACCGGTGGATCTCGAATTCCT-----C---CCC-TTTGGCTTCTCGAAGGAGAAGAAA 57
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1 GTACCGGTGGATCTCGAATTCCTCCACCCTTTCCCTTTTGGCTTCTCGAAGGAGAAGAAA 60
Query 58 AGTGTC---G-GAGAGA-A-AGAAGAAGCCAATCATCATCGCCAGTTGTTCT-TCTCTTC 110
| |||| | |||||| | |||||||| ||||||||||||||||||||||| | |||||
Sbjct 61 ACTGTCGGAGAGAGAGAGAGAGAAGAAGGCAATCATCATCGCCAGTTGTTCTGT-TCTTC 119
Query 111 GAGATATTCAAATCCTCCGTCTCTAGAGAATTTCATATCAAGAGAAT----C-AGT--G- 162
||||||||||||| ||||||||||||||||||||| ||||||||||| | ||| |
Sbjct 120 GAGATATTCAAATTCTCCGTCTCTAGAGAATTTCAGATCAAGAGAATCAGGCAAGTGGGC 179
Query 163 GTTTCTGTAGTTTGTGGTGGTGGTGGTTGGAAGGTAAGATAGGATATGGCGCAGGAGCAG 222
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 GATTCTGTAGTTTGTGGTGGTGGTGGTTGGAAGGT--GATAGGATATGGCGCAGGAGCAG 237
Query 223 GAAGGAGCGGTCGTTGAGAAAGGTGAGCCGAATGATTCC-TCCGCCGCTGCCGTGGCCGC 281
||||||||||| ||||||| | || ||||||||||||| | ||||||||| || | |
Sbjct 238 GAAGGAGCGGTGGTTGAGAGCGATGTGCCGAATGATTCCGT-CGCCGCTGCTGT-G--G- 292
Query 282 AACCGCAACCGCAACCGCCGATAGCGTGAAGAAGAAGCAAAATGGATTCTTTTCGCGTTT 341
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 293 --CCGCAACCGCAACCGCCGATAGCGTGAAGAAGAAGCAAAAGGGATTCTTCTCGCGTTT 350
Query 342 GTGGAATGGGATATTTAGGGTTAGAGGTGACGATTTCGAGAAGAGACTTCAATACATCTC 401
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 351 ATGGAATGGGATATTTAGGGTTAGAGGTGACGATTTTGAGAAGAGACTTCAATACATCTC 410
Query 402 AAGGGAAGAAGCTACTGTTTTATCAAGGATGAAGCGTAGATCGATTTCATGGAGGAAACT 461
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 411 AAGGGAAGAAGCTACTGTTTTATCAAGGATGAAGCGTAGATCGATTACATGGAGGAAACT 470
Query 462 CACCAGAAATCTCATCGTTTCCTCTGTATTATTCGAGATAATTGCTGTGGGTTATGCGAT 521
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 CACCAGAAATCTCATCGTTTCCTCCGTATTATTCGAGATAATTGCTGTGGGTTATGCGAT 530
Query 522 CCTGACAACCAGAACGGAAGATTTGGATTGGAGAATGAGGAGTTTCCGGATCTTGCCAAT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CCTGACAACCAGAACGGAAGATTTGGATTGGAGAATGAGGAGTTTCCGGATCTTGCCAAT 590
Query 582 GTTTATCTTACCTGCTGTTTCTGCTCTTGCTTATTCCTCAATCGTCAGCTTCTCAAAGAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GTTTATCTTACCTGCTGTTTCTGCTCTTGCTTATTCCTCAATCGTCAGCTTCTCAAAGAT 650
Query 642 GTTTGACCGCAGAGATCAAAAGACCTTGGAAAAGCTTCGAGCTGAAAGGTTGGCGAAAAT 701
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 651 GTTTGACCGCAGAGATCAAAAGACCTTGGAAAAGCTTCGAGCAGAAAGGTTGGCTAAAAT 710
Query 702 CAATGAACTTAAAGAAAGGACCAATTATTATACCACACAACAACTTATTCAG 753
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAATGAGCTTAAAGAAAGGACCAATTATTATACCACACAACAACTTATTCAG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71723931335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5